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HPC & HTC User Documentation
All user support documentation related to the Cirrus HPC and HTC service
Create a ssh key
Access to the INCD computing clusters is performed via SSH and requires the use of SSH keys for a...
OpenStack Services
Documentation for INCD Services available for users
Events
Supported Projects
Projects supported by the INCD infrastructure
Supported Institutions
supported institutions per number of ativities
Maturity Evaluation 2019
Documents related to the FCT infrastructures roadmap maturity evaluation of 2019 Documentos rela...
LNEC users
The information contained on this chapter is complementary information specific for LNEC users th...
LIP users
The information contained on this chapter is complementary information specific for LIP users tha...
PINFRA/22153/2016
Materials related to the FCT infrastructures roadmap project 01/SAICT/2016 nº 22153
INCD-Lisbon HPC cluster (Cirrus-A)
INCD-Minho HPC cluster (Cirrus-B)
Lustre Basics
The latest Lustre documentation is available at Lustre
Lustre best practices
Distributed filesystems such as Lustre are ideal for HPC and HTC environments. In these environme...
How to connect to the HPC and HTC clusters
public login services Access to the INCD clusters is only available to registered users. To us...
List of HPC and HTC servers
The list of server class types available to general users in the Cirrus HPC/HTC clusters. INCD-...
Regarding organizations
* What type of organizations can apply? * Can private companies apply to use the INCD infrastruc...
Security
Choose strong passwords - at least 9 characters long, a mixture of alphanumeric mixed case and s...
Configuring SSH
In order to simplify SSH access to remote hosts we recommend INCD users to adopt the following re...
Access
INCD is open to all academic and scientific researchers and institutions. In order to use our ser...
Login and network access
Access to INCD infrastructure is available only to registered users. Access to login machines may...
How to find your job output information
For each job you will received two files. One with errors and the other with the jobout (if you ...
How to find available resources
Global parameters HPC users are alowed to submit to the hpcgrid queue Jobs duration is maxed ...
How to use job dependencies
Some users need to submit jobs that take more time than the queue allows. In some cases it is po...
How to interpret the job status
There are a number of status for a job. to check a job status: qstat The main status are: ...
My jobs need to run longer than the queues permit
At INCD the default max elapsed time for the queues is 72h. The values for all queues can be ...
My jobs doesn't start
Request access to INCD
Helpdesk
To contact the INCD user support please send email to: helpdesk (at) incd.pt For other instituti...
Directories and filesystems
The INCD filesystems are based on the Lustre shared filesystem which is mounted in the compute no...
Disk Quota Policy
To prevent storage misuse and problems resulting from filesystems becoming full, INCD has impleme...
User Software Installation
Tips and examples on how to install software locally
Filling the request/registration form
Users Portal
Generic documentation regarding the INCD user portal
Openstack users manual
User manuals and tutorials for Openstack
General User Documentation
General documentation regarding the INCD infrastructure. This topic does not cover any services ...
Cloud user documentation
User documentation related to the Stratus Openstack Cloud Infrastructure
INCD Institucional Information
Public Information about INCD infrastructure and usage
Training
In this section you will find information related to training and other materials.
Manage jobs
Submitting and managing jobs in the Cirrus HPC and HTC clusters
Filesystem User Guide
Filesystems and data organization in the Cirrus HPC and HTC clusters
How to access
Guidance to access the INCD services
Compute Node Specs and Information
Compute nodes specs and hardware information for the Cirrus HPC and HTC clusters
Software
How the software is managed in the Cirrus HTC and HPC clusters
Getting Started
Short user guide to request access to the INCD infrastructure
Manual
User Support
General user support at INCD
Frequently Asked Questions
Common questions regarding INCD Users Portal usability.
Acknowledgements
How to acknowledge the use of the INCD infrastructure
Scientific Publications
Scientific publications which used INCD resources
Applying
Organized events
List of events organized by INCD
Dissemination
Participation in dissemination events
Training events
Training events and online material about INCD services and users support
Usage Metrics
Several usefull metrics reporting the Institutional usage of the infrastructure
Cloud Service
Book with links and materials with Cloud user manual, tutorials and training. Includes Virtualiz...
Thematic Services Tutorials
Training material for the Thematic Services officially supported by INCD
Containers Tutorials
List of tutorials used in training for using containers for scientific applications and services
Official Reports
INCD official reports and related documents
Lustre
Lustre basic description on INCD infrastructure
Public access
Public access to the INCD Cirrus HPC and HTC services
Using ssh keys
Basic description on how to use ssh keys
GPU user guide
Troubleshooting information
Login machines
Accessing the login servers with SSH
How to transfer files between INCD and a local machine
NOTE Please note that INCD Lustre storage is not designed for small files. Attempting to store ...