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What type of organizations can apply?

Frequently Asked Questions Regarding organizations

All non-profit R&D organizations recognized by the Portuguese government including: higher education institutions, state laboratories, collaborative laboratories (CoLABs), research infrastructures in the FCT roadmap, research laboratories and non profit or...

Can private companies apply to use the INCD infrastructure?

Frequently Asked Questions Regarding organizations

Private companies with publicly funded research projects can apply to use INCD. The usage is limited to the R&D activities of those projects. Private companies will have lower priority than academic or research organizations.

Research Infrastructures

Frequently Asked Questions Regarding organizations

Infrastructures in the FCT roadmap of research infrastructures can apply to use the INCD infrastructure.

Install Miniconda

Software User Software Installation

Small tutorial on how to install and run miniconda on the HPC clusters. 1. Login into your login machine 2. Download Miniconda into your local home $ wget https://repo.anaconda.com/miniconda/Miniconda2-latest-Linux-x86_64.sh 3. Execute Miniconda $ ch...

Software Management

Software

The INCD software is managed using a tool called modules. This tool allows the user to load the correct environment (PATH, LD_LIBRARY_PATH, etc) for each specific software package. The main commands are explained in the next sections. List of available Softwa...

Allowed directories for users software installations

Software User Software Installation

There are a few options for local users installation locations as showed on the next table, create appropriate paths bellow the base directory. Site Base Directory Comments INCD-Lisbon /home/GROUP/USERNAME INCD-Lisbon /data/GROUP/USERNAME ...

User Portal

User Support

For specific user portal issues please use the following contact: portal (at) incd.pt

The project is approved for funding but has not yet started

Frequently Asked Questions Filling the request/registration form

These requests will be treated in the same manner as an ongoing project.

Can organizations apply for institutional access?

Frequently Asked Questions Filling the request/registration form

Yes, but only for research or academic activities performed by research units or academic organizations. Institutional requests are treated in the same manner as the other requests. Please indicate in the access request form that the request is institutional...

I have more than one project do I need to make multiple registrations?

Frequently Asked Questions Filling the request/registration form

Yes, if you have independent projects with different fundings, you will have to register one request for each new project. No, if in the scope of the same project you have multiple fundings, in this case fill one single request and specify all fundings in th...

I have a new project do I need a new request?

Frequently Asked Questions Filling the request/registration form

Yes, if you have a new project you will need to add a new request, since all projects need to apply separately.

I have a new funding do I need a new request?

Frequently Asked Questions Filling the request/registration form

No, if that funding is to support an active project at INCD. New fundings can be added existing projects, allowing them to ask for more resources or time extensions. Yes, if you don’t have have an active project or if this funding corresponds to a different ...

Queues information

Manage jobs

List of Queues INCD-Lisbon cluster (cirrus.a.incd.pt) Name Jobs max elapsed time access Memory Max #cores[1] Comments gpu 72h everyone 2 GB/Core 16 queue for GPU resources hpc 72h everyone 8 GB/Core 64 default queue fct 72h reser...

How to acknowledge CNCA

Acknowledgements

INCD is required to provide evidence of the work made possible through the usage of the infrastructure services. The metric of success is the scientific publications produced through the usage of the INCD services. Please help us to continue delivering service...

Openstack user manuals

Openstack users manual

Openstack user documentation Openstack compute service (nova) Openstack web dashboard (horizon) Openstack image service (glance) Openstack identity service (keystone) Openstack all User Guides Openstack other documentation Opens...

INDICO - events management tool

Openstack users manual OpenStack Services

INDICO is a open-source tool for events management. It was developed at CERN (European Organization for Nuclear Research) and is developed in python with postgres database. For more information about INDICO see the reference links: INDICO web page Installa...

2017

Scientific Publications

Journal Paper with direct contribution Quarkonium production at the LHC: A data-driven analysis of remarkably simple experimental patterns P. Faccioli, C. Lourenço, M. Araújo, V. Knünz, I. Krätschmer, J. Seixas Phys.Lett. B773 (2017) 476-486 10.1016/j.physle...

2018

Scientific Publications

Journal Paper with direct contribution Llarena, Anna;Katrin, et al. "INNUENDO: a cross sectoral platform for the integration of genomics in the surveillance of food borne pathogens." EFSA Supporting Publications 15.11 (2018): 1498E. https://efsa.onlinelibrar...

2019

Scientific Publications

Journal Paper with direct contribution A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, OPENCoastS: An open-access service for the automatic generation of coastal for...

2018

Organized events

Digital Infrastructures for Research (DI4R), ISCTE, Lisboa, Outubro de 2018 Offcial Programme IBERGRID 2018 – Iberian Grid Infrastructure Conference, Lisboa, Outubro de 2018 Offcial Programme