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203 total results found

Tools

Software Lifecycle

"EOSC-Synergy Jenkins Pipeline Library demonstration @ EGI conference 2020" <BR> Video: demo "EOSC-Synergy Service QA and DataVerse" <BR> Video: presentation "A quality based approach to software and services" <BR> Presentation: slides

OPENCoastS

Thematic Services Tutorials

Tutorials related to the OPENCoastS thematic service "2nd OPENCoastS e-Tutorial: build your forecast for all circulation choices" Videos: day1, day2, day3 "OPENCoastS hands-on course: An open-access service for on-demand coastal predictions" Prese...

GBIF

Thematic Services Tutorials

Tutorials related to the GBIF thematic service "Global Biodiversity Information Facility (GBIF) tutorials" Tutorials: list

WorSiCa

Thematic Services Tutorials

Tutorials related to the WorSiCa thematic service "Integration of WORSICA's thematic service in EOSC - challenges and achievements" <BR> Presentation: slides

Introduction

Infrastructures

Introductory materials to digital infrastructures and e-infrastrctures. "e-infrastructures and how can we use them" <BR> Materials: video, slides "The power of digital e-infrastructures: EOSC-hub" <BR> Materials: slides

UDocker Containers

Manage jobs

Availability of udocker containers directly on CVMFS read-only filesystem in order to speedup their use and improve reproducibility, reliability and avoid interferences between calls, we will try to optimize compilations when ever possible. This containers ca...

Jobs information

Manage jobs Manage slurm jobs

List all current jobs for a user: squeue -u &lt;username&gt; List all running jobs for a user: squeue -u &lt;username&gt; -t RUNNING List all pending jobs for a user: squeue -u &lt;username&gt; -t PENDING List all current jobs in the shared partition for...

Job pipeline using slurm dependencies

Manage jobs Manage slurm jobs

Some times we need to launch a list of jobs that execute in sequence, one after another. In those cases we will use the --depency sbatch option, check the manual page for more details, we will only present a simple example. Simple example Suppose we need to...

AlphaFold

Software

Introduction Environment Data Base Location run_udocker.py How to Run Example on Partition "gpu" Example on Partition "fct" Example on Partition "hpc" sbatch Options Benchmarks References 1. Introduction The CNCA team prepared a lo...

Json Schemas

EGI Repositories Requirements

Product { "name" : "htcondor", "version" : "9.0.1", "currentState" : "Production", "technologyProvider" : "CHTC (UW-Madison)", "contact" : "jfrey.at.cs.wisc.edu", "technicalContact" : "jfrey.at.cs.wisc.edu", "description" : " HTCondor is a specialized...

GPG Sign RPMs

EGI Repositories Requirements

GPG key generation A gpg key was generated with the following parameters: gpg --full-generate-key Please select what kind of key you want: (1) RSA and RSA (default) Your selection? 1 RSA keys may be between 1024 and 4096 bits long. What keysize do you want...

Deployment of new releases

EGI Repositories Documentation

Process to deploy a new release manually: 1.Create the json files using one of the following options: 1.1. yaml templates - this option needs to use yaml2json converter to generate json file 1.2. json templates - use the json SW/templates/distribution.t...

2021

Training events Events

Running containers in your user space with udocker [materials]. Location: online integrated in the EGI seminars, 23 June 2021 Software Development in modern days: DevOps methodology Location: online integrated in the ISEL seminars, 30 June 2021

2021

Dissemination

Encontro RNCA 2021, virtual 29 September 2021: Infraestrutura Nacional de Computação Distribuída TICAL Conference 2021, Virtual: Bella Demo: High Energy Physics 12th Advanced Doctoral onference On Computing, Electrical And Industrial Systems, Caparica, Port...

2020

Dissemination

Encontro Ciência 2020, Centro de Congressos de Lisboa, 4 November 2020: Infraestrutura Nacional de Computação Distribuída FCCN eJornadas 2020, 14 October 2020: INCD - Infraestrutura Nacional de Computação Distribuída

2022

Scientific Publications

International articles with referee Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 1...

Active SLA

Service Level Agreements

SLA With Instituo Superior de Agronomia (ISA) related with the GBIF.PT activities. The Full document can be found here Supported service: https://www.gbif.pt/

Add new product to an existing distribution

EGI Repositories Documentation

Ways to add a new product to an existing distribution (Work in progress) dir structure: /var/www/be/ data/ (The latest json data for the FE) ├── config.js ├── distributions/ │ ├── CMD-ONE │ │ ├── 0.0.0.json │ │ └── ... │ ├── CMD-...

Add new distribution

EGI Repositories Documentation

Ways to add a new distribution (Work in progress) cd /var/www/be Create distribution folder: mkdir data/distributions/%distribution-name% Use/Copy the template: cp SW/templates/distribution.yaml ./ Convert the yaml to json: (need to have n...

2022

Organized events

IBERGRID 2022 – Iberian Grid Infrastructure Conference, Faro, October 11-13, 2022 Official Programme First EOSC Iberian Tripartite Workshop, Faro, October 10, 2022 Official Programme EOSC-Synergy All Hands Meeting, Faro, October 12-13, 2022 O...