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All non-profit R&D organizations recognized by the Portuguese government including: higher education institutions, state laboratories, collaborative laboratories (CoLABs), research infrastructures in the FCT roadmap, research laboratories and non profit or...

Private companies with publicly funded research projects can apply to use INCD. The usage is limited to the R&D activities of those projects. Private companies will have lower priority than academic or research organizations.

Infrastructures in the FCT roadmap of research infrastructures can apply to use the INCD infrastructure.

Small tutorial on how to install and run miniconda on the HPC clusters. 1. Login into your login machine 2. Download Miniconda into your local home $ wget https://repo.anaconda.com/miniconda/Miniconda2-latest-Linux-x86_64.sh 3. Execute Miniconda $ ch...

The INCD software is managed using a tool called modules. This tool allows the user to load the correct environment (PATH, LD_LIBRARY_PATH, etc) for each specific software package. The main commands are explained in the next sections. List of available Softwa...

There are a few options for local users installation locations as showed on the next table, create appropriate paths bellow the base directory. Site Base Directory Comments INCD-Lisbon /home/GROUP/USERNAME INCD-Lisbon /data/GROUP/USERNAME ...

For specific user portal issues please use the following contact: portal (at) incd.pt

These requests will be treated in the same manner as an ongoing project.

Yes, but only for research or academic activities performed by research units or academic organizations. Institutional requests are treated in the same manner as the other requests. Please indicate in the access request form that the request is institutional...

Yes, if you have independent projects with different fundings, you will have to register one request for each new project. No, if in the scope of the same project you have multiple fundings, in this case fill one single request and specify all fundings in th...

Yes, if you have a new project you will need to add a new request, since all projects need to apply separately.

No, if that funding is to support an active project at INCD. New fundings can be added existing projects, allowing them to ask for more resources or time extensions. Yes, if you don’t have have an active project or if this funding corresponds to a different ...

List of Queues INCD-Lisbon cluster (cirrus.a.incd.pt) Name Jobs max elapsed time access Memory Max #cores[1] Comments gpu 72h everyone 2 GB/Core 16 queue for GPU resources hpc 72h everyone 8 GB/Core 64 default queue fct 72h reser...

INCD is required to provide evidence of the work made possible through the usage of the infrastructure services. The metric of success is the scientific publications produced through the usage of the INCD services. Please help us to continue delivering service...

Openstack user documentation Openstack compute service (nova) Openstack web dashboard (horizon) Openstack image service (glance) Openstack identity service (keystone) Openstack all User Guides Openstack other documentation Opens...

INDICO is a open-source tool for events management. It was developed at CERN (European Organization for Nuclear Research) and is developed in python with postgres database. For more information about INDICO see the reference links: INDICO web page Installa...

Journal Paper with direct contribution Quarkonium production at the LHC: A data-driven analysis of remarkably simple experimental patterns P. Faccioli, C. Lourenço, M. Araújo, V. Knünz, I. Krätschmer, J. Seixas Phys.Lett. B773 (2017) 476-486 10.1016/j.physle...

Journal Paper with direct contribution Llarena, Anna;Katrin, et al. "INNUENDO: a cross sectoral platform for the integration of genomics in the surveillance of food borne pathogens." EFSA Supporting Publications 15.11 (2018): 1498E. https://efsa.onlinelibrar...

Journal Paper with direct contribution A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, OPENCoastS: An open-access service for the automatic generation of coastal for...

Digital Infrastructures for Research (DI4R), ISCTE, Lisboa, Outubro de 2018 Offcial Programme IBERGRID 2018 – Iberian Grid Infrastructure Conference, Lisboa, Outubro de 2018 Offcial Programme