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2022

International articles with referee

  1. Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 10.3389/fnins.2022.862315
  2. Magalhães, Rita P., et al. "Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach." Molecular Systems Design & Engineering 7.5 (2022): 434-446. https://doi.org/10.1039/D2ME00009A
  3. Burke, Anthony J., Carla SS Teixeira, and Sergio F. Sousa. "Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product." Asian Journal of Organic Chemistry 11.4 (2022): e202100692. https://doi.org/10.1002/ajoc.202100692
  4. Lapaillerie, Delphine, et al. "Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces." Antimicrobial Agents and Chemotherapy 66.8 (2022): e00083-22. https://doi.org/10.1128/aac.00083-22
  5. Araškov, Jovana B., et al. "Zn (II) complexes with thiazolyl–hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity." CrystEngComm 24.29 (2022): 5194-5214. https://doi.org/10.1039/D2CE00443G
  6. Keller-Costa, Tina, et al. "Evidence for cross-feeding, metabolic specialization, and niche partitioning in the octocoral holobiont." (2022). https://doi.org/10.21203/rs.3.rs-1630933/v1
  7. Nogueira, Paulo Jorge, et al. "Multimorbidity profile of COVID-19 deaths in Portugal during 2020." Journal of clinical medicine 11.7 (2022): 1898. https://doi.org/10.3390/jcm11071898
  8. Silva, Sandra Godinho, et al. "Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere." Marine Drugs 20.7 (2022): 423. https://doi.org/10.3390/md20070423
  9. Fernandes, Henrique S., et al. "A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems." Molecules 27.17 (2022): 5524. https://doi.org/10.3390/molecules27175524
  10. Vieira, Tatiana F., et al. "Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations." Antibiotics 11.2 (2022): 185. https://doi.org/10.3390/antibiotics11020185
  11. Rocha, Juliana F., Sérgio F. Sousa, and Nuno MF Sousa A. Cerqueira. "Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids." ACS Catalysis 12.9 (2022): 4990-4999. https://doi.org/10.1021/acscatal.1c05567
  12. Pereira, Ana Cláudia, et al. "Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells." Molecular Systems Design & Engineering (2022). https://doi.org/10.1039/D2ME00022A
  13. Rodrigues, João Antunes, et al. "Automatic Risk Assessment for an Industrial Asset Using Unsupervised and Supervised Learning." Energies 15.24 (2022): 9387. https://doi.org/10.3390/en15249387
  14. Silva, Sara, et al. "Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface." Molecules 27.9 (2022): 2734. https://doi.org/10.3390/molecules27092734
  15. Pires, Rita Costa, et al. "Transcriptome Analysis in Cork Oak Using Laser Microdissection and RNA-Seq." Biology and Life Sciences Forum. Vol. 11. No. 1. MDPI, 2021. https://doi.org/10.3390/IECPS2021-11914
  16. Vilela, Joana, et al. "Biomedical knowledge graph embeddings for personalized medicine: Predicting disease‐gene associations." Expert Systems (2022): e13181. https://doi.org/10.1111/exsy.13181
  17. Caled, D., Carvalho, P., Silva, M.J. (2022). MINT - Mainstream and Independent News Text Corpus. In: , et al. Computational Processing of the Portuguese Language. PROPOR 2022. Lecture Notes in Computer Science(), vol 13208. Springer, Cham. https://doi.org/10.1007/978-3-030-98305-5_3
  18. Silva, Margarida, et al. "A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast." Molecular Ecology (2022). https://doi.org/10.1111/mec.16428
  19. Vieira, Tatiana F., et al. "Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach." Molecular Systems Design & Engineering 7.10 (2022): 1294-1306. https://doi.org/10.1039/D2ME00088A
  20. Catumba, Guilherme TR, Orlando Oliveira, and Paulo J. Silva. "Another look at the Landau gauge three-gluon vertex." EPJ Web of Conferences. Vol. 258. EDP Sciences, 2022. https://doi.org/10.1051/epjconf/202225802008
  21. Comparison of Different Features and Neural Networks for Predicting Industrial Paper Press Condition; João Antunes Rodrigues, José Torres Farinha, Mateus Mendes, Ricardo J. G. Mateus, António J. Marques Cardoso. https://doi.org/10.3390/en15176308
  22. Antunes Rodrigues J, Torres Farinha J, Mendes M, Mateus R, Marques Cardoso A. Short and long forecast to implement predictive maintenance in a pulp industry. Eksploatacja i Niezawodnosc – Maintenance and Reliability 2022; 24 (1): 33–41 http://dx.doi.org/10.17531/ein.2022.1.5
  23. Isidro, J., Borges, V., Pinto, M. et al. Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nat Med 28, 1569–1572 (2022). https://doi.org/10.1038/s41591-022-01907-y
  24. Adriana M. Saur, Jorge Sinval, Cristina M. Del-Ben, Rosângela F. L. Batista8, Antônio A. M. Da Silva, Marco A. Barbieri1, Heloisa Bettiol1 The Postpartum Bonding Questionnaire: validity evidence from the Brazilian version; Journal of Child and Family Studies (https://doi.org/10.1007/s10826-022-02406-x)
  25. João A.Marques da SilvaaMiguelVieira de CarvalhoabRui P.Cardoso CoelhoabIgor A.Rodrigues LopesabFrancisco M.Andrade Piresab On the representativeness of polycrystalline models with transformation induced plasticity; Finite Elements in Analysis and Design (https://doi.org/10.1016/j.finel.2022.103875)
  26. Aggregation of a Parkinson’s Disease-Related Peptide: When Does Urea Weaken Hydrophobic Interactions? N. Galamba* Cite this: ACS Chem. Neurosci. 2022, 13, 12, 1769–1781 Publication Date:May 26, 2022 (https://doi.org/10.1021/acschemneuro.2c00169)
  27. Gadelho, J., Guedes Soares, C., Barajas, G., & Lara, J. L. (2022). CFD analysis of the PTO damping on the performance of an onshore dual chamber OWC. In C. Guedes Soares & T. A. Santos, Trends in Maritime Technology and Engineering Volume 2 (1st ed., pp. 381–389). CRC Press. https://doi.org/10.1201/9781003320289-40
  28. Gadelho, J., & Guedes Soares, C., (2022). Pneumatic performance improvement of an onshore dual chamber OWC using a CFD model. In Trends in Renewable Energies Offshore (Guedes Soares C., (Ed.)). https://doi.org/10.1201/9781003360773-36
  29. Non-B DNA conformations analysis through molecular dynamics simulations - ScienceDirect André F. Pina, Sérgio F. Sousa, Luísa Azevedo, João Carneiro, Non-B DNA conformations analysis through molecular dynamics simulations, Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 1866, Issue 12, 2022, 130252, ISSN 0304-4165, https://doi.org/10.1016/j.bbagen.2022.130252.
  30. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations (mdpi.com) Boudjouan F, Zeghbib W, Carneiro J, Silva R, Morais J, Vasconcelos V, Lopes G. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations. Agriculture. 2022; 12(11):1755. https://doi.org/10.3390/agriculture12111755
  31. Bendall EE, Bagley R, Linnen CR, Sousa VC (2022) Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31, 2348–2366. https://doi.org/10.1111/mec.16410
  32. João Carvalho, Hernan Morales, Rui Faria, Roger Butlin, Vitor Sousa (2022) Integrating Pool-seq uncertainties into demographic inference. Authorea. December 05, 2022. DOI: 10.22541/au.167023671.11036754/v1
  33. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Insights into the Degradation of Polymer-Drug Conjugates by an Overexpressed Enzyme in Cancer Cells, J. Med. Chem. 2023, doi.org/10.1021/acs.jmedchem.2c01781.
  34. Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek Quinn, Thomas S. Moody, Andreia F. Sousa, Armando J.D. Silvestre, and Alexandra T.P. Carvalho. Org. Process Res. Dev. 2022. doi.org/10.1021/acs.oprd.1c00480.
  35. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022) A drug discovery approach based on comparative transcriptomics between two toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. Mol Omics, 18(8), 731-744. doi: 10.1039/D2MO00138A
  36. RODRIGO, A.P., LOPES, A., PEREIRA, R., ANJO, S.I., MANADAS, B., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2022) Endogenous Fluorescent Proteins in the Mucus of an Intertidal Polychaeta: Clues for Biotechnology. Mar Drugs, 20(4), 224. doi: 10.3390/md20040224
  37. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Echium plantagineum L. (Boraginaceae), the first chloroplast genome belonging to the Echium genus. Mitochondrial DNA Part B, 7(6), 1154–1156. https://doi.org/10.1080/23802359.2022.2087559
  38. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Nonea vesicaria (L.) Rchb. (Boraginaceae), the first chloroplast genome belonging to the Nonea genus. Mitochondrial DNA Part B, 7(7), 1302–1304. https://doi.org/10.1080/23802359.2022.2095233
  39. Leonardo, I. C., Barreto Crespo, M. T., & Gaspar, F. B. (2022). Unveiling the complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a taint-producing strain. G3 Genes|Genomes|Genetics, jkac225. https://doi.org/10.1093/g3journal/jkac225
  40. Non-B DNA conformations analysis through molecular dynamics simulations Pina A.F., Sousa S.F., Azevedo L., and Carneiro J.Biochimica et Biophysica Acta - General Subjects 1866 (12) (2022) Article | DOI: 10.1016/j.bbagen.2022.130252
  41. Liposomal Formulations Loaded with a Eugenol Derivative for Application as Insecticides: Encapsulation Studies and In Silico Identification of Protein Targets Fernandes M.J.G., Pereira R.B., Rodrigues A.R.O., Vieira T.F., Fortes A.G., Pereira D.M., Sousa S.F., Goncalves M.S.T., and Castanheira E.M.S. Nanomaterials 12 (20) (2022) Article | DOI: 10.3390/nano12203583
  42. A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems Fernandes H.S., Cerqueira N.M.F.S.A., Sousa S.F., and Melo A.Molecules 27 (17) (2022) Article | DOI: 10.3390/molecules27175524
  43. Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Lapaillerie D., Charlier C., Guyonnet-Duperat V., Murigneux E., Fernandes H.S., Martins F.G., Magalhaes R.P., Vieira T.F., Richetta C., Subra F., Lebourgeois S., Charpentier C., Descamps D., Visseaux B., Weigel P., Favereaux A., Beauvineau C., Buron F., Teulade-Fichou M.-P., Routier S., Gallois-Montbrun S., Meertens L., Delelis O., Sousa S.F.,and Parissi V. Antimicrobial Agents and Chemotherapy 66 (8) (2022) Article | DOI: 10.1128/aac.00083-22
  44. Synthesis, computational and nanoencapsulation studies on eugenol-derived insecticides Coelho C.M.M., Pereira R.B., Vieira T.F., Teixeira C.M., Fernandes M.J.G., Rodrigues A.R.O., Pereira D.M., Sousa S.F.,Gil Fortes A., Castanheira E.M.S., and T. Goncalves M.S. New Journal of Chemistry 46 (30) pp.14375-14387 (2022) Article | DOI: 10.1039/d2nj01893d
  45. Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach Vieira T.F., Magalhaes R.P., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering (2022) Article | DOI: 10.1039/d2me00088a
  46. Study of the anticancer potential of Cd complexes of selenazoyl-hydrazones and their sulfur isosters Markovic S.B., Maciejewska N., Olszewski M., Visnjevac A., Puerta A., Padron J.M., Novakovic I., Kojic S., Fernandes H.S., Sousa S.F., Ramotowska S., Chylewska A., Makowski M., Todorovic T.R., and Filipovic N.R. European Journal of Medicinal Chemistry 238 (2022) Article | DOI: 10.1016/j.ejmech.2022.114449
  47. New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes H.S., Sousa S.F., and Cerqueira N.M.F.S.A. Molecular Diversity 26 (3) pp.1373-1381 (2022) Article | DOI: 10.1007/s11030-021-10259-7
  48. Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids Rocha J.F., Sousa S.F., and Cerqueira N.M.F.S.A. ACS Catalysis 12 (9) pp.4990-4999 (2022) Article | DOI: 10.1021/acscatal.1c05567
  49. The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina A.F., Sousa S.F., and Cerqueira N.M.F.S.A. ChemBioChem 23 (9) (2022) (IF 3.461, Q1)Article | DOI: 10.1002/cbic.202100555
  50. Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface Silva S., Marto J., Goncalves L.M., Fernandes H.S., Sousa S.F., Almeida A.J., and Vale N. Molecules 27 (9) (2022) Article | DOI: 10.3390/molecules27092734
  51. The critical role of Asp206 stabilizing residues on the catalytic mechanism of the Ideonella sakaiensis PETase Magalhaes R.P., Fernandes H.S., and Sousa S.F. Catalysis Science and Technology 12 (11) pp.3474-3483 (2022) Article | DOI: 10.1039/d1cy02271g
  52. Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product Burke A.J., Teixeira C.S.S., and Sousa S.F.Asian Journal of Organic Chemistry 11 (4) (2022) Article | DOI: 10.1002/ajoc.202100692
  53. Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells Pereira A.C., Pina A.F., Sousa D., Ferreira D., Santos-Pereira C., Rodrigues J.L., Melo L.D.R., Sales G., Sousa S.F., and Rodrigues L.R. Molecular Systems Design and Engineering 7 (6) pp.637-650 (2022) Article | DOI: 10.1039/d2me00022a
  54. Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach Magalhaes R.P., Vieira T.F., Melo A., and Sousa S.F. Molecular Systems Design and Engineering 7 (5) pp.434-446 (2022) Article | DOI: 10.1039/d2me00009a
  55. Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations Vieira T.F., Magalhaes R.P., Simoes M., and Sousa S.F. Antibiotics 11 (2) (2022) (IF 5.22) Article | DOI: 10.3390/antibiotics11020185
  56. Zn(II) complexes with thiazolyl-hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity Araskov J.B., Visnjevac A., Popovic J., Blagojevic V., Fernandes H.S., Sousa S.F., Novakovic I., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-De-Luzuriaga J.M., Filipovic N.R., and Todorovic T.R. CrystEngComm (2022) Article | DOI: 10.1039/d2ce00443g
  57. Biguino, B., Olmedo, E., Ferreira, A., Zacarias, N., Lamas, L., Favareto, L., Palma, C., Borges, C., Teles-Machado, A., Dias, J., Castellanos, P. & Brito, A.C. 2022. Evaluation of SMOS L4 Sea Surface Salinity product in the Western Iberian Coast. Remote Sensing, 14. 423. https://www.mdpi.com/2072-4292/14/2/423
  58. Cereja, R., Brotas, V., Nunes, S., Rodrigues, M., Cruz, J.P. & Brito, A.C. 2022. Tidal influence on water quality indicators in a temperate mesotidal estuary (Tagus estuary, Portugal). Ecological Indicators, 136. 108715. https://www.sciencedirect.com/science/article/pii/S1470160X22001868
  59. Santos, C., Cabral, S., Carvalho, F., Sousa, P., Goulding, T., Ramajal, J.  Silva, G.,  Brito, A.C., Costa, J.L. & Chainho, P. 2022. Spatial and temporal variations of cockle (Cerastoderma spp.) populations in two Portuguese estuarine systems with low directed fishing pressure. Frontiers in Marine Science 9. 699622. https://www.frontiersin.org/articles/10.3389/fmars.2022.699622/full
  60. Silva, A.F., Costa, B.H..; Costa, J.L., Pereira, E., Marques, J.P., Castro, J.J., Lino, P.G., Candeias-Mendes, A., Pousão-Ferreira, P., Sousa, I., Bentes L., Gonçalves, J.M.S., Almeida, P.R. & Quintella, B.R. 2022. Movements of Hatchery-Reared Dusky Groupers Released in a Northeast Atlantic Coastal Marine Protected Area. Journal of Marine Sciences and Engineering, 94. 10. https://www.mdpi.com/2077-1312/10/7/904
  61. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  62. A parametric approach for the identification of single-charged isotopes with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1031 (2022) 166564 10.1016/j.nima.2022.166564
  63. Iterative-Bayesian unfolding of cosmic-ray isotope fluxes measured by AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1046 (2023) 167695 10.1016/j.nima.2022.167695
  64. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  65. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  66. Measurement of Higgs boson decay into b-quarks in associated production with a top-quark pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2917 authors) J. High Energy Phys. 6 (2022) 097 10.1007/JHEP06(2022)097
  67. The Muon Puzzle in cosmic-ray induced air showers and its connection to the Large Hadron Collider Johannes Albrecht, Lorenzo Cazon, Hans Dembinski, Anatoli Fedynitch, Karl-Heinz Kampert, Tanguy Pierog, Wolfgang Rhode, Dennis Soldin, Bernhard Spaan, Ralf Ulrich, Michael Unger Astrophys. Space Sci. 367 (2022) 27 10.1007/s10509-022-04054-5
  68. Arrival Directions of Cosmic Rays above 32 EeV from Phase One of the Pierre Auger Observatory Pierre Auger Collaboration (373 authors) Astrophys. J. 935 (2022) 170 10.3847/1538-4357/ac7d4e
  69. A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory The Pierre Auger Collaboration Astrophysical Journal Supplement 264 (2023) 2, 50
  70. Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at 13 TeV CMS Collaboration arXiv.2206.09401 https://doi.org/10.48550/arXiv.2206.09401
  71. Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. Rev.Phys. 8 (2022) 100071
  72. Observation of Bs0 mesons and measurement of the Bs0/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration (2328 authors) Phys. Lett. B 829 (2022) 137062 10.1016/j.physletb.2022.137062
  73. A portrait of the Higgs boson by the CMS experiment ten years after the discovery CMS collaboration Nature 607 (2022) 7917, 60-68 10.1038/s41586-022-04892-x
  74. Search for high-mass exclusive gammagamma-> WW and gammagamma-> ZZ production in proton-proton collisions at sqrt(s) = 13 TeV CMS and TOTEM Collaborations arXiv:2211.16320
  75. Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations arXiv:2210.0585
  76. A machine learning-based methodology for pulse classification in dual-phase xenon time projection chambers P. Bras, F. Neves, A. Lindote, A. Cottle, R. Cabrita, E. Lopez Asamar, G. Pereira, C. Silva, V. Solovov, M.I. Lopes Eur. Phys. J. C 82 (2022) 553 10.1140/epjc/s10052-022-10502-x
  77. Radiation as a Tool against Neurodegeneration-A Potential Treatment for Amyloidosis in the Central Nervous System Coelho CM, Pereira L, Teubig P, Santos P, Mendes F, Viñals S, Galaviz D, Herrera F 10.3390/ijms232012265
  78. Determination of Ionizing Threshold of Trimethylamine Ions with a High Resolution RGA Mass Spectrometer A.M.F. Trindade, J. Escada, M. Rajado Silva, F.I.G.M. Borges, F.P. Santos 10.1088/1748-0221/17/02/P02031
  79. Dual-Polarity Ion Drift Chamber: A new system to measure the mobility of positive and negative ions D.J.G. Marques, A.F.V. Cortez, M.A.G. Santos, F.P. Santos, A.P. Marques, J. Escada, C.A.N. Conde, F.I.G.M. Borges NIMA 1029 (2022) 166416 10.1016/j.nima.2022.166416
  80. Dual-Polarity Ion Drift Chamber: Experimental results with Xe–S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 https://doi.org/10.1016/j.nima.2022.167575
  81. A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 https://doi.org/10.1016/j.nima.2022.167603
  82. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  83. All-sky Medium Energy Gamma-ray Observatory eXplorer mission concept Regina Caputo, Marco Ajello, Carolyn A. Kierans, Jeremy S. Perkins, Judith L. Racusin, Luca Baldini, Matthew G. Baring, Elisabetta Bissaldi, Eric Burns, Nicholas Cannady, Eric Charles, Rui M. Curado da Silva, Ke Fang, Henrike Fleischhack, Chris Fryer, Yasushi Fukazawa, J. Eric Grove, Dieter Hartmann, Eric J. Howell, Manoj Jadhav, Christopher M. Karwin, Daniel Kocevski, Naoko Kurahashi, Luca Latronico, Tiffany R. Lewis, Richard Leys, Amy Lien, Lea Marcotulli, Israel Martinez-Castellanos, Mario Nicola Mazziotta, Julie McEnery, Jessica Metcalfe, Kohta Murase, Michela Negro, Lucas Parker, Bernard Phlips, Chanda Prescod-Weinstein, Soebur Razzaque, Peter S. Shawhan, Yong Sheng, Tom A. Shutt, Daniel Shy, Clio Sleator, Amanda L. Steinhebel, Nicolas Striebig, Yusuke Suda, Donggeun Tak, Hiro Tajima, Janeth Valverde, Tonia M. Venters, Zorawar Wadiasingh, Richard S. Woolf, Eric A. Wulf, Haocheng Zhang, Andreas Zoglauer Journal of Astronomical Telescopes, Instruments, and Systems, Vol. 8, Issue 4, 044003 (October 2022). https://doi.org/10.1117/1.JATIS.8.4.044003
  84. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  85. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  86. Techniques for TPC Calibration: application to liquid Ar-TPCs J. Maneira for the DUNE Collaboration Particles 2022, 5(1), 74-83
  87. Improved search for invisible modes of nucleon decay in water with the SNO+ detector SNO+ Collaboration Phys. Rev. D 105, 112012 (2022) 10.1103/PhysRevD.105.112012
  88. Going to the light front with contour deformations Gernot Eichmann, Eduardo Ferreira, Alfred Stadler (selected for Editor’s Choice) Phys.Rev.D 105 (2022) 3, 034009 https://doi.org/10.1103/PhysRevD.105.034009
  89. Theory introduction to baryon spectroscopy, Gernot Eichmann Few-Body Systems volume 63, Article number: 57 (2022) https://doi.org/10.1007/s00601-022-01756-y
  90. Isotopic cross sections of fragmentation residues produced by light projectiles on carbon near 400A MeV J. M. Boillos, D. Cortina-Gil, J. Benlliure, et al. (R3B collaboration) Phys. Rev. C 105, 014611 (2022) 10.1103/PhysRevC.105.014611
  91. Structure Calculations in Nd III and U III Relevant for Kilonovae Modelling Ricardo F. Silva, Jorge M. Sampaio, Pedro Amaro, Andreas Flörs, Gabriel Martínez-Pinedo, and José P. Marques Atoms2022,10,18 10.3390/atoms10010018
  92. Structure of single KL0–, double KL1–, and triple KL2−ionization in Mg, Al, and Si targets induced by photons, and their absorption spectra Y. Ménesguen, M.-C. Lépy, Y. Ito, M. Yamashita, S. Fukushima, T. Tochio, M. Polasik, K. Slabkowska,L. Syrockif, P. Indelicatog, J. P. Gomilsekh, J. P. Marques, J.M.Sampaio, J. Machado, P. Amaro, M. Guerra, J. P. Santos, and F. Parente Rad. Phys. Chem. 194, 110048 (2022) 10.1016/j.radphyschem.2022.110048
  93. Unveiling the two-proton halo character of 17Ne: Exclusive measurement of quasi-free proton-knockout reactions C. Lehr, F. Wamers, F.Aksouh, et al. Phys. Lett. B 827, 136957 (2022) 10.1016/j.physletb.2022.136957
  94. Experimental and theoretical approaches for determining the K-shell fluorescence yield of carbon Philipp Hönicke, Rainer Unterumsberger, Nils Wauschkuhn, Burkhard Beckhoff, Markus Krämer, Paul Indelicato, Jorge Sampaio, José Pires Marques, Mauro Guerra, Fernando Parente, and José Paulo Santos Rad. Phys. Chem. 202, 110501 (2023) 10.1016/j.radphyschem.2022.110501
  95. L-shell fluorescence yield for heavy elements with 80≤Z≤96 K. Meddouh, S. Daoudi, A. Kahoul, J.M. Sampaio, J.P. Marques, F. Parente, N. Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani Rad. Phys. Chem. 202, 110481 (2023) 10.1016/j.radphyschem.2022.110481
  96. K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence Daniel Pinheiro, André Fernandes, César Godinho, Jorge Machado, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, Mauro Guerra Rad. Phys. Chem. 203, 110594 (2023) 10.1016/j.radphyschem.2022.110594
  97. Semi-empirical and empirical calculation of Kβ/Kα intensity ratios for Low-Z Elements A. Hamidani, A. Kahoul, S. Daoudi, J.M. Sampaio, J.P. Marques, F. Parente, K. Meddouh, N. Kup Aylikci, V. Aylikci, Y. Kasri At. Nucl. Data Tables 149, 101549 (2023) 10.1016/j.adt.2022.101549
  98. Independently Optimized Orbital Sets in GRASP – The Case of Hyperfine Structure in Li I Y. Li, P. Jönsson, M. Godefroid, G. Gaigalas, J. Bieron, J. P. Marques, P. Indelicato, and C. Chen Atoms 2023, 11, 4 10.3390/atoms11010004
  99. Design of beam optics for RF-separated kaon and antiproton beams in the M2 beam line of the CERN North Area A. Gerbershagen et al. (14 authors) NIM A 1048 (2023) 168004 https://doi.org/10.1016/j.nima.2022.168004
  100. An experiment for electron-hadron scattering at the LHC K.D. J. André et al Eur.Phys.J.C 82 (2022) 1, 40 10.1140/epjc/s10052-021-09967-z
  101. A template method to measure the t(t)over-bar polarisation J. A. Aguilar-Saavedra, M. C. N. Fiolhais, P. Martin-Ramiro, J. M. Moreno, A. Onofre Eur. Phys. J. C 82 (2022) 134 10.1140/epjc/s10052-022-10063-z
  102. Impact of jet-production data on the next-to-next-to-leading-order determination of HERAPDF2.0 parton distributions H1 Collaboration / ZEUS Collaboration (234 authors) Eur. Phys. J. C 82 (2022) 243 10.1140/epjc/s10052-022-10083-9
  103. Jets and Jet Substructure at Future Colliders Johan Bonilla et al. (27 authors) Front. Physics 10 (2022) 897719 10.3389/fphy.2022.897719
  104. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  105. On the polarization of the non-prompt contribution to inclusive J/psi production in pp collisions Pietro Faccioli, Carlos Lourenco J. High Energy Phys. 10 (2022) 010 10.1007/JHEP10(2022)010
  106. NNLO interpolation grids for jet production at the LHC D. Britzger, A. Gehrmann-De Ridder, T. Gehrmann, E. W. N. Glover, C. Gwenlan, A. Huss, J. Pires, K. Rabbertz, D. Savoiu, M. R. Sutton, J. Stark Eur.Phys.J.C 82 (2022) 10, 930 10.1140/epjc/s10052-022-10880-2
  107. Improved background subtraction and a fresh look at jet sub-structure in JEWEL J. G. Milhano and K. Zapp Eur. Phys. J. C82 (2022) no.11, 1010 10.1140/epjc/s10052-022-10954-1
  108. Multiparticle production in proton-nucleus collisions beyond eikonal accuracy P. Agostini, T. Altinoluk, N. Armesto, F. Dominguez and J. G. Milhano Eur. Phys. J. C82 (2022) no.11, 1001 10.1140/epjc/s10052-022-10962-1
  109. Flavour-Changing Neutral Scalar Interactions of the Top Quark Nuno Castro, Kirill Skovpen Universe 2022, 8, 609 10.3390/universe8110609
  110. Heavy quarks and jets as probes of the QGP Liliana Apolinário, Michael Winn, Yen-Jie Lee Prog.Part.Nucl.Phys. 127 (2022) 103990 10.1016/j.ppnp.2022.103990
  111. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  112. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  113. SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Colaboration To be published in JINST (arXiv:2210.02784)
  114. The SHiP experiment at the proposed CERN SPS Beam Dump Facility SHiP Collaboration Eur.Phys.J.C 82 (2022) 5, 486 https://doi.org/10.1140/epjc/s10052-022-10346-5
  115. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  116. Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa arXiv:2211.03233 10.48550/arXiv.2211.03233
  117. A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 DOI: 10.1126/sciadv.abm4234
  118. Validation of dMEREM, the Detailed Mars Energetic Radiation Environment Model, with RAD Data from the Surface of Mars Patricia Goncalves, Luisa Arruda, Marco Pinto Front. Astron. Space Sci. 9 (2022) 833144 10.3389/fspas.2022.833144
  119. Pioneering evaluation of GaN transistors in geostationary satellites Hugo Mostardinha, Diogo Matos, Nuno Borges Carvalho, Jorge Sampaio, Marco Pinto, Patricia Gonçalves, Tiago Sousa, Paul Kurpas, Joachim Wuerfl, Andrew Barnes, François Garat & Christian Poivey Sci Rep 12, 12886 (2022) https://doi.org/10.1038/s41598-022-17179-y
  120. The BepiColombo Environment Radiation Monitor, BERM Marco Pinto, Beatriz Sanchez-Cano, Richard Moissl, Johannes Benkhoff, Carlota Cardoso, Patrícia Gonçalves, Pedro Assis, Rami Vainio, Philipp Oleynik, Arto Lehtolainen, Manuel Grande & Arlindo Marques Space Sci. Rev. 218 (2022) 54 10.1007/s11214-022-00922-2
  121. Tackling the muon identification in water Cherenkov detectors problem for the future Southern Wide-field Gamma-ray Observatory by means of Machine Learning B.S. González, R. Conceição, M. Pimenta, B. Tomé, A. Guillén Neural Computing & Applications 34, pages 5715–5728 (2022) https://doi.org/10.1007/s00521-021-06730-z
  122. P_{\gamma h}^{\alpha} A new variable for γ/h discrimination in large gamma-ray ground arrays R. Conceição, B.S. González, M. Pimenta, B. Tomé Phys.Lett.B 827 (2022) 136969 10.1016/j.physletb.2022.136969
  123. The relation between optical and γ-ray emission in BL Lac sources G La Mura, J Becerra Gonzalez, G Chiaro, S Ciroi, J Otero-Santos Monthly Notices of the Royal Astronomical Society, Volume 515, Issue 4, October 2022, Pages 4810–4827 10.1093/mnras/stac2041
  124. The Mercedes water Cherenkov detector P. Assis, A. Bakalová, U. Barres de Almeida, P. Brogueira, R. Conceição, A. De Angelis, L. Gibilisco, B. S. González, A. Guillén, G. La Mura, L. M. D. Mendes, L. F. Mendes, M. Pimenta, R. C. Shellard, B. Tomé, J. Vícha Eur.Phys.J.C 82 (2022) 10, 899 10.1140/epjc/s10052-022-10857-1
  125. Gamma/hadron discrimination at high energies through the azimuthal fluctuations of the particle distributions at ground R. Conceição, L. Gibilisco, M. Pimenta, B. Tomé JCAP 10 (2022) 086 https://doi.org/10.1088/1475-7516/2022/10/086
  126. Evaluation of the potential of a gamma-ray observatory to detect astrophysical neutrinos through inclined showers Jaime Alvarez-Muñiz, Ruben Conceição, Pedro J. Costa, Mário Pimenta, Bernardo Tomé Phys.Rev.D 106 (2022) 10, 102001 10.1103/PhysRevD.106.102001

Oral Presentations

  1. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Activation of Gemcitabine-Polyester Conjugates in Tumor Tissues. BEB Day 2023 - Science Challenges 2023.
  2. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Xenonucleic acids for advanced therapeutics. Virtual Winter School on Computational Chemistry 2022.
  3. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Catalytic Cycle of the Human Carboxylesterase 2. Virtual Winter School on Computational Chemistry 2022.
  4. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Hydrolysis of cocaine towards less toxic products: a QM/MM approach. BEB Day 2022 - The overview effect 2022.
  5. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Principal Component Analysis of the Human Carboxylesterase 2 Active Site Conformations. BEB Day 2022 - The overview effect 2022.
  6. Beatriz C. Almeida, Jennifer Kaczmarek, Kristala L. Jones Prather and Alexandra T. P. Carvalho. Allosteric transcription factor: essential residues. 8th Annual CCPBioSim Conference - Frontiers in Biomolecular Simulation 2022.
  7. COSTA, P.M. (2022). Marine Biotechnology: Applications in Sustainability and Medicine: prospects and tools for bioprospecting. VII Semana da Bioengenharia. Instituto Superior Técnico da Universidade de Lisboa, Lisboa (Portugal), March 2022 (invited speaker).
  8. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology. Dutch Society of Toxicology, Maastricht (Netherlands), September 2022.
  9. RODRIGO, A.P., GONÇALVES, C., MOUTINHO CABRAL, I., MARTINS, C., D'Ambrosio, M., MADEIRA, C., COSTA P.M. (2022). Advances in the bioprospecting for novel bioreactives from marine invertebrates: Multi-omics and computational strategies. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022. (Invited speaker)
  10. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., FERNANDES, J.F., MISSIONÁRIO, M., TRAVESSO, M., GROSSO, A.R., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Goby fish populations in intertidal environments: gene networks and epigenetic regulators modulating energy metabolism in response to seasonal warming and local climate regimes. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022.
  11. MISSIONÁRIO, M. (2022). Marine shallow waters as climate change hotspots - multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. UCIBIO BioSeminars. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), December 2022.
  12. Biomolecular Simulations in the Age of Information EUGLOH Research Conference "Global Health Challenges: Advances in E-Health” 2022/11/21 – (University of Lund, Sweden) (online)
  13. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  14. BioSIM - Application of Biomolecular Simulations in the Study of Biofilms Biofilms@UP – A Investigação em Biofilmes na Universidade do Porto 2022/09/15 – (University of Porto, Portugal)
  15. herapy for Genetic Diseases: The Computer as a Tool to Address Genetic Variability VirCo 2022 Meeting “Understanding genetics: a key to a Healthier GENEration” organized by the Portuguese Pharmaceutical Students’ Association (APEF) and by the Croatian Pharmacy and Medical Biochemistry Students Association (CPSA) and that 2022/05/21 (online)
  16. Employing Biomolecular Simulations for a Molecular Understanding of Human Diseases 2nd Workshop “From In Silico to Animal Models for the Study of Human Diseases” 2022/04/20 - University of Aveiro (Portugal)
  17. QM/MM Methods and Protein Ligand Docking: Fundamentals and Applications Ciclo de Seminários, M.Sc. in Computational Biology 2022/04/07 - Invited by Prof. Irina Moreira (Univ Coimbra, Portugal)
  18. Application of QM/MM Methods for Rational Enzyme Engineering of New Biocatalysts: Fighting the Three Demons Les Houches – TSRC Protein Dynamics CECAM Meeting 2022/05/23 – (Aussois, France)
  19. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  20. 2022/10/27 Bioseparation and Materials - Introduction to affinity ligands Pure Winter School 2022 University of Bayreuth (Bayreuth, Germany)

Proceeding in international conferences

  1. Title: Distal edge determination for a multi-slat prompt-gamma camera: Irradiation with a 200-MeV proton beam
    • date: 2022-02-11
    • Authors: H. Simões, A. Morozov, J. Silva, J. Teodoro, P. Crespo
  2. Title: Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting
    • date: 2022-02-10
    • Authors: Sara Mesquita, Lília Perfeito, João Loureiro and Joana Gonçalves-Sá
    • Conference: NetSciX 2022 - International School and Conference on Network Science Porto, Portugal
  3. Title: Sensitivity to neutrinoless double beta decay of 136Xe with a third generation TPC dark matter experiment
    • date: 2022-06-01
    • Authors: A. Lindote and I. Olcina
    • Conference: Neutrino 2022, Seoul, Korea (virtual)
  4. Title: Neutrino physics with the LUX-ZEPLIN Detector
    • date: 2022-05-31
    • Authors: Paulo Brás (on behalf of LZ Collaboration)
    • Neutrino 2022 Seul,Coreia (virtual)
  5. Title: Deciphering Jet Quenching Effects with Novel Reclustering Tool
    • date: 2022-04-06
    • Authors: Liliana Apolinario, Pablo Rodriguez, Korinna Zapp
    • Conference: Quark Matter 2022 Krakow, Poland (remote)
  6. Title: Timing RPC for thermal neutron detection with 3D position sensitivity
    • date: 2022-09-26
    • Conference: XVI Workshop on Resistive Plate Chambers and Related Detectors CERN, 26–30 Sept 2022
  7. Title: Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  8. Title: Improving count rate capability of timing RPCs by increasing the detector working temperature
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  9. Title: Large Field CdTe Monitor for Astrophysics and TGF Science on board the Space Rider
    • date: 2022-11-07
    • Authors: R. M. Curado Da Silva, J. M. Maia, J. Sousa, P. Póvoa, J. Mingacho, G. Falcão, J. Gonçalves, G. Salgado, M. Moita
    • Conference: IEEE Nuclear Science Symposium Milano, Italy
  10. Title: Dual-Polarity Ion Drift Chamber: Experimental results with Xe-SF6 mixtures
    • date: 2022-05-22
    • Authors:
    • Conference: place:
  11. Title: Between even and odd: probing the CP-nature of the Higgs-Top Yukawa coupling date: 2022-07-08
    • conference: International Conference on High Energy Physics (ICHEP 2022) Bologna, Italy
  12. Title: The microevolution of information on social media
    • date: 2022-10-20
    • Authors: Lília Perfeito and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  13. Title: Flu or Not: A computational approach to respiratory-disease surveillance before and after COVID-19
    • date: 2022-10-20
    • Authors: Eleonora Tulumello, Sara Mesquita, Lilia Perfeito, Irma Varela-Lasheras and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  14. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • Conference: EPH - 15th European Public Health Conference 2022 Berlin, Germany
  15. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • conference: [3C] Cells, Computers & Clinics Oeiras, Portugal
  16. Title: Proton Multi-Beam FLASH Radiotherapy: Combining FLASH and IMPT
    • date: 2022-11-30
    • Authors: Joana Leitão, João Seco, Patrícia Gonçalves
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  17. Title: Monte Carlo Modeling of Inter-Track Radical Reactions for FLASH
    • date: 2022-11-30
    • Authors: Miguel Molina, Yujie Chi, T. Zhang, Patrícia Gonçalves and João Seco
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  18. Title: Simulation of a multi-slat prompt-gamma camera for proton beam distal edge determination during pelvic irradiation
    • date: 2022-11-05
    • Authors: J. Silva, H. Simões, A. Morozov, J. Teodoro, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italymulti-slat
  19. Title: Simulation of proton range monitoring in an anthropomorphic phantom using a multi-slat prompt-gamma camera
    • date: 2022-11-05
    • Authors: J. Teodoro, H. Simões, A. Morozov, J. Silva, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italy
  20. Title: Positron emission tomography for proton range verification in proton radiation therapy
    • date: 2022-11-05
    • Authors: S.P. Tavernier, R. Bugalho, F. Caramelo, J.P. Cesar, P.Crespo, J.C. Da Silva, L. Ferramacho, N. Ferreira, P. Gonçalves, D.Grosshans, B. Jesus, K.Klein, K. Lang, C. Layden, C. Leong, W. Matava,A. Mozorov, F. Poenisch, M. Proga, N. Sahoo, J. Seco, H. Simões, R.Silva, M. Silveira, J. Varela
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Nov. 5 - 12, Milano, Italy
  21. Dias, Ana; Moreira, Inês Pimentel; Lychko, Iana; Nurrito, Arianna; Barbosa, A.J.M.; Lutz-Bueno, Viviane; Mezzenga, Raffaele; et al. Corresponding author: Roque, Ana Cecília Afonso. "Hierarchical Self-Assembly of the Reflectin-Derived Protopeptide". Preprint. 2023. http://dx.doi.org/10.2139/ssrn.4406145. 10.2139/ssrn.4406145
  22. Studying mass generation for gluons Gernot Eichmann, Jan M. Pawlowski (selected for Editor's choice) SciPost Phys.Proc. 6 (2022) 018 https://doi.org/10.48550/arXiv.2112.08058

Posters (international meetings)

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022). Bioprospecting marine environments for unravelling novel drugs: Transcriptomics and interactome-directed analyses of two toxin-secreting Polychaeta. 1st Egas Moniz One Health Symposium.
  2. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., MISSIONÁRIO, M., FERNANDES, J.F., TRAVESSO, M., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Transcriptome profiling of the common goby Pomatoschistus microps exposed to seasonal warming reveals gene downregulation as an energy-saving mechanism to cope with thermal stress. 1st Egas Moniz One Health Symposium.
  3. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology.
  4. GONÇALVES, C., COSTA, P.M. (2022). Unravelling cephalopod venom glands through histological and transcriptomic approaches. Encontro Ciência’22.
  5. Barbosa, A.J.M.; Arianna Nurrito; Ana Margarida Dias; Soares, Cátia; Lychko, Iana; Roque, ACA. "Modeling studies of reflectin de novo peptide assembly". Paper presented in 15th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 2023.
  6. Carlos Costa; Barbosa, A.J.M.; Ana Margarida Dias; Roque, ACA. "Affinity reagents towards the SARS-CoV-2 spike protein". Paper presented in BPP2022 Biopartitioning & Purification Conference, 2022.

Posters (national meetings)

  1. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. (2022). Advances on the venom glands of Cephalopoda: Targets for the prospecting of novel bioactives. UCIBIO Scientific Advisory Board Meeting.
  2. Title: Detecting land-surface changes from space: Porting the Aqua Monitor application from Google Earth Engine
    • date: 2022-03-22
    • Authors: B. Backeberg, Z. Benta, M. David, G. Donchyts, J. Gomes, T.Gonçalves, J. Langemeijer, J. Pina, M. Viana
    • Conference: First Copernicus National Conference Évora, Portugal

Thesis / Dissertation

PhD Thesis

Finished

  1. On the measurement and interpretation of the fluxes of galactic cosmic-ray nuclei Eduardo Bueno (https://doi.org/10.33612/diss.253636377)
  2. Guilherme Guedes A global approach to physics beyond the Standard Model (https://hdl.handle.net/10481/76867)
  3. Ana Sofia Inácio Measurement of the 130 Te Two-Neutrino Double Beta Decay Half-life with the SNO+ Experiment
  4. Maria Ramos The interplay between collider and astrophysical probes of non-minimal composite Higgs models (https://digibug.ugr.es/bitstream/handle/10481/72877/95029%281%29.pdf?sequence=4)
  5. Correia, M.J. 2022. Tools for the management and conservation of the European eel (Anguilla anguilla): An application to Santo André lagoon. Faculdade de Ciências, Universidade de Lisboa, 203 pp. Submitted in May 2022.

Ongoing

  1. Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment

  2. Miguel Orcinha Estudo da modulação Solar no fluxo de raios cósmicos com dados da experiência AMS

  3. The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho (UL/FCUL)

  4. Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás (UL/IST)

  5. Developing Multi-Beam FLASH with Proton Beams Joana Leitão (UL/IST)

  6. Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira (UL/IST)

  7. Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado (UL/IST)

  8. Raios Cósmicos: desenvolvimento de módulos de divulgação através design participativo Luís Afonso

  9. Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco (UL/IST)

  10. Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues (UL/FCUL)

  11. Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes (UL/IST)

  12. Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares (UL/IST)

  13. Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves (UL/IST)

  14. Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes (U.Minho)

  15. Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe (UL/FCUL)

  16. Jetography in Heavy Ion Collisions André Cordeiro (UL/IST)

  17. AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza (U.Minho)

  18. Study of lepton universality in top quarks pairs events Giacomo Da Molin (UL/IST)

  19. Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa (UL/IST)

  20. The Partonic Structure of Hadrons Eduardo Ferreira (UL/IST)

  21. Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro (UL/IST)

  22. Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli (UL/FCUL)

  23. Differential tracking on disinformation websites and its impact on search engine results Íris Damião (UL/IST)

  24. Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud (U.Coimbra, IDPASC PT-CERN Call 2022/1)

  25. Beatriz C. Almeida, Ricardo S.V. Pires, Kristala L.J. Prather, and Alexandra T.P. Carvalho. The role of zing in transcription factor allosteric regulation.

  26. Ricardo D. González, Warispreet Singh, Lino Ferreira, and Alexandra T.P. Carvalho. Enzymatic synthesis of RNA-peptide conjugates as potential therapeutics for COVID-19.

  27. Inês Carvalho Leonardo (2020.08210.BD)

  28. 2021.07128.BD - Fábio Martins - Rational Development of Nanomedicines for Cardiovascular Diseases.

  29. 2020.09087.BD - Rita Magalhães - In Silico Optimization of Biocatalysts for Plastic Biodegradation.

  30. SFRH/BD/147276/2019 - Susana Maria da Fonseca Fernandes - Development of biocidal formulations for effective biofouling control.

  31. SFRH/BD/136594/2018 - André Figueiredo Pina - Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.

  32. SFRH/BD/137844/2018 - Claudia Tatiana Freitas Vieira - New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

  33. SFRH/BD/136746/2018 - Juliana Ferreira Rocha - Rational development of new biocatalysts for the production of Parkinson Disease Drugs.

  34. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.

Master Thesis

Finished

  1. João Antunes Particle reconstruction in large liquid scintillator detectors using charge and time signal modelization - the SNO+ neutrino physics experiment (UL/IST)
  2. Daniel Neacsu Dark matter searches at the LHC in models with extended scalar sectors
  3. Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
  4. Fátima Alcaso Design and optimisation of a xenon TPC with SiPM readout for neutrinoless double beta decay studies
  5. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
  6. António Oliveira Unsupervised machine learning techniques in high energy physics
  7. Beatriz Artur Impact of Quark-Gluon Plasma in Extensive Air Showers (https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/1972678479055537) )
  8. Rita Silva Optimisation studies for the pion-induced Drell-Yan measurement at the AMBER experiment (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502847)
  9. Henrique Neves From the Concept to Development of Astrophysics Payloads for Gamma Radiation Studies (U.Coimbra)
  10. Carlota Cardoso Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury (UL/IST )
  11. Francisco Barba Characterization of thin silicon strip detectors for nuclear experiments (UL/FCUL http://hdl.handle.net/10451/53658)
  12. André Torcato Heavy-baryon spectroscopy in a quark-diquark 1. approach (UL/FCUL http://hdl.handle.net/10451/51871)
  13. David Almeida PandeMedia: an annotated corpus of digital media for issue salience (UL/FCUL http://hdl.handle.net/10451/55576)
  14. Matilde Santos Caracterização e teste funcional de um micro dosímetro de fibras ópticas cintilantes (UL/FCUL http://hdl.handle.net/10451/53766)
  15. Nísia Fernandes Estudo da radiossensibilização de células tumorais do pâncreas com nanopartículas (http://hdl.handle.net/10451/51982)
  16. José Rodrigues Embedded systems for heating and machine learning in microcontrollers (U.Coimbra)
  17. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/left21/dissertacao/565303595502771)
  18. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502772)
  19. NUNES, M. (2022). Gene networks modulating heat acclimatization in common gobies: influence of latitude and season in fish metabolism and health. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Carolina Madeira and Pedro M. Costa.
  20. MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Pedro M. Costa and Ana Rita Grosso.
  21. Brandão, P.R. 2022. Portuguese estuarine systems and their essential ecological role for some fish species: trends and predictions in face of global changes. Mestrado em Ecologia Marinha, Universidade de Lisboa, Faculdade de Ciências. 61 pp.
  22. Santos, Gil, 2022. Activity patterns and tridimensional space use of the European catfish (Silurus glanis) on Belver reservoir.  Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 57 pp. http://hdl.handle.net/10451/51885
  23. Almeida, J. 2022. Trace Metals in the Sado Estuary and their implications on the Environmental Quality. Mestrado em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa, 103 pp. Submitted in July 2022.

Ongoing

  1. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  2. Carolina Felgueiras Simulations and benchmark of a fast neutron detector for nuclear astrophysics (UL/FCUL)
  3. Magda Duarte Development of high-resolution, three-dimensional muographies (U.Minho)
  4. Joana Vences Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations
  5. Simão Costa Quark hadronization with B mesons at the LHC (UL/IST)
  6. André Neves Astrofísica Multi-Mensageira com o Telescópio AMEGO da NASA (U.Coimbra)
  7. Francisca Santos Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission (UL/IST)
  8. Francisco Barreiro Geometrical aspects of jet quenching in small systems
  9. Manuel Mariano Sensitivity of jet sub-structure observables to jet quenching in collisions of light nuclei (UL/IST)
  10. Tomás Almeida Design of a phantom for radiobiology studies (UL/FCUL)
  11. Igor Gago Life prospection on Mars - Studing the Martian Subsurface Radiation Environment (UL/IST)
  12. João Pires Deep Neural Netwoers in Experimental Data Analyses (UL/FCUL)
  13. Milton Freitas Measurement of the number of muons in high occupancy MARTA stations (UL/IST)
  14. Lia Pereira Modelling protein amyloid structures and observing the effects of radiation using the GEANT4-DNA toolkit (UL/FCUL)
  15. João Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework (UL/FCUL)
  16. Tomás Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR
  17. Rita Pestana Development of a standard methodology for online dose calculation in air (UL/FCUL)
  18. Henrique Legoinha Probing the properties of the plasma of quarks and gluons with heavy flavour (UL/IST)
  19. Joana Reis Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider (UL/FCUL)
  20. Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT (UL/FCUL)
  21. Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC (U.Coimbra)
  22. Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0𝝂2β decay of Xe-136 (U.Coimbra)
  23. Gulherme Calé Jet jet correlations in QCD (UL/FCUL)
  24. Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider (U.Minho)
  25. José Cordeiro Development of an FPGA-accelerated clustering for the ATLAS trigger system (UL/IST)
  26. Catarina Pereira Performance of the TileCal High Voltage Upgrade System (UL/FCUL)
  27. Pedro Lagarelhos Prospects for the HL-LHC of the measurement of the top quark couplings in the ttbar semileptonic channel (UL/IST)
  28. Ana Campos Estudo da dispersão de partículas alfa em filmes finos (UL/FCUL)
  29. Guilherme Crispim Pre-equilibrium of the Quark-Gluon Plasma (UL/IST)
  30. Miguel Lopes Integration of the HiRezBrainPET with a clinical PET/CT system - Image performance evaluation of a prototype for next-generation brain tomography (UL/IST)
  31. Maria Borges Beam tests of a scintillation array detector for high-resolution dosimetry (UL/IST)
  32. Fábio Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro (UL/FCUL)
  33. Marco Leitão Disentangling QGP response using energy flow correlators (UL/IST)
  34. António carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans (U.Coimbra)
  35. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  36. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST)
  37. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST)
  38. Ana Filipa Fernandes (MSc in Biotechnology / FCT-NOVA)

Patents

  1. EP21306547 / BNT231376EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, S. Routier - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (Indole derivaties) 04 November 2021
  2. EP21306521 / BNT231394EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, M. Teulade-Fichou, R. Lartia, G. Bordeau - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (triphenylamine derivatives) 29 October 2021
  3. Alexandra T.P. Carvalho, Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek J. Quinn, Thomas S. Moody, Andreia F. Sousa, and Armando J.D. Silvestre. Novel Variants of Hyperthermophilic Carboxylesterase for Polymer Synthesis (PCT/IB2022/051111) 2022.

Datasets

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Glycera alba. Direct submission to GenBank – Accession OL606744
  2. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Serine protease inhibitor Kazal-type from Glycera alba. Direct submission to GenBank – Accession OL606745
  3. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich secretory protein from Hediste diversicolor. Direct submission to GenBank – Accession OL606746
  4. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Thyrostimulin beta-5 subunit from Hediste diversicolor. Direct submission to GenBank – Accession OL606747
  5. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Glycera alba. Direct submission to GEO – Accession GPL31947
  6. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Hediste diversicolor. Direct submission to GEO – Accession GPL31948
  7. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Sepia officinalis. Direct submission to GenBank - Accession number: OP198203 (under publication embargo)
  8. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. SE-cephalotoxin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198204 (under publication embargo)
  9. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Venom Insulin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198205 (under publication embargo)
  10. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209720 (under publication embargo)
  11. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein (latisemin-like) from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209721 (under publication embargo)
  12. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Chitinase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209722 (under publication embargo)
  13. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Hyaluronidase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209723 (under publication embargo)
  14. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Cysteine-rich venom protein from Eulalia sp. Direct submission to GenBank – Accession OP254189 (under publication embargo)
  15. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12A from Eulalia sp. Direct submission to GenBank – Accession OP254190 (under publication embargo)
  16. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12B from Eulalia sp. Direct submission to GenBank – Accession OP254191 (under publication embargo)
  17. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M13 from Eulalia sp. Direct submission to GenBank – Accession OP254192 (under publication embargo)
  18. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Serine protease from Eulalia sp. Direct submission to GenBank – Accession OP254193 (under publication embargo)
  19. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Hyaluronidase from Eulalia sp. Direct submission to GenBank – Accession OP254194 (under publication embargo)
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