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2024

International articles with referee

  1. Melnik, T., Sinval, J., Pinho, V. D. de, Junior, J. A. S. H., Oliveira, M. da S., & Lopes, F. M. (2025). Knowledge and use of evidence-based practice in psychology in the clinical practice of Brazilian psychologists: A cross-sectional study. Healthcare, 13(4), 1–18. https://doi.org/10.3390/healthcare13040431

  2. Nevado B, Atchison GW, Bridges EL, Orzell S, Filatov D, Hughes CE. Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Paplionoideae) in Florida. Molecular Ecology (accepted).

  3. Andrade, R., Laranjeiro, N., & Vieira, M. (2024). BugHub: A Large Scale Issue Report Dataset. In 19th European Dependable Computing Conference - EDCC, accepted for publication. Leuven.

  4. Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Correlates of burnout and dropout intentions in medical students: A cross-sectional study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.08.003

  5. "Leveraging LLMs for On-the-fly Instruction Guided Image Editing" dos autores Rodrigo Santos, João Silva e António Branco EPIA 2024, International Conference on Artificial Intelligence (https://doi.org/10.48550/arXiv.2403.08004)

  6. Morais, I., Carneiro, F. A., Sinval, J., Costa, P. A., & Leal, I. (2024). The Walsh Family Resilience Questionnaire: Validity evidence from Portugal. Family Relations. https://doi.org/10.1111/fare.13078

  7. Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Exploring the impact of depression, anxiety, stress, academic engagement, and dropout intention on medical students’ academic performance: A prospective study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.09.116

  8. Melo, L. E. A. de, Sinval, J., & Isler, C. A. (2025). Prospective avenues in travel behavior research supported by the cognitive dissonance theory: A scoping review. Transportation Research Part F: Traffic Psychology and Behaviour, 109, 501–519. https://doi.org/10.1016/j.trf.2024.12.022

  9. Galamba, N., Sickle Cell Hemoglobin “Drugged” with Cyclic Peptides is Aggregation Incompetent, J. Phys. Chem. B, 128, 36, 8662, 2024 URL: https://doi.org/10.1021/acs.jpcb.4c03805

  10. Martins, G., Galamba, N., Wild Type α-Synuclein Structure and Aggregation: A Comprehensive Coarse-Grained and All-Atom Molecular Dynamics Study, J. Chem. Inf. Model., 64, 15, 6115, 2024 URL: https://doi.org/10.1021/acs.jcim.4c00965

  11. Gomes I., Martins, G., Galamba N., Essential Dynamics of Ubiquitin in Water and in a Natural Deep Eutectic Solvent, Phys. Chem. Chem. Phys., 26, 18244, 2024 URL: htps://pubs.rsc.org/en/Content/ArticleLanding/2024/CP/D4CP01773K

  12. Iana Lychko; Cátia Lopes Soares; Barbosa, A.J.M.; Tomás Rosa Calmeiro; Rodrigo Ferrão de Paiva Martins; Ana Margarida Gonçalves Carvalho Dias; Ana Cecília Afonso Roque. "Kinetics of charge-dependent reversible condensation of reflectin nanostructures". Materials Advances (2024): https://doi.org/10.1039/D4MA00788C.

  13. In silico identification of novel PqsD inhibitors: promising molecules for quorum sensing interference in Pseudomonas aeruginosa – Tatiana F. Vieira; Nuno M. F. S. A. Cerqueira; Manuel Simões; Sérgio F. Sousa – Molecular Systems Design & Engineering – 2024 – 10.1039/D3ME00107E

  14. The fungicide cymoxanil impairs respiration in Saccharomyces cerevisiae via cytochrome oxidase inhibition – Filipa Mendes; Cátia Santos-Pereira; Tatiana F. Vieira; Mélanie Martins Pinto; Bruno B. Castro; Sérgio F. Sousa; Maria João Sousa; Anne Devin; Susana Chaves – FEBS Letters – 2024 – 10.1002/1873-3468.14907

  15. Dual action of benzaldehydes: Inhibiting quorum sensing and enhancing antibiotic efficacy for controlling Pseudomonas aeruginosa biofilms – Miguel M. Leitão; Tatiana F. Vieira; Sérgio F. Sousa; Fernanda Borges; Manuel Simões; Anabela Borges – Microbial Pathogenesis – 2024 – 10.1016/j.micpath.2024.106663

  16. Montelukast and cefoperazone act as antiquorum sensing and antibiofilm agents against Pseudomonas aeruginosa – Tatiana F Vieira; Miguel M Leitão; Nuno M F S A Cerqueira; Sérgio F Sousa; Anabela Borges; Manuel Simões – Journal of Applied Microbiology – 2024 – 10.1093/jambio/lxae088

  17. In silico-guided discovery and in vitro validation of novel sugar-tethered lysinated carbon nanotubes for targeted drug delivery of doxorubicin – Fábio G. Martins; Chanchal Kiran Thakur; Chandrabose Karthikeyan; Subhasmita Bhal; Chanakya Nath Kundu; N. S. Hari Narayana Moorthy; Sérgio F. Sousa – Journal of Molecular Modeling – 2024 https://doi.org/10.1007/s00894-024-06061-5

  18. Protocol for in silico characterization of natural-based molecules as quorum-sensing inhibitors – Susana Fernandes; Mariana Sousa; Fábio G. Martins; Manuel Simões; Sérgio F. Sousa – STAR Protocols – 2024 – http://dx.doi.org/10.1016/j.xpro.2024.103367

  19. Protocolo de Bioinformática para ensino de estrutura e função de proteínas. Roggero, A., Nicodemo, I., Annunciato, I., da Silva Fernandes, P. H., Mota, V., & Toyama, M. H. (2024). Revista de Ensino de Bioquímica, 22(2), 119-136. https://doi.org/10.16923/reb.v22i2.1088

  20. Structural insights of an LCP protein–LytR–from Streptococcus dysgalactiae subs. dysgalactiae through biophysical and in silico methods - J Paquete-Ferreira, F Freire, HS Fernandes, J Muthukumaran, J Ramos, et al. Frontiers in Chemistry 12, 1379914, 2024 https://doi.org/10.3389/fchem.2024.1379914 Evaluation of the impact of two C5 genetic variants on C5-eculizumab complex stability at the molecular level - VP Peixoto, C Prudêncio, M Vieira, SF Sousa, Journal of Biomolecular Structure and Dynamics, 1-10, 2024, https://doi.org/10.1080/07391102.2024.2331091

  21. Exploiting Locusta migratoria as a source of bioactive peptides with anti-fibrosis properties using an in silico approach (vol 15, pg 493, 2024) CSS Teixeira, R Biltes, C Villa, SF Sousa, J Costa, IM Ferreira, I Mafra - FOOD & FUNCTION 15 (5), 2773-2773, https://doi.org/10.1039/D3FO04246D

  22. Glucocorticoid receptor-dependent therapeutic efficacy of tauroursodeoxycholic acid in preclinical models of spinocerebellar ataxia type 3 - S Duarte-Silva, JD Da Silva, D Monteiro-Fernandes, MD Costa, SF Sousa et al. The Journal of clinical investigation 134 (5) (2024) 10.1172/JCI162246

  23. Substitution models of protein evolution with selection on enzymatic activity D Ferreiro, R Khalil, SF Sousa, M Arenas, Molecular Biology and Evolution 41 (2), 2024 msae026 https://doi.org/10.1093/molbev/msae026

  24. Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation - R Soares, L Azevedo, V Vasconcelos, D Pratas, SF Sousa, J Carneiro - Journal of Chemical Information and Modeling 64 (24), 9576-9593 https://doi.org/10.1021/acs.jcim.4c00995

  25. Advances in structure-based drug design targeting membrane protein markers in prostate cancer - Batista- Silva J.P., Gomes D., Sousa S.F., Sousa Â., Passarinha L.A. - Drug Discovery Today, 2024, 29(9): 104130 https://doi.org/10.1016/j.drudis.2024.104130

  26. Structural insights and photophysical properties of mononuclear and pentanuclear Zn(II) acetate complexes with pyridyl-based thiazolyl-hydrazones - Araškov J.B., Garcia-Sosa A.T., Višnjevac A., Sousa S.F., Holló B.B., Uğuz Ö., Koca A., Monge M., Rodríguez-Castillo M., López-de-Luzuriaga J.M., Todorović T.R., Filipović N.R. - Polyhedron, 2024, 262: 117162 https://doi.org/10.1016/j.poly.2024.117162

  27. In silico analysis of aptamer-RNA conjugate interactions with human transferrin receptor Vasconcelos D., Pina A., Habib N., Sousa S.F. - Biophysical Chemistry, 2024, 314: 107308 https://doi.org/10.1016/j.bpc.2024.107308

  28. LC-ESI-UHR-QqTOF-MS/MS profiling and anti-inflammatory potential of the cultivated Opuntia ficus-indica (L.) Mill. and the wild Opuntia stricta (Haw.) Haw. fruits from the Algerian region - Zeghbib W., Boudjouan F., Carneiro J., Oliveira A.L.S., Sousa S.F., Pintado M.E., Ourabah A., Vasconcelos V., Lopes G. - Food Chemistry, 2024, 460: 140414 https://doi.org/10.1016/j.foodchem.2024.140414

  29. Design, synthesis, and pharmacological evaluation of heteroaryl thiol-linked kojic acid derivatives as a novel class of acetylcholinesterase inhibitors for Alzheimer’s disease therapy - Singh M., Karthikeyan C., Waiker D.K., Tiwari A., Shrivastava S.K., Sousa S.F., Kiriwan D., Martins F.G., Moorthy N.S.H.N. - 3 Biotech, 2025, 15(5): 134 https://doi.org/10.1007/s13205-025-04295-5

  30. A comprehensive update of genotype–phenotype correlations in PMM2-CDG: insights from molecular and structural analyses - Oliveira T., Ferraz R., Azevedo L., Quelhas D., Carneiro J., Jaeken J., Sousa S.F. - Orphanet Journal of Rare Diseases, 2025, 20(1): 207 https://doi.org/10.1186/s13023-025-03669-5

  31. Design and biological evaluation of 2-phenylquinoxaline carbonyl piperazine derivatives as novel FASN inhibitors with anticancer activity - S Singh, S Paul, FG Martins, SF Sousa, CN Kundu, C Karthikeyan, - Bioorganic Chemistry, 2025, 10869 https://doi.org/10.1016/j.bioorg.2025.108697

  32. Two cinnamic acid derivatives as inhibitors of Pseudomonas aeruginosa las and pqs quorum-sensing systems: Impact on biofilm formation and virulence factors - MM Leitão, ASC Gonçalves, SF Sousa, F Borges, M Simões, A Borges, Biomedicine & Pharmacotherapy 2025, 187, 118090 https://doi.org/10.1016/j.biopha.2025.118090

  33. Gonçalves, C., Moutinho Cabral, I., Alves de Matos, A.P., Grosso, A.R. and Costa, P.M. (2024). Transcriptome profiling of the posterior salivary glands of the cuttlefish Sepia officinalis from the Portuguese West coast. Front. Mar. Sci. 11, 1362824. doi:10.3389/fmars.2024.1362824

  34. Martins, C., Carvalho, L.M., Moutinho Cabral, I., Saúde, L., Dreij, K. and Costa, P.M. (2024). A mechanistic study on the interaction effects between legacy and pollutants of emerging concern: A case study with B[a]P and diclofenac. Environ Pollut. 363, 125189. doi:10.1016/j.envpol.2024.125189

  35. Rodrigo, A.P., Moutinho Cabral, I., Alexandre, A. and Costa, P.M. (2024). Exploration of toxins from a marine annelid: An analysis of phyllotoxins and accompanying bioactives. Animals (Basel). 14, 635. doi:10.3390/ani14040635

  36. Feature Selection Techniques for CR Isotope Identification with the AMS-02 Experiment in Space Marta Borchiellini, Leandro Mano, Fernando Barão e Manuels Vecchi Particles 2024, 7(2), 417-434 2024-04-11 https://doi.org/10.3390/particles7020024

  37. Properties of Cosmic Deuterons Measured by the Alpha Magnetic Spectrometer AMS Collaboration (248 authors) Phys. Rev. Lett. 132 (2024) 261001 10.1103/PhysRevLett.132.261001

  38. Probing the 𝐶𝑃 nature of the top–Higgs Yukawa coupling in 𝑡 ̄ 𝑡𝐻 and 𝑡𝐻 events with 𝐻 → 𝑏 ̄ 𝑏 decays using the ATLAS detector at the LHC ATLAS Collaboration (A. L. Carvalho, E. Gouveia, R. Gonçalo, A. Onofre, et al) Phys. Lett. B 849 (2024) 138469 10.1016/j.physletb.2024.138469

  39. Simulation-based inference in the search for CP violation in leptonic WH production R. Barrué, P. Conde Muíño, V. Dao, R. Santos J. High Energ. Phys. 2024, 14 2024-03-13 https://doi.org/10.1007/JHEP04%282024%29014

  40. Combination of searches for heavy spin-1 resonances using 139 fb−1 of proton-proton collision data at \sqrt{s}=13 TeV with the ATLAS detector ATLAS Collaboration (Inês Ochoa et al) J. High Energy Phys. 4 (2024) 118 10.1007/JHEP04(2024)118

  41. The ATLAS Experiment at the CERN Large Hadron Collider: A Description of the Detector Configuration for Run 3 ATLAS Collaboration (R. Pedro et al.) J. Instrum. 19 (2024) P05063 2023-05-26 10.1088/1748-0221/19/05/P05063

  42. Search for invisible particles produced in association with single top quarks in proton-proton collisions at s√=13 TeV with the ATLAS detector ATLAS Collaboration (M. Barros, N. Castro, R. Pedro et al. ) JHEP 05 (2024) 263 10.1007/JHEP05%282024%29263

  43. Search for singly produced vector-like top partners in multilepton final states with 139 $mathrm{fb}^{-1}$ of $pp$ collision data at $sqrt{s} = 13$ TeV with the ATLAS detector ATLAS Collaboration (N. Castro, T. Vale) Phys. Rev. D 109 (2024) 112012 2024-06-11 10.1103/PhysRevD.109.112012

  44. The ATLAS trigger system for LHC Run 3 and trigger performance in 2022 ATLAS Collaboration (R. Barrué, P. Conde Muíño, I. Ochoa et al. ) 2024 JINST 19 P06029 2024-05-28 10.1088/1748-0221/19/06/P06029

  45. Asymmetries in invisible dark matter mediator production associated with tt final states Esteban Chalbaud, Rui Miguel Silva, António Onofre, Ricardo Gonçalo, Miguel C. N. Fiolhais Phys. Rev. D 110, 076016 10.1103/PhysRevD.110.076016

  46. Operation and performance of the ATLAS tile calorimeter in LHC Run 2 ATLAS Collaboration (TileCal/LIP group et al.) Eur. Phys. J. C 84 (2024) 1313 2024-09-01 10.1140/epjc/s10052-024-13151-4

  47. The Pierre Auger Observatory Open Data The Pierre Auger Collaboration Eur. Phys C. 2024-09-30

  48. Ground observations of a space laser for the assessment of its in-orbit performance The Pierre Auger Collaboration Optica 11 (2024) 263-272 2023-12-05 doi.org/10.1364/OPTICA.507619

  49. Proton-air interactions at ultra-high energies in muon-depleted air showers with different depths L.Cazon, R.Conceição, M.A.Martins, F.Riehn Phys. Lett. B 859 (2024) 139115 2024-11-01 https://doi.org/10.1016/j.physletb.2024.139115

  50. Study of central exclusive production processes by proton-proton collisions at 13 TeV with the CMS experiment Matteo Pisano (for the CMS Collaboration) Nuovo Cim. C 47 (2024) 81 2024-03-18 10.1393/ncc/i2024-24081-4

  51. Development of the CMS detector for the CERN LHC Run 3 CMS Collaboration (2535 authors) JINST 19 (2024) 05, P05064 2023-11-06 10.1088/1748-0221/19/05/P05064

  52. Search for central exclusive production of top quark pairs in proton-proton collisions at 13 TeV with tagged protons CMS and TOTEM collaborations JHEP 06 (2024) 187 2024-05-20

  53. A Novel Diamond-like Carbon based photocathode for PICOSEC Micromegas detectors X.Wang, M.Gallinaro et al. J. Instrum. 19 (2024) P08010 2024-08-01 10.1088/1748-0221/19/08/P08010

  54. Measurement of the polarizations of prompt and non-prompt J/psi and psi(2S) mesons produced in pp collisions at 13 TeV CMS collaboration Phys. Lett. B 858 (2024) 139044 2024-10-07

  55. Optimization of LYSO crystals and SiPM parameters for the CMS MIP timing detector A.Boletti, M.Gallinaro, J.Varela et al. JINST 19 (2024) 12, P12020 2024-10-11

  56. PICOSEC-Micromegas Detector, an innovative solution for Lepton Time Tagging A. Kallitsopoulou, M.Gallinaro et al. Nucl.Instrum.Meth.A 1069 (2024) 169920 2024-10-16

  57. TOFHIR2: the readout ASIC of the CMS barrel MIP Timing Detector E. Albuquerque et al. JINST 19 (2024) 05, P05048 2024-10-31 10.1088/1748-0221/19/05/P05048

  58. Constraints On Covariant WIMP-Nucleon Effective Field Theory Interactions from the First Science Run of the LUX-ZEPLIN Experiment J. Aalbers et al. (LZ Collaboration) Phys. Rev. Lett. 133, 221801 (2024) https://doi.org/10.1103/PhysRevLett.133.221801

  59. Two-neutrino double electron capture of 124Xe in the first LUX-ZEPLIN exposure J. Aalbers et al. Journal of Physics G: Nuclear and Particle Physics, Volume 52, Number 1 (2024) 2024-11-08 10.1088/1361-6471/ad9039

  60. A next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. Journal of Physics G- Nuclear and particle Physics 50, 013001 (2023) 2024-07-26 10.1088/1361-6471/ac841a

  61. Event generators for high-energy physics experiments J.M. Campbell, et. al. SciPost Phys. 16 (2024) 5, 130 10.21468/SciPostPhys.16.5.130

  62. Software Quality Assurance as a Service: Encompassing the Quality Assessment of Software and Services Samuel Bernardo, Pablo Orviz, Mario David, Jorge Gomes, David Arce, Diana Naranjo, Ignacio Blanquer, Isabel Campos, Germán Moltó, Joao Pina Future Generation Computer Systems, 2024, ISSN 0167-739X 2024-03-12 10.1016/j.future.2024.03.024

  63. Event-by-Event Direction Reconstruction of Solar Neutrinos in a High Light-Yield Liquid Scintillator A. Allega et al., The SNO+ Collaboration Phys. Rev. D 109, 072002 https://journals.aps.org/prd/abstract/10.1103/PhysRevD.109.072002

  64. Measurement of the 8B Solar Neutrino Flux Using the Full SNO+ Water Phase A. Allega et al. (SNO+ Collaboration) Phys. Rev. D 110, 122003 2024-08-28 10.1103/PhysRevD.110.122003

  65. Initial measurement of reactor antineutrino oscillation at SNO+ A. Allega et al (SNO+ Collaboration) Eur. Phys. J. C 85, 17 (2025) 2024-12-05 https://doi.org/10.1140/epjc/s10052-024-13687-5

  66. Electromagnetic Transition Form Factors of Baryon Resonances G. Ramalho, M.T Peña Prog.Part.Nucl.Phys. 136 (2024) 104097 https://doi.org/10.1016/j.ppnp.2024.104097

  67. Simple high-accuracy method for solving bound-state equations with the Cornell potential in momentum space A. Stadler, E. P. Biernat, and V. Valverde Phys. Rev. D 110, 114039 (2024). 2024-12-31

  68. Electromagnetic |GE/GM| ratios of hyperons at large timelike q2 G. Ramalho, M.T. Peña, K. Tsushima, Myung-Ki Cheoun Phys.Lett.B 858 (2024) 139060 2024-12-31 https://doi.org/10.1016/j.physletb.2024.139060

  69. Natural linewidths of Cu K1,2 spectra obtained with an antiparallel double-crystal x-ray spectrometer Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, Ł. Syrocki, K. Słabkowska, M. Polasik, J. P. Marques, and F. Parente Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, Ł. Syrocki, K. Słabkowska, M. Polasik, J. P. Marques, and F. Parente, “Natural linewidths of Cu K1,2 spectra obtained with an antiparallel double-crystal x-ray spectrometer”. J. Anal. At. Spectrom. 39, 1094 (2024). 2024-02-23 https://doi.org/10.1039/d3ja00367a

  70. Databases of L-shell X-ray intensity ratios for various elements after photon excitation A. Zidi, A. Kahoul, J. P. Marques, S. Daoudi, J. M. Sampaio, F. Parente, A. Hamidani, S. Croft, A. Favalli, Y. Kasri, K. Amari, B. Berkani 7. A. Zidi, A. Kahoul, J. P. Marques, S. Daoudi, J. M. Sampaio, F. Parente, A. Hamidani, S. Croft, A. Favalli, Y. Kasri, K. Amari, B. Berkani, “Databases of L-shell X-ray intensity ratios for various elements after photon excitation”. At. Nucl. Data Tables 157, 101645 (2024) 2024-02-02 https://doi.org/10.1016/j.adt.2024.101645

  71. Semi-Empirical and Theoretical calculation of L1, L2, and L3 Subshell Fluorescence Yields K. Meddouh, A. Kahoul, J. M. Sampaio, S. Daoudi, J. P. Marques, F. Parente, N.Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani K. Meddouh, A. Kahoul, J. M. Sampaio, S. Daoudi, J. P. Marques, F. Parente, N.Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani, “Semi-Empirical and Theoretical calculation of L1, L2, and L3 Subshell Fluorescence Yields”. J.Quant. Sprctr. & Rad. Transf. 322, 109013 (2024). 2024-04-16 https://doi.org/10.1016/j.jqsrt.2024.109013

  72. Measurement of nuclear interaction cross sections towards neutron-skin thickness determination L. Ponnath, T. Aumann, C. A. Bertulani, et al. Phys. Lett. B855, 138780 (2024) 10.1016/j.physletb.2024.138780

  73. Experimental K-shell fluorescence cross sections for elements in the atomic number range 16 ≤ Z ≤ 92 by photon impact at various energies K. Amari, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, B. Berkani. K. Amari, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, B. Berkani. “Experimental K-shell fluorescence cross sections for elements in the atomic number range 16 ≤ Z ≤ 92 by photon impact at various energies”. Atomic Data and Nuclear Data Tables 159, (2024) 101662. 2024-05-22 https://doi.org/10.1016/j.adt.2024.101662

  74. Strong coupling effects on near-barrier 15C + 208Pb elastic scattering V.G. Távora, J.D. Ovejas, I. Martel, et al. Phys. Lett. B 855 (2024) 138770 10.1016/j.physletb.2024.138770

  75. Vacancy transfer probability parameters: database and a new empirical value for elements in the atomic number range 16 ≤ Z ≤ 92 B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. 3. B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. “Vacancy transfer probability parameters: database and a new empirical value for elements in the atomic number range 16 ≤ Z ≤ 92”. Radiation Physics and Chemistry 225, (2024) 112106. 2024-12-04 https://doi.org/10.1016/j.radphyschem.2024.112106

  76. Investigating Empirical and Theoretical Calculations for Intensity Ratios of L-Shell X-ray transitions in atoms with 39 ≤ Z ≤ 94 A. Zidi, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, K. Amari, B. Berkani A. Zidi, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, K. Amari, B. Berkani. «Investigating Empirical and Theoretical Calculations for Intensity Ratios of L-Shell X-ray transitions in atoms with 39 ≤ Z ≤ 94”. Journal of Electron Spectroscopy and Related Phenomena 275, (2024) 147473. 2024-07-10 https://doi.org/10.1016/j.elspec.2024.147473

  77. Empirical calculation of K-shell fluorescence cross sections for elements in the atomic range 16≤Z≤92 by photon effects ranging from 5.46 to 123.6 keV (Three-dimensional formulae) K. Amari, A. Kahoul, J.M. Sampaio, Y. Kasri, J.P. Marques, F. Parente, A. Hamidani, S. Croft, A. Favalli, S. Daoudi, A. Zidi, B. Berkani K. Amari, A. Kahoul, J.M. Sampaio, Y. Kasri, J.P. Marques, F. Parente, A. Hamidani, S. Croft, A. Favalli, S. Daoudi, A. Zidi, B. Berkani, “Empirical calculation of K-shell fluorescence cross sections for elements in the atomic range 16≤Z≤92 by photon effects ranging from 5.46 to 123.6 keV (Three-dimensional formulae)”. Physica Scripta 99, (2024) 105402. 2024-08-21 https://doi.org/10.1088/1402-4896/ad720e

  78. Measurement of differential collisional excitation cross sections for the Kα emission of He-like oxygen Filipe Grilo, Chintan Shah, José Marques, José Paulo Santos, José R. Crespo López-Urrutia, and Pedro Amaro. Filipe Grilo, Chintan Shah, José Marques, José Paulo Santos, José R. Crespo López-Urrutia, and Pedro Amaro.  « Measurement of differential collisional excitation cross sections for the Kα emission of He-like oxygen”. Physical Review A110, 042827(2025). 2024-09-30 10.1103/PhysRevA.110.042827

  79. Relativistic and semi-theoretical calculations of K-shell to L-shell/subshell vacancy transfer probabilities . Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. “Relativistic and semi-theoretical calculations of K-shell to L-shell/subshell vacancy transfer probabilities”. Spectrochimica Acta Part B: Atomic Spectroscopy 224, (2025) 107089. https://doi.org/10.1016/j.sab.2024.107089 2024-11-26 https://doi.org/10.1016/j.sab.2024.107089

  80. Multislit gamma camera for external beam radiotherapy assistance: Experimental proof of concept H Simões, L Lopes, PJBM Rachinhas, P Crespo ARNM 2024, 2(3), 4099 2024-08-23 10.36922/arnm.4099

  81. Final COMPASS results on the transverse-spin-dependent azimuthal asymmetries in the pion-induced Drell-Yan process G.D. Alexeev et al. (COMPASS Coll.) Phys. Rev. Lett. 133, 071902 (2024) 2024-05-14 10.1103/PhysRevLett.133.071902

  82. Jet quenching in anisotropic flowing matter Matvey V. Kuzmin, Xoán Mayo López, Andrey V. Sadofyev Phys.Rev.D 109 (2024) 1, 014036 https://doi.org/10.1103/PhysRevD.109.014036

  83. Jet substructure observables for jet quenching in Quark Gluon Plasma: a Machine Learning driven analysis Miguel Crispim Romão, José Guilherme Milhano, Marco van Leeuwen SciPost Phys. 16, 015 (2024) 2023-12-21

  84. Picturing QCD jets in anisotropic matter: from jet shapes to Energy Energy Correlators João Barata, José Guilherme Milhano, Andrey V. Sadofyev Eur. Phys. J. C (2024) 84:174 10.1140/epjc/s10052-024-12514-1

  85. Von Neumann entropy and Lindblad decoherence in the high energy limit of strong interactions G. Chachamis, A. Sabio Vera 10.1103/PhysRevD.109.054015

  86. Axions and superfluidity in Weyl semimetals Emil Mottola, Andrey V. Sadofyev, Andreas Stergiou Phys.Rev.B 109 (2024) 13, 134512 https://doi.org/10.1103/PhysRevB.109.134512

  87. Exploring the time axis within medium-modified jets Liliana Apolinário, Pablo Guerrero-Rodríguez, Korinna Zapp Eur.Phys.J.C 84 (2024) 7, 672 10.1140/epjc/s10052-024-13048-2

  88. Jet substructure Liliána Apolinário, Yang-Ting Chien, Leticia Cunqueiro Mendez Int.J.Mod.Phys.E 33 (2024) 07, 2430003 10.1142/S0218301324300030

  89. Dynamics of particle-particle correlations and the ridge effect in proton-proton collisions G. Calé, G. Chachamis, A. Sabio Vera https://doi.org/10.1103/PhysRevD.110.074009

  90. Jet quenching in the glasma phase: Medium-induced radiation João Barata, Sigtryggur Hauksson, Xoán Mayo López, Andrey V. Sadofyev Phys.Rev.D 110 (2024) 9, 094055 https://doi.org/10.1103/PhysRevD.110.094055

  91. In-medium gluon radiation spectrum with all-order resummation of multiple scatterings in longitudinally evolving media Carlota Andres, Liliana Apolinário, Fabio Dominguez, Marcos Gonzalez Martinez JHEP 11 (2024) 025 10.1007/JHEP11(2024)025

  92. Multijet event shape variables for Mueller Navelet jet topologies C. Baldenegro, G. Chachamis, M. Kampshoff, M. Klasen, J. G. Milhano, C. Royon, A. Sabio Vera Phys.Rev.D 110 (2024) 11, 114027 2024-11-23 https://doi.org/10.1103/PhysRevD.110.114027

  93. Systematic Study on the Quality of Flux-grown Al2O3 Single Crystals for Dosimetry Applications Rodrigues, C., Saraiva, J. G. M., Gonçalves, A. P., Peralta L SSS160_107835 2024-12-10 10.1016/j.solidstatesciences.2025.107835

  94. Utility of realistic microscopy-based cell models in simulation studies of nanoparticle-enhanced photon radiotherapy Joana Antunes, Catarina I G Pinto, Maria Paula Cabral Campello, Pedro Santos, Filipa Mendes, António Paulo and Jorge M Sampaio Biomedical Physics & Engineering Express 10 (2024): 025015 2024-01-18 10.1088/2057-1976/ad2020

  95. Development of a plastic scintillating optical fibers array dosimeter for radiobiology D.R. Guerreiro ,J.G. Saraiva , M.J. Borges, J.M. Sampaio and L. Peralta J. Inst. 19 P05006 2024-03-25 10.1088/1748-0221/19/05/P05006

  96. A primary simulation study of scintillating fibre dosimetry for a proton minibeam D.R. Guerreiro, B.C. Alves, C. Rodrigues, J.G. Saraiva, L. Peralta, J.M. Sampaio Radiation Physics and Chemistry Volume 224 (2024), 112102 10.1016/j.radphyschem.2024.112102

  97. Novel Bragg peak characterization method using proton flux measurements on plastic scintillators D R Guerreiro, J G Saraiva, L Peralta, C Rodrigues, M Rovituso, E van der Wal, Dennis R Schaart, P Crespo, H Simões and J M Sampaio Phys. Med. Biol. 69 (2024) 225005 https://doi.org/10.1088/1361-6560/ad8da0

  98. Developing competencies through flow, gamification and cultural integration: an analysis of the potential of games in teaching/learning L. Lopes, S. Schreurs, C. Licour, S. Soares Radiat. Eff. Defects Solids 179 (2024) 3-13 2024-01-02 10.1080/10420150.2024.2318700

  99. Thickness and Uniformity of Commercial Aluminum Foils L. Peralta, A. I. Campos and M. S. Rodrigues Journal of Materials Engineering and Performance 2024-12-22 https://doi.org/10.1007/s11665-025-10722-8

  100. New readout scheme for large area timing & position RPCs Joao Saraiva, Alberto Blanco Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1068 (2024) 169803 2024-11-01 10.1016/j.nima.2024.169803

  101. SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Collaboration (202 authors) JINST 19 (2024) P05067 2024-05-23 10.1088/1748-0221/19/05/P05067

  102. Results and Perspectives from the First Two Years of Neutrino Physics at the LHC by the SND@LHC Experiment SND@LHC Collaboration Symmetry 16 (2024) 6, 702 2024-06-06

  103. Observation of collider neutrinos without final state muons with the SND@LHC experiment SND@LHC Collaboration CERN-EP-2024-316 2024-11-25

  104. Differentiable Vertex Fitting for Jet Flavour Tagging Rachel E. C. Smith, Inês Ochoa, Rúben Inácio, Jonathan Shoemaker, Michael Kagan PHYSICAL REVIEW D 110, 052010 (2024) 10.1103/PhysRevD.110.052010

  105. Spatial Analysis of Determinants of COVID-19 Vaccine Hesitancy in Portugal Constança Pinto de Carvalho, Manuel Ribeiro, Diogo Godinho Simões, Patrícia Pita Ferreira, Leonardo Azevedo, Joana Gonçalves-Sá, Sara Mesquita, Licínio Gonçalves, Pedro Pinto Leite, André Peralta-Santos Vaccines 2024, 12(2), 119 10.3390/vaccines12020119

  106. Correction to: Fundamental parameters for 45 open clusters with Gaia DR2, an improved extinction correction and a metallicity gradient prior H Monteiro, W S Dias, A Moitinho, T Cantat-Gaudin, J R D Lépine, G Carraro, E Paunzen Monthly Notices of the Royal Astronomical Society, Volume 528, Issue 4, March 2024, Page 6129 https://doi.org/10.1093/mnras/stae363

  107. Gaia Focused Product Release: A catalogue of sources around quasars to search for strongly lensed quasars Andre Moitinho et al. 2023-10-09 https://doi.org/10.1051/0004-6361/202347273

  108. Discovery of a dormant 33 solar-mass black hole in pre-release Gaia astrometry Andre Moitinho et al. A&A, 686, L2 (2024) 2024-03-30 https://doi.org/10.1051/0004-6361/202449763

  109. Programmable Optical Synaptic Linking of Neuromorphic Photonic-Electronic RTD Spiking Circuits Matěj Hejda, Weikang Zhang, Qusay Raghib Ali Al-Taai, Ekaterina Malysheva, Dafydd Owen-Newns, José M. L. Figueiredo, Bruno Romeira, Joshua Robertson, Victor Dolores-Calzadilla, Edward Wasige, Antonio Hurtado ACS Photonics 2024, 11, 4279−4287 2024-09-18 https://doi.org/10.1021/acsphotonics.4c01199

  110. ELEPHANT: ExtragaLactic alErt Pipeline for Hostless AstroNomical Transients A. Moitinho et al. 2024-09-09 https://doi.org/10.1051/0004-6361/202450535

  111. Photonic-electronic spiking neuron with multi-modal and multiwavelength excitatory and inhibitory operation for high-speed neuromorphic sensing and computing Weikang Zhang, Matěj Hejda, Qusay Raghib Ali Al-Taai, Dafydd Owen-Newns , Bruno Romeira , José M. L. Figueiredo , Joshua Robertson, Edward Wasige, Antonio Hurtado Neuromorph. Comput. Eng. 4 044006 2024-11-01 DOI 10.1088/2634-4386/ad8df8

  112. Spiking flip-flop memory in Resonant Tunnelling Diode neurons Giovanni Donati, Dafydd Owen-Newns, Joshua Robertson, Ekaterina Malysheva, Andrew Adair, José Figueiredo, Bruno Romeira, Victor Dolores-Calzadilla, Antonio Hurtado PHYSICAL REVIEW LETTERS 133, 267301 (2024) 2024-11-18 10.1103/PhysRevLett.133.267301

  113. A Large Jet Narrow-line Seyfert 1 Galaxy: Observations from Parsec to 100 kpc Scales Sina Chen, Preeti Kharb, Silpa Sasikumar, Sumana Nandi, Marco Berton, Emilia Järvelä, Ari Laor, Ehud Behar, Luigi Foschini, Amelia Vietri, Minfeng Gu, Giovanni La Mura, Luca Crepaldi, and Minhua Zhou Astrophysical Journal, Volume 963, Number 1 10.3847/1538-4357/ad182a

  114. Potential of water-Cherenkov air shower arrays for detecting transient sources of high-energy astrophysical neutrinos J. Alvarez-Muñiz, R. Conceição, P. J. Costa, B. S. González, M. Pimenta, and B. Tomé Phys. Rev. D 110, 023032 2024-06-13 10.1103/PhysRevD.110.023032

  115. High resolution gamma/hadron and composition discriminant variable for water-Cherenkov detector cosmic-ray observatories Ruben Conceição, Pedro J. Costa, Lucio Gibilisco, Mário Pimenta and Bernardo Tomé Phys. Rev. D 110, 023033 2024-06-24 https://doi.org/10.1103/PhysRevD.110.023033

  116. Oliveira, F.S.B.F., A.B. Fortunato, P. Freire (2024). Beach Nourishment Protection against Storms for Contrasting Backshore Typologies, Journal of Marine Science and Engineering, 12/9: 1465.

  117. Muralha, A.; Melo, J.F.; Ramos, H.M. Validation of Computational Methods for Free-Water Jet Diffusion and Pressure Dynamics in a Plunge Pool. Appl. Sci. 2025, 15, 1963. https://doi.org/10.3390/app15041963

  118. Muralha, A.; Melo, J.F.; Ramos, H.M. Numerical simulation of a plunging jet. Performance comparison between volume-of fluid and two-phase Euler solvers, Proceedings of the 8th IAHR Europe Congress "Water across boundaries", Lisboa, Portugal, 4 - 7 junho.

  119. Garzon, J.L.; Ferreira, Ó.; Plomaritis, T.A.; A.C. Zózimo, A.C.; Fortes, C.J.E.M.; Pinheiro, L.V. (2024). "Development of a Bayesian network-based early warning system for storm-driven coastal erosion", in Coastal Engineering, Vol. 189 (2024), 104460, ISSN 0378-3839, https://doi.org/10.1016/j.coastaleng.2024.104460

  120. Pinheiro, L.V.; Zózimo, A.C.; Fortes, C.J.E.M. (2024). "New developments in the Praia da Vitória Coastal Bay and Harbor Early Warning System", in Coastal and Offshore Science and Engineering, Year II - Vol.4 - 2023, pp. 6-18, DOI: 10.53256/COSE_230201.

Oral Presentations

  1. LFcin Refinery: A machine learning approach to improve antimicrobial peptides’ efficacy against nontuberculous mycobacteria Gabriel S. Oliveira, Maria Salomé Gomes, Sérgio F. Sousa, Tânia Silva - IMAP 2024 11th International Meeting on Antimicrobial Peptides 2024/09/02-04 (London, United Kingdom) 1- Tackling biofilm formation using an in silico approach Tatiana F. Vieira - LAQV Webinar 2024/04/17 (Porto, Portugal) (online)
  2. Exploring pH-dependent Dynamics Of Doxorubicin Delivery Using Functionalized Multi-walled Carbon Nanotubes: Insights From Molecular Dynamics Simulations Fábio G. Martins, Sérgio F. Sousa – Biophysics Festival - 4th Meeting of Young Biophysics 9-10.05.2024 (Covilhã, Portugal)
  3. Development of a Computational Protocol for the Rational Design of Nanomedicines Aimed at Cardiovascular Diseases Fábio G. Martins, Sérgio F. Sousa – XXII National Congress of Biochemistry 24-26.10.2024 (Aveiro, Portugal)
  4. Use of HPC Computing for Accelerating Drug Discovery Targeting the SARS-CoV-2 S-RDB/ACE2 Interaction Fábio G. Martins, Sérgio F. Sousa IBERGRID 2024 – 28-30.10.2024 (Porto, Portugal)
  5. A Computational Strategy for the Design of Targeted Nanomedicines in Cardiovascular Diseases Fábio G. Martins, Sérgio F. Sousa – XXVIII Encontro Galego-Português de Química 13-15.11.2024 (Vigo, Spain)
  6. Molecular Insights into HIV-1 Integration: A Computational Study of Intasome-Nucleosome Interactions Fábio G. Martins, Sérgio F. Sousa – LAQV WEBINAR 21.05.2025 (Online)
  7. Development and Application of a Multi-Level Computational and In Vitro Approach for Identifying MAPK3 Inhibitors in Leishmania martiniquensis and Leishmania orientalis – Duangnapa Kiriwan, Tatiana F. Vieira, Nutnaree Kumsiri, Kiattawee Choowongkomon, Sergio F. Sousa - BIOPHYSICS FESTIVAL – 4 th Meeting of Young Biophysicists - 9-10.05.2024
  8. Tripeptide-Based Inhibition of EGFR Tyrosine Kinase in Lung Cancer: Findings from Computational and Experimental Studies - Duangnapa Kiriwan, Supaphorn Seetaha, Nattanan Jiwacharoenchai, Lueacha Tabtimmai, Napat Songtawee, Kiattawee Choowongkomon, Sérgio F. Sousa - XXII SPB National Congress of Biochemistry - 24- 26.10.2024
  9. From plants to anti-snakebite mechanisms. Airam Roggero, Isabelly Annunciato, Fabio G. Martins, Igor Nicodemo, Marcos H.Toyama, Sergio F. Sousa. 6th Meeting on Medicinal Biotechnology 2024
  10. Effects of Morin on Cell Membrane Fluidity: An Analysis of the Anti-inflammatory Efficacy of Flavonoids. Airam Roggero, Caroline Ramos da Cruz, Marcos H. Toyama, Sergio F. Sousa. - XXIX National Meeting of the Portuguese Chemical Society, Coimbra, Portugal, 2025.
  11. Enzyme Modulation and Inflammation: A New Therapeutic Target. Airam Roggero, Marcos H. Toyama, Sergio F. Sousa - 7th Symposium on Medicinal Chemistry of University of Minho, Braga, Portugal, 2025.
  12. Aspartame and Inflammation: An In Silico Evaluation of Interference in the Land’s Cycle and Cell Membrane Integrity. Isabelly Annunciato; Michelle Rafael; Igor Nicodemo; Airam Roggero; Caroline R. da Cruz; Mariana N. Belchor; Adeilso B. S. Junior; Gustavo A. Fernandes; Marcos A. de Oliveira; Sérgio F. Sousa; Marcos Hikari Toyama – XXVII Encontro Luso Galego de Química 22/11/2023 to 24/11/ 2023 (Porto, Portugal)
  13. Use of HPC Resources to Find New Drugs Against Biofilm Formation Tatiana F. Vieira, Sérgio F. Sousa - IBERGRID 2024 2024/10/28-30 (Porto, Portugal)
  14. Engineering aptamers for Biomedical Application using Biomolecular Simulations Sérgio F. Sousa - 26th Congress of the International Union of Biochemistry and Molecular Biology (IUBMB) 2024/09/25 (Melbourne, Australia)
  15. Development of Computational Methods For Aptamer Engineering For Targeted-Drug Delivery Sérgio F. Sousa - XXVIII EFMC International Symposium on Medicinal Chemistry 2024/09/03 (Rome, Italy) (Flash talk/poster)
  16. Application of QM/MM Methods in Enzyme Bioengineering Efforts: Understanding PET Degrading Activity of PETases Sérgio F. Sousa - XLVII International Congress of Theoretical Chemists of Latin Expression (Chitel2024) 2024/07/03 (Namur, Belgium)
  17. Application of QM/MM Methods in the Study of the Enzyme Efficiency by PET Degrading Enzymes Sérgio F. Sousa - ESPA2024 Meeting (Electronic Structure Principles and Applications Conference) 2024/06/06 (Tarragona, Spain)
  18. Probing the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET Degrading Enzymes by QM/MM Methods Sérgio F. Sousa - International Society of Quantum Biology and Pharmacology (ISQBP) 2024 President’s Meeting 2024/05/21 (Athens, Greece)
  19. Towards One Health: Combining Biomolecular Simulations, Artificial Intelligence and Scientific Databases Sérgio F. Sousa - 1-day Course for the PhD Program in Integrated Health (One Health) at FMUP (Invited Lecture) 2024/11/15 – (Porto, Portugal)
  20. Development of Multi-Level Biomolecular Simulation Protocols for Aptamer Engineering for Biomedical Applications Sérgio F. Sousa - 13th Iberian Grid Conference – IBERGRID 2024 (Plenary Lecture) 2024/10/30 – (Porto, Portugal)
  21. Application of QM/MM Methods in Enzyme Bioengineering Efforts: Understanding PET Degrading Activity of PETases Sérgio F. Sousa - International Symposium on Future in Enzyme Modeling (FEM2024) (Invited lecture) 2024/10/25 – (Tianjin, China)
  22. Combining Biomolecular Simulations with Medicinal Chemistry: Expanding Horizons Sérgio F. Sousa - Global Health Horizons: Empowering Pharmacists Through Research and Development Conference - World Pharmacists Day 2024 - Indira Gandhi National Tribal University (Plenary Lecture) 2024/09/24 – (Amarkantak, Madhya Pradesh, India) (online)
  23. Combining Different In Silico Methods for Drug Design and Development: Challenges and Opportunities Sérgio F. Sousa - Virus-Host-AI Meeting (Invited Lecture) 2024/07/29 – (Figueira da Foz, Portugal)
  24. Multiscale Modelling of DNA/RNA Aptamers for Molecular Recognition Sérgio F. Sousa - XLVIII International Congress of Theoretical Chemists of Latin Expression (Chitel2025) 2025/07/17 (Cartagena-das-Indias, Colombia)
  25. Exploring the interaction between nitrosamines with PAF-AH enzyme: in silico prospection for new therapeutic strategies Isabelly Annunciato - International Conference on Integrative Bioinformatics and Computer Systems Biology (ICIBCSB - 23) - 05/10/2023 - (Milan, Italy)
  26. Understanding the mechanism of action of multi-target anti-diabetic natural compounds using Virtual Screening Carlos S. H. Shiraishi; Fábio G. Martins, Sérgio F. Sousa, Miguel A. Prieto, Sandrina A. Heleno and Rui M. V. Abreu. Academy Branch of the Conference,4th Insure Hub Conference “Innovation, Sustainability and Regeneration, October 29-30, 2024, in Porto.
  27. Madeira C (presenter), Lohmann D, Kirner A, Gaspar J, Bornhäuser J, Martins C, D’Ambrosio M, António C, Maricato R, Araújo E, Rodrigues AM, Costa PM, Diniz MS (2025). Climate change in the Eastern Tropical Pacific: Adaptive responses of the commercial fish spotted rose snapper – Implications for Conservation. Global Coral Reef Monitoring Network Meeting – Eastern Tropical Pacific Node, 15-04-2025, online.
  28. Madeira C (presenter), Missionário M, Cabral IM, Fernandes JF, António C, Rodrigues AM, D’Ambrosio M, Menconça V, Grosso AR, Costa PM, Madeira D (2024). Iberian goby populations from colder sites display low phenotypic variation despite high molecular plasticity in response to heat. SEB Society for Experimental Biology Congress, 2nd-5th July, Prague, Czech Republic.
  29. Madeira C, Costa PM (2024) Marine molecular networks for a healthy ocean and a sustainable blue economy. Scientific Conference Series, Institute Maurice Lamontagne – Department of Fisheries and Oceans Canada, 16-05-2024, Mont-Joli, Québec, Canada. Invited by Dr. Kathleen McGregor.
  30. Madeira C, António C, Rodrigues AM, Lohmann D, Martins C, Kirner A, Bornhäuser J, Gaspar J, D’Ambrosio M, Estcourt T, Schwerdt S, von Hammerstein H, Vince J, Calvo-Elizondo E, Esquivel E, Chacon-Guzman J, Diaz-Pulido G, Doo S, Clarke T, di Falco C, Bejarano S, Costa PM, Diniz MS (2024) Tropical fish on the move: climate change impacts in species physiology and potential biodiversity redistributions. University of Québec at Rimouski, 08-05-2024, Rimouski, Québec, Canada. Invited by Prof. Piero Calosi.
  31. Madeira C, Costa PM, Madeira D, Vinagre C (2024) From molecules to ecosystems: thermal biology of marine fish, Reef Systems WG Workshop EU-Colombia, Leibniz Centre for Tropical Marine Research, 25-01-2024, Bremen, Germany. Invited by Dr. Sonia Bejarano.
  32. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Multilayer networks in benthic fish responses to environmental stressors in intertidal environments, AG Voolstra Lab Networking Seminar, Department of Biology, Universität Konstanz, 18-01-2024, Konstanz, Germany. Invited by Prof. Christian Voolstra.
  33. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Molecular networks in small benthic fish adaptation to labile environments, Institute of Evolution and Ecology Seminars, Faculty of Science, University of Tübingen, 17-01-2024, Tübingen, Germany. Invited by Prof. Nico Michiels.
  34. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Stress response mechanisms of small benthic fish in fluctuating environments, Institute of Marine Ecosystem and Fishery Science Seminars, Universität Hamburg, Faculty of Mathematics, Informatics and Natural Science, 15-01-2024, Hamburg, Germany. Invited by Prof. Flemming Dahlke.
  35. Missionário M (presenter), Madeira D, Vinagre C, Costa PM, Madeira C (2022). Marine shallow waters as climate change hotspots – multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. BioSeminars@UCIBIO. UCIBIO-NOVA & UCIBIO-Porto, 21-12-2022, Online.
  36. Cabral IM (presenter), Costa PM, Grosso AR, Madeira C (2023) A transcriptomic approach to unravel molecular mechanisms contributing to heat acclimatization of a non-conventional model marine organism. InSilicoClub@UCIBIO, UCIBIO-NOVA & UCIBIO-Porto, 26-03-2023, Online.
  37. E. Faustino, S.L. Mendes, J. Carvalho, C. Sousa-Santos; V.C. Sousa. Hybridization between currently allopatric species at the root of speciation? The case of Iberian chubs (Genus Squalius) XX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology in BIOPOLIS – CIBIO, Research Centre in Biodiversity and Genetic Resources, Vila do Conde, Portugal. 19-20 December 2024.
  38. A. Blanckaert, V.C. Sousa. Interactions between mechanisms of reproductive isolation, 3rd Joint Congress of Evolutionary Biology, Montreal, Canada. 30th July 2024.
  39. S.L. Mendes, E. Faustino, C. Bernardo, S. Perea, I. Doadrio, C. Sousa-Santos, P.G. Feulner, V.C. Sousa. “Hybridization is prevalent but outcomes are distinct across Iberian chubs”. 3rd Joint Congress on Evolutionary Biology. Montreal, Canada. 30th July 2024
  40. "The octocoral microbiome: exploring pathogens, probiotics and climate change impacts" at Biological Sciences Research Group, Instituto Superior Técnico, University of Lisbon, Portugal
  41. Institute Seminar entitled "Designing probiotics to promote octocoral health under climate change" at Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Portugal
  42. Martins,R; Fortunato, A B; Oliveira, A, Jesus, G; Mani, S; Meyers, E; Moghimi, S (2024). OPENMeshS: an online, open, unstructured mesh generator for OPENCoastS, 8th IAHR Congress Full papers, 177-182. DOI: 10.34638/3zcb-9082
  43. Fortunato, A B; Freire, P; Ana, R; Viseu, T; Rodrigues, M (2024). Mapping inundation of estuarine margins driven by ocean and fluvial forcings, 8th IAHR Congress Full papers, 229-235. DOI: 10.34638/3zcb-9082
  44. Rodrigues, M; Fortunato, A B; Martins, R J; Jesus, G; Brito, A C; Oliveira, A; Nahon, A; Costa, J L.; Alves, E; Korani, Z M; Azevedo, A (2024). CONNECT – Local coastal monitoring service for Portugal, 8th IAHR Congress Full papers, 237-246. DOI: 10.34638/3zcb-9082
  45. SASSETTI MENDES, L.; MURALHA, A.; MELO, J.F.; VISEU, T. (2024). Why Computational Fluid Dynamics is Mandatory in Physical Modelling Of Large Hydraulic Structures: A Six-Step Methodology Of Integration. 8th IAHR Europe Congress. LNEC, Lisboa, 4 a 7 de Junho de 2024.
  46. SASSETTI MENDES, L., ALVES, E. (2024). Volume-Of-Fluid vs Euler-Euler - CFD Of Pisão Dam’s Stilling Basin. 6th Foam@Iberia. Ferrol, Espanha. 3 a 4 de outubro de 2024.

Proceeding in international conferences

  1. Arias, D., Gadelho, J. and Guedes Soares, C., 2024. Numerical simulations evaluating the influence of different geometric features in the pneumatic efficiency of OWC devices. In Innovations in Renewable Energies Offshore (pp. 249-256). CRC Press. DOI: 10.1201/9781003558859-28
  2. Li, H.S., Wang, S. and Guedes Soares, C., 2024. Uncertainty assessment of the scale effects on a submerged cylinder. In Advances in Maritime Technology and Engineering (pp. 139-148). CRC Press. DOI: 10.1201/9781003508779-15
  3. Fortes, C.J.E.M.; Pinheiro, L.V.; Zózimo, A.C.; Lima, L.; Serrazina, V. (2024). "HIDRALERTA: Emergency Response Module for Coastal Wave Overtopping and Flooding at Praia da Vitória bay", in proceedings of the 8th IAHR Congress, LNEC, Lisbon, 4-7 June, 2p.
  4. Garzon, J.L.; Ferreira, Ó.; Zózimo, A.C.; Fortes, C.J.E.M.; Pinheiro, L.V., (2024). "Development of an efficient early warning system for wave-induced flooding", 38th ICCE, Rome, 8-14 September, 2p, comunicação feita, a aguardar publicação das atas (versão digital obtida através da Conftool do congresso).
  5. Zózimo, A.C.; Pinheiro, L.V.; Chenneveau, L.; Manz, A.; Garzon, J.L.; Fortes, C. (2024). "Deep learning framework to use complex models in operational forecast systems", 38th ICCE, Rome, 8-14 September, 2p, comunicação feita, a aguardar publicação das atas (versão digital obtida através da Conftool do congresso).

Posters (internation meetings)

  1. Galamba, N. Cyclic Peptides as Protein Aggregation Inhibitors for Globular and Intrinsically Disordered Disease-Related Proteins, The Leuven Protein Aggregation Meeting (2nd edition), September 11-13, 2024, Leuven, Belgium – poster
  2. Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Gonçalves Carvalho Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "Molecular Modeling in Biotechnology: Design and Discovery of small molecule adsorbents". Trabalho apresentado em EuroQSAR 2024, 2024.
  3. Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "In silico Affinity Ligands: Design and Discovery of small molecule adsorbents". Trabalho apresentado em Bpi Europe 2024, 2024.
  4. Moura Barbosa, Arménio J.; Soares, Cátia Lopes; Esteves, Carina; Nurrito, Ariana; Lychko, Iana; Ana Margarida Dias; Pina, Ana Sofia; Roque, Ana Cecília Afonso. "From code to structure: molecular modeling in biomaterials assembly". Trabalho apresentado em SUPRAlife Second School – “Bioinspired Supramolecular Self-Assemblies, 2024.
  5. Using QSAR models to refine antimicrobial peptides against Mycobacterium abscessus Gabriel S. Oliveira, Maria Salomé Gomes, Sérgio F. Sousa, Tânia Silva - ESCMID Global 2025 2025/04/11-15 (Wien, Austria)
  6. Metodologia in silico para identificação de novos compostos para inibição da formação de biofilme em P. aeruginosa Tatiana F. Vieira, Manuel Simões, Nuno M. F. S. A. Cerqueira, Sérgio F. Sousa – Ciência 2024: Encontro com a Ciência e Tecnologia em Portugal, Porto 2024/07/3-5 (Porto, Portugal)
  7. Molecular Dynamics Simulations of Lysinated Multiwalled Carbon Nanotubes for Enhanced Delivery of Doxorubicin in Cancer Therapy Fábio G. Martins; Sérgio F. Sousa – 6th Meeting on Medicinal Biotechnology 17.05.2024 (Porto, Portugal)
  8. Optimizing Doxorubicin Delivery in Cancer Treatment with Lysinated Multiwalled Carbon Nanotubes: A Molecular Dynamics Study Fábio G. Martins, Sérgio F. Sousa – Encontro Ciência 2024 03.07.2024 (Porto, Portugal)
  9. Modeling HIV-1 Intasome-Nucleosome Interactions: A Molecular Perspective Fábio G. Martins, Sérgio F. Sousa – 7th Meeting on Medicinal Biotechnology 30.05.2025 (Porto, Portugal)
  10. Multi-level Computational and In Vitro Approach for Identifying MAPK3 Inhibitors in Leishmania martiniquensis and Leishmania orientalis (E-poster) - Duangnapa Kiriwan, Tatiana F. Vieira, Nutnaree Kumsiri, Kiattawee Choowongkomon, Sergio F. Sousa – Portuguese Science Summit 2024 – 03-05.07.2024
  11. Computational Identification of Dual Protein Targets for Anti-leishmanial Drug Development - Duangnapa Kiriwan, Sergio F. Sousa – 7th Meeting on Medicinal Biotechnology - 30.05.2025 (Porto, Portugal)
  12. Creation of a 3D-Molecular Database of Voltage-Gate Sodium Channels - João Boazinha, João Carneiro, Nuno M.F.S.A Cerqueira, Sérgio F. Sousa - 6th Meeting on Medicinal Biotechnology 2024/05/17 (Porto, Portugal)
  13. Development of a 3D-Molecular Database of Voltage-Gate Sodium Channels (E-Poster) - João Boazinha, João Carneiro, Nuno M.F.S.A Cerqueira, Sérgio F. Sousa - Encontro Ciência 2024 2024/07/03 to 2024/07/05 (Porto, Portugal)
  14. Influence of Nonsteroidal Anti-inflammatory Drugs on Membrane Repair. Airam Roggero, Igor Nicodemo, Fabio G. Martins, Marcos H. Toyama, Sergio F. Sousa.. Encontro Ciência 2024. Porto, Portugal 2024.
  15. Impact of NSAIDs on the Enzymatic Alteration of the Lands Cycle and Their Long-Term Hepatic Effects - Aiam Roggero, Fabio G. Martins, Marcos H. Toyama, Sergio F. Sousa..3ª edição do Congresso de Ciências. Faculdade de Ciências da Universidade do Porto, Porto, Portugal 2024.
  16. From Sustainability Until Green Engineering A Puzzle to Classes - Airam Roggero; Pedro H. S. Fernandes; Marcos H.Toyama; Sergio F. Sousa.. XXII National Congress of Biochemistry. University of Aveiro, Aveiro, Portugal 2024.
  17. Exploring The Sites of Interaction Of Non-Steroidal Antiinflammatory Drugs With Enzymes In The Landis Cycle. Biophysics Festival - Airam Roggero, Isabelly Annunciato, Igor Nicodemo, Fabio G. Martins, Marcos Hikari Toyama, Sergio F. Sousa. – 4th Meeting of Young Biophysicists. Faculty of Sciences of University of Beira Interior, Covilhã, Portugal
  18. NSAIDs from antiinflammatory to PAF AH potential inhibitor, far beyond inhibition of COX to potential anti- tumor agent - Roggero , I. Annunciato, I. Nicodemo, C.R. Costa, G.A. Fernandes, A.B. Junior, M. Rafae, M.A. de Oliveira, S.F. Sousa, M.H. Toyama..48th FEBS Congress, Milan, Italy, 2024.
  19. Gallic Acid as a Supportive Agent in the Immunotherapy of Cancer. Airam Roggero, Caroline Ramos da Cruz, Igor Nicodemo, Pedro Loyola, Marcos H. Toyama, Sergio F. Sousa. - 7th Meeting on Medicinal Biotechnology & 3rd Iberian Congress on Medicinal Biotechnology. Escola Superior de Saúde, Porto, Portugal, 2025.
  20. Lands cycle is a new therapeutic target for antitumor drugs. Airam Roggero, Igor Nicodemo, Pedro Loyola, Carol R. Cruz, Marcos H. Toyama, Sergio F. Sousa - Encontro Ciência 2025. Lisboa, Portugal, 2025.
  21. Activating Factor Regulation: A Computational Prospection for Therapeutic Insights - . Annunciato, I. ; Toyama, Marcos Hikari ; Santos Junior, A. B. ; Roggero, A. ; Cruz. C, R, C. ; Sousa, S. F. ; Oliveira, M. A. ; Rafael, M. ; Nicodemo, I. ; Fernandes, Gustavo Antônio . Exploring Nitrosamines' Impact on Patelet. - Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024, Águas de Lindóia. 53rd Annual Meeting of the Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024.
  22. NSAIDs from anti-inflammatory to PAF AH potential inhibitor, far beyond inhibition of COX to potential anti- tumor agent. Roggero, A., Annunciato, I., Nicodemo, I., Costa, C.R.C., Junior, A.B.S., Rafael, M., Oliveira, M.A., Souza, S.F., Toyama M.H.1, Toyama, M.Η.. Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024, Águas de Lindóia. 53rd Annual Meeting of the Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024.
  23. Development of Combined Multi-scaled In Silico Tools For Aptamer Design Sérgio F. Sousa - 15th European Biophysics Congress (EBSA2025) 2025/07/03 (Rome, Italy)
  24. Computational Chemistry Driven Development of DNA/RNA Aptamers Sérgio F. Sousa - 49th FEBS Congress (FEBS2025) 2025/07/06 (Istanbul, Turkey)
  25. Innovative method to identify plants with antidiabetic ingredients using high performance computing Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. International Conference on Sutainable Foods - Achieving the Sustainable Development Goals (ICSF), School of Technology and Management (ESTiG) of the Polytechnic Institute of Bragança on July 24th and 25th of 2024.
  26. Triagem Virtual de Potenciais Inibidores Naturais Antidiabético do Cotransportador de Glicose de Sódio Tipo 2 (SGLT2) Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. IPO Porto Summit held on May 9-11, 2024 at the Portuguese Oncology Institute of Porto.
  27. Identification of dual-target antidiabetic mushrooms natural compounds using virtual screening Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. 2nd Conference of the Doctoral Program in Metabolism – Clinical and Experimental, within the topic of “METAINFLAMMATION: A HOT TOPIC IN METABOLIC DYSFUNCTION”, held at the Faculty of Medicine of the University of Porto, Portugal on the 25th of October 2024.
  28. An In silico prospection for new therapeutic strategies: the impact of nitrosamines in PAF regulation Isabelly Annunciato; Igor Nicodemo; Michelle Rafael; Airam Roggero; Caroline C. Ramos; Mariana N. Belchor; Adeilso B. S. Júnior; Gustavo A. Fernandes; Marcos A. Oliveira; Sérgio F. Sousa; Marcos H. Toyama – 3D-Bioinfo-PT Annual Meeting – Faculdade de Ciências e Tecnologia da Universidade de Coimbra – 18.12.2023
  29. C5 Genetic Variants Affect the Stability of the C5-Eculizumab Complex Vanda P. Peixoto, Cristina Prudêncio, Mónica Vieira, Sérgio F. Sousa – 7th Meeting on Medicinal Biotechnology & 3rd Iberian Congress on Medicinal Biotechnology 30.05.2025 (Porto, Portugal)
  30. KDM4C epigenetic therapy for triple-negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - Encontro Ciência 2024 - Science and Technology Summit 2024/07/3-5 (Porto, Portugal)
  31. Design of new epigenetic inhibitors for the treatment of triple negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - 6th Meeting of Medicinal Biotechnology 2024/05/17 (Porto, Portugal)
  32. Therapeutic epigenetic KDM4C remodeling for the treatment of triple negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - 30th Porto Cancer Meeting 2024/05/9-10 (Porto, Portugal)
  33. Ferri, A., Moutinho Cabral, I., Sabia, C., Iseppi, R., Costa, P.M., Simonini, R. (2024) "Unveiling the biotechnological potential of marine polychaete Halla parthenopeia: Insights into hallachrome antimicrobial properties and toxin identification". 57th European Marine Biology Symposium.
  34. Madeira, C., António, C., Rodrigues, A.M., Lohmann, D., Martins, C.A., Kirner, A., Bornhäuser J., et al. (2024) "Marine molecular networks underpinning stress tolerance to warming and acidification in the spotted rose snapper Lutjanus guttatus from the Eastern Tropical Pacific". Society for Experimental Biology Congress.
  35. Madeira C, António C, Rodrigues AM, Lohmann D, Martins C, Kirner A, Bornhäuser J, Estcourt T, Schwerdt S, von Hammerstein H, Vince J, Calvo E, Esquivel E, Chacon-Guzman J, Diaz-Pulido G, Doo S, Diniz MS, Costa PM, Bejarano S (2024) Marine molecular networks underpinning stress tolerance to warming and acidification in the spotted rose snapper Lutjanus guttatus from the Eastern Tropical Pacific. Society for Experimental Biology (SEB) Congress, 2nd-5th July, Prague, Czech Republic.

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex Student: André Pina (Supervisor Principal: Nuno Cerqueira; Co-Supervisor: Sérgio Sousa) Doutoramento: Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal Janeiro de 2024

  1. Development of biocidal formulations for effective biofouling control Student: Susana Maria da Fonseca Fernandes (Supervisor Principal: Manuel Simões; Outros Supervisores: Sérgio Sousa e Fernanda Borges ) Doutoramento: Programa Doutoral em Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal Fevereiro de 2024
  2. Paroxysmal Nocturnal Hemoglobinuria: Unraveling Epidemiological Patterns, Molecular Mechanisms, And Biotechnological Advances Student: Vanda Patrícia Pinto Peixoto (Supervisor Principal: Mónica Vieira, ESS; Co-supervisor: Sérgio F. Sousa) Doutoramento: PhD Program in Advanced Biotechnology (PhD) Universidade de Vigo, Spain Junho 2024
  3. New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach Student: Cláudia Tatiana Vieira (Supervisor Principal: Sérgio F. Sousa; Outros Supervisores: Manuel Simões e Sérgio F. Sousa ) Doutoramento: Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal Julho de 2024

Ongoing

  1. Sofia Mendes, Biology PhD programme, Host: CE3C-Ciências (12.2019-07.2025) Co-supervisors: Dr. Carla Sousa-Santos (ISPA), Dr. Philine Feulner (EAWAG). Thesis: The role of hybridization in speciation and adaptation: insights from Iberian freshwater fish species. Funding: FCT scholarship SFRH/BD/145153/2019 to SM.
  2. João Carvalho, BIODIV PhD programme, Host: CE3C-Ciências (03.2018-02.2024) Co-supervisors: Prof. Roger Butlin (Sheffield U.), Dr. Rui Faria (CIBIO, U. Porto). Thesis: Genomics of ecotype formation: interplay between demographic processes and natural selection. Funding: FCT scholarship PD/BD/128350/2017 to JC.
  3. Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OPENFOAM, Jorge Filipe Marques Gadelho, Instituto Superior Técnico, 14/03/2025
  4. Matilde MArques, "Insights into the octocoral microbiome in health and disease: from climate change impacts to probiotic prospects" at Instituto Superior Técnico, University of Lisbon, Portugal
  5. Study by simulation and reconstruction of a brain-dedicated positron emission tomograph based on resistive plate chambers Ana Luísa Lopes UC
  6. Quarkonium production studies at LHC energies: towards the understanding of bound-state formation by the strong force Mariana Araújo IST
  7. Tomografia de Muões com RPCs na Mina do Lousal Pedro Teixeira UÉvora
  8. Study of the Spin/CP properties of the Higgs coupling to W-bosons with ATLAS at the LHC Ricardo Barrué IST
  9. Using online behaviour to track global outbreaks and pandemics Sara Mesquita UNL-NOVA
  10. Searching for dark matter with the ATLAS detector using unconventional signatures Maura Teixeira UMinho
  11. Modeling the radiobiological effects of gold nanoparticles in proton therapy of glioblastomas Joana Antunes FCUL
  12. Evaluating the Effectiveness of Mini-Beam Radiation in Cancer Therapy Miguel Molina-Hernández IST
  13. Bragg Peak monitoring through prompt-gamma: detection and instrumentation José Patuleia Venâncio IST
  14. Search for new physics in exclusive processes at the Large Hadron Collider Matteo Pisano IST
  15. A next-generation gamma-ray observatory powered by Machine Learning techniques Borja González IST
  16. Pentaquark spectroscopy for the LHC Raúl Torres IST
  17. Phase-II Tracking in ATLAS and search for ttHH production using Run-2 and Run-3 LHC Data Luis Coelho UC
  18. The substructure of in-medium jets João Martins da Silva IST
  19. Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira IST
  20. Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado IST
  21. Raios Cósmicos: desenvolvimento de módulos de divulgação através de design participativo Luís Afonso UP
  22. Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes IST
  23. Study of lepton universality in top quarks pairs events Giacomo Da Molin IST
  24. Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares IST
  25. Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves IST
  26. Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud UC
  27. Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe FCUL
  28. The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho FCUL
  29. Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues FCUL
  30. Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco IST
  31. Developing Multi-Beam FLASH with Proton Beams Joana Leitão IST
  32. Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás IST
  33. Transporte de carga por iões negativos em gases nobres com dopantes eletronegativos Afonso Paixão Marques UC
  34. Timing Detectors and Measurements of Higgs Boson Properties Johan Wulff IST
  35. AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza UMinho
  36. Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa IST
  37. The Partonic Structure of Hadrons Eduardo Ferreira UniGraz
  38. Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes UMinho
  39. Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro IST
  40. Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli FCUL
  41. Search for New Physics in gauge boson scattering with the CMS experiment at the Large Hadron Collider Giovanni Marozzo IST
  42. Studying the origin of the elements with radioactive ions at ISOLDE/CERN Francisco Barba FCUL
  43. Study of hadronic interactions through the muon component of inclined extensive air showers with the Pierre Auger Miguel Martins IGFAE/USC
  44. Jetography in Heavy Ion Collisions André Cordeiro IST
  45. Atomic inputs for probing the r-process in kilonovae Ricardo Silva FCUL
  46. Differential tracking on disinformation websites and its impact on search engine results Íris Damião IST
  47. Heavy baryon excitations with functional calculatiosn: Confirming CERN discoveries and predicting new states André Torcato IST
  48. Probing the nature of the neutrino with large scale dark matter detectors Kai Jenkins UC
  49. Search for New Physics Phenomena at the ATLAS/LHC experiment with Anomaly Detection techniques based on Machine Learning Annalisa Berti UMinho
  50. Space Radiation in Low Earth Orbit and Space Weather on board the Space Rider Cristiana Francisco UC
  51. Optimization of the sensitivity of the LZ and XLZD detectors for Xe-136 0𝝂𝛽𝛽 decay and low mass WIMP searches Sandro Saltão UC
  52. The Social Bayesian Brain: The roles of identity complexity and informational environment in belief updating Angela Rijo ISCTE
  53. Neutrinoless double-beta decay search with SNO+: Enhancing sensitivity through improved event reconstruction using Machine Learning Beymar Surco UC
  54. Study of the influence of natural elevated background radiation on the growth of mint in the region of Covilhã Lígia Lopes UBI
  55. Charting QCD jet evolution in extreme conditions Nuno Olavo IST
  56. Advanced Methods for Solar Energetic Particle Events Characterization in the Inner Solar System António Pessanha Gomes IST
  57. Search for anomalous couplings in the HWW vertex with the ATLAS detector at the LHC Marina Kholodenko IST
  58. Probing the primordial quark gluon plasma with heavy flavour Henrique Legoinha IST
  59. Are radiocesium and natural radioisotopes ( 238U and progeny, 232Th and progeny, 40K, 7Be) good tracers to understand the erosion processes and dispersion of contaminants in Serra da Estrela? Radioprotection concern? Caroline Licour UBI
  60. Cancer weapons against neurodegeneration Francisca Afonso FCUL
  61. PicoMonitoring: sub-ns FLASH beam monitoring with Si devices Rui Fernandez IST
  62. Thermal and Optomechanical Design Improvement of Hera Mission LIDAR for Near-Earth Object Observation Pedro Conceição UBI
  63. Structural Health Monitoring System (SHM) for Reusable Spacecrafts Geraldo Rodrigues IST
  64. Space Debris algorithms on satellite constellation pictures for debris characterisation and orbit determination Joel Filho UC
  65. PhysiVerse - Leveraging Virtual Reality for Enhanced Physics Education José Graça FCUL
  66. Jet physics in the precision era of heavy-ion collision Marco Leitão IST
  67. Characterization of the energy spectrum of extensive air showers with the Pierre Auger Observatory data. Milton Freitas IST
  68. Measurements of Higgs boson properties and search for BSM physics Raphaël Guitton IST
  69. Cosmic-ray isotopic composition measurements with the Alpha Magnetic Spectrometer on the International Space Station João Carlos Antunes IST
  70. Development of a timing RPC-based neutron detector Giorgio Canezin UC
  71. SpaceRAD &#821.1.; An Integrated Framework for the Radiation Environment in Space, on Mars and on the Moon and its Implications for Human Space Flight Bruna Lima IST
  72. Development of a cubesat constelation payload detector demonstrator with polarimetric capabilities José Sousa UC
  73. Satellite avionics for navigation and space awareness applications Beltrán Arribas UBI

Master Thesis

Finished

  1. Vasco Neto – MSc, “Probing the Anti-Sickling Power of Distinct Drugs in Sickle Cell Disease”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  2. Inês Gomes – MSc, “Probing the Stability of Biomolecules in Deep Eutectic Solvents”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  3. Catarina Nascimento – MSc, “Molecular Mechanisms of Amyloid Aggregation in Neurodegenerative Diseases”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  4. 11/2024, Computational Modeling of Biopharmaceuticals Purification Systems, Jéssica Rodrigues, Master in Computational Biology and Bioinformatics, FCT UNL.
  5. Designing Optimal 3D Enzyme Computational Models for Efficient Plastic Degradation Student: Mariana Gomes Fernandes (Supervisor Principal: João Carneiro; Co-Supervisor: Sérgio F. Sousa e Diogo Pratas) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Dezembro de 2024
  6. Machine Learning Enhanced Optimization of Plastic-Degrading Enzymes for Sustainable Ocean Cleanup Student: Ana Clara Cerqueira (Supervisor Principal: João Carneiro; Co-Supervisor: Sérgio F. Sousa e Diogo Pratas) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Dezembro de 2024
  7. Discovery of New Molecules for the Treatment of Machado-Joseph Disease Student: Filipe Rocha Mestrado: Medicinal Chemistry (Supervisor Principal: Sérgio F. Sousa; Co-Supervisor: Fernanda Proença) Universidade do Minho, Portugal Dezembro de 2024
  8. Designing In-Silico Aptamers for Potential Use in Marine Bioremediation Student: Rafael Vieira Mestrado: Bioinformatics and Computational Biology (Supervisor Principal: Sérgio F. Sousa; Co-Supervisor: João Carneiro e Diogo Pratas) Faculdade de Ciências da Universidade do Porto, Portugal Novembro 2024
  9. Desenvolvimento de nanomateriais hidrofílicos de carbono com propriedades biomiméticas de enzimas antioxidantes Student: Andreia Daniela Rosa Veloso (Supervisor Principal: Maria C. Oliveira; Co-Supervisors: Nuno Cerqueira e Romeu Videira) Doutoramento: Doutoramento em Ciências Químicas e Biológicas (PhD) Universidade de Trás-os-Montes e Alto Douro, Portugal Novembro de 2024
  10. Evaluation of acute hepatic toxicity and inflammation induced by nitrosamines in Mus musculus and Danio rerio Student: Isabelly Annunciato (Supervisor Principal: Marcos Hikari Toyama; Co-Supervisor: Sérgio Sousa) Mestrado: Biodiversity in Coastal Environments Institute of Biosciences, Paulista State University, Brazil Agosto de 2024
  11. Lohmann D (2023-2024, main supervisor). Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios. MSc in Computational Biology and Bioinformatics thesis. NOVA School of Science and Technology, NOVA University of Lisbon, Portugal. 91 pp. Supervisor team Dr. Carolina Madeira and Pedro M. Costa. Funded by project EASMO BiodivClim/0001/2019. Defended 17-12-2024. http://hdl.handle.net/10362/182661
  12. Lopes J (2023-2024, co-supervisor). Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats. MSc in Computational Biology and Bioinformatics. NOVA School of Science and Technology, NOVA University of Lisbon, Portugal. 116 pp. Supervisor team Pedro M. Costa and Dr. Carolina Madeira. Funded by project ExtremeOceans PTDC/BIA-BMA/1494/2020. Defended 05-12-2024. http://hdl.handle.net/10362/181947
  13. Catarina Bernardo, MSc in Evolutionary and Developmental Biology, Ciências (09.2023-02.2024) Thesis: Signatures of adaptation at the mitochondrial level in endemic freshwater fish species from contrasting environments.
  14. Optimization of an Oscillating Water Column (OWC) pneumatic efficiency testing different geometries using CFD, Diana Arias, Instituto Superior Técnico, 2024
  15. Reconstrução de Eventos de Neutrinos Solares com Técnicas de Aprendizagem de Máquina Usando Dados da Experiência SNO+ Joan Kladnik Orientador: Nuno Barros 2024-12-06 UMinho
  16. Estudo da dispersão de partículas alfa em filmes finos Ana Campos Orientador: Luis Peralta 2024-01-05 FCUL
  17. Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission Francisca Santos Orientador: Patrícia Gonçalves 2024-07-01 IST
  18. search for dark matter (spin 1) João Lopes Carreira Orientador: António Onofre 2024-12-31 FCUL
  19. Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro Fábio do Carmo Orientador: Jorge Sampaio 2024-01-29 FCUL
  20. Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations Joana Vences Orientador: José Maneira 2024-12-27 FCUL
  21. Construção de um protótipo para o estudo da exalação de radão por materiais de construção Nuno Taborda Orientador: Luis Peralta 2024-01-11 FCUL
  22. Particle-Particle and Jet-Jet Angular Correlations at the Parton Level http://hdl.handle.net/10451/65219 Guilherme Calé Orientador: Grigorios Chachamis 2024-06-30 FCUL
  23. Integration of the HiRezBrainPET with a clinical PET/CT system – Image performance evaluation of a prototype for next-generation brain tomography Miguel Lopes Orientador: Patrícia Gonçalves 2024-07-01 IST
  24. Interlock electronics for the high Granularity Timing Detector od the ATLAS Maria Miguel Orientador: Ricardo Gonçalo 2024-02-28 UC
  25. Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider https://hdl.handle.net/10400.5/95506 Joana Reis Orientador: João Nuno Pires 2024-07-25 FCUL
  26. Pre-equilibrium of the Quark-Gluon Plasma Guilherme Crispim Orientador: Liliana Apolinário 2024-07-02 IST
  27. The deuteron as a six-quark state in QCD André Nunes Orientador: Ana Arriaga 2024-01-12 FCUL
  28. Searching for beyond Standard Model particles decaying to muon pairs in SND@LHC Henrique Santos Orientador: Nuno Leonardo 2024-11-28 IST
  29. Design and benchmark of an innovative concept to measure light charged particles in the R3B/FAIR using RPCs Diogo Miguel Orientador: Daniel Galaviz 2024-12-19 FCUL
  30. Planing for muon tomography campaigns in urban settings Francisco Manuel Ferreira Orientador: Sofia Andringa 2024-12-03 IST
  31. 3D imaging from underground with muon tomography Isabel Alexandre Orientador: Sofia Andringa 2024-12-03 IST
  32. Event Selection and Angular Reconstruction for W Boson Events at Future e+e− Colliders André Silva Orientador: Ricardo Gonçalo 2024-09-27 UC
  33. Thermal Analysis and Effects on Resolution of CZT Detectors exposed to LEO Conditions on board the International Space Station https://hdl.handle.net/10316/117946 Alexandra Roque Orientador: Rui Curado Silva 2024-09-30 UC
  34. Proton range verification for irradiation of anthropomorphic phantoms implemented in Geant4 Monte Carlo simulations Francisco Miguéis Orientador: Paulo Crespo 2024-09-23 UC
  35. New Physics searches at the LHC using Anomaly Detection Inês Moreira Orientador: Rute Pedro 2024-11-28 IST
  36. Quantum computing applications to quantum chromodynamics: Jet evolution in a quantum computer Gabriela Oliveira Orientador: Nuno Castro 2024-07-25 UMinho
  37. Anomaly detection as a quality control tool in an industrial context Miguel Peixoto Orientador: Nuno Castro 2024-12-11 UMinho
  38. Biophysical modelling and simulation of BFE/Au multifunctional nanoplatforms for proton therapy Bianca Alves Orientador: Jorge Sampaio 2024-12-19 FCUL
  39. Robust Anomaly Detection in Independent Searches for New Physics with the ATLAS/LHC Experiment Inês Pinto Orientador: Rute Pedro 2024-11-28 IST
  40. Improving the vacuum baseline for in-medium jet physics studies Diogo Costa Orientador: Liliana Apolinário 2024-11-27 IST
  41. Development of digital techniques for data processing and instrument control Gil Ramos Madeira Orientador: Nuno Barros 2024-09-30 UC
  42. Procura de acoplamentos anómalos do bosão de Higgs com o detetor ATLAS Marta Silva Orientador: Inês Ochoa 2024-12-03 IST
  43. Assembly and beam commissioning of the high rate TOF/SCI detector SAFARI Beatriz Amorim Orientador: Daniel Galaviz 2024-10-25 FCUL
  44. O Radão e a Radioatividade: presente no quotidiano e ausente no currículo escolar Carolina Rosa Orientador: Sandra Soares 2024-07-15 UBI
  45. Study of the hadronic interaction in the fixed-target experiment AMBER (CERN) Ema Fadiga Orientador: Carlos Azevedo 2024-12-02 UA
  46. In-medium Gluon Radiation in General Kinematics Afonso Guerreiro Orientador: Guilherme Milhano 2024-12-03 IST
  47. Multichannel study of cosmic ray variability over different temporal scales http://fisgeo.unipg.it/pacetti/3-LM-Margherita-Fioroni.pdf Margherita Fioroni Orientador: Nicola Tomassetti 2024-04-18 UniPerugia
  48. Using embeddings to infer diagnostics from medical prescriptions https://fenix.tecnico.ulisboa.pt/cursos/mecd/dissertacao/1972678479056342 Tiago Miranda Orientador: Joana Gonçalves-Sá 2024-11-18 IST
  49. Higgs boson properties and tau lepton identification at the 3 TeV Muon Collider http://cds.cern.ch/record/2913377 Lorenzo Valla Orientador: Michele Gallinaro 2024-09-30 LIPL
  50. Investigation of the Operation Modes of Optoelectronic Oscillators based on Resonant Tunnelling Diodes https://repositorio.ulisboa.pt/handle/10400.5/97384 Tiago Ferro Orientador: José Figueiredo 2024-07-01 FCUL
  51. Modelling the Evolution of the Galactic Disk Scale Height Traced by Open Clusters https://repositorio.ulisboa.pt/handle/10451/64671 Sandro Moreira Orientador: André Moitinho 2024-04-01 FCUL
  52. E(xtraterrestris). Coli : adapting genome-scale metabolic models to non-standard thermodynamical constraints http://hdl.handle.net/10451/64476 Lucas Monteiro Orientador: André Moitinho 2024-03-01 FCUL
  53. Galactic and Extragalactic Insights: A Visualisation Approach to Gaia Data Exploitation http://hdl.handle.net/10400.5/97170 Maria Eduarda Pimentel Orientador: André Moitinho 2024-04-01 FCUL
  54. Assessment of wave overtopping at Praia da Vitória, Terceira, Azores, with SWASH model, by DINUSH SHAYAMAN PRIYANKER BADDAVIDANA, Master’s in Coastal Hazards, Risks, Climate Change Impacts and Adaptation, UAlg, Delft. Submitted for defence.

Ongoing

  1. Duque A (2024 to present, main supervisor). Computational tools to assess adaptation and resilience to thermal stress in intertidal fish: a functional genomics approach. MSc in Computational Biology and Bioinformatics. NOVA School of Science and Technology, Portugal. Supervisor team Dr. Carolina Madeira and Prof. Pedro M. Costa. Funded by project ExtremeOceans PTDC/BIA-BMA/1494/2020. (status – ongoing).
  2. Estêvão Faustino, MSc in Evolutionary and Developmental Biology, Ciências (09.2023-03.2025) Thesis: Unravelling hybridization dynamics of Iberian chubs through demographic modelling.
  3. searck for dark matter with top quarks Gonçalo Freitas Orientador: António Onofre FCUL
  4. Study of neutrino interactions in the LZ Dark Matter detector Natalija Novak Orientador: Alexandre Lindote UniGraz
  5. Life prospection on Mars - Studing the Martian Subsurface Radiation Environment Igor Miguel Gago Orientador: Patrícia Gonçalves IST
  6. The soft-hard antenna spectrum in presence of a QGP Tomás Cabrito Orientador: Guilherme Milhano IST
  7. Gamma-ray Polarization in BL Lac Objects with AMEGO André Neves Orientador: Rui Curado Silva FCTUC
  8. Simulations and benchmark of a fast neutron detector for nuclear astrophysics Carolina Felgueiras Orientador: Daniel Galaviz FCUL
  9. Isotope Studies with the Alpha Magnetic Spectrometer (AMS) Guilherme Gaspar Orientador: Fernando Barão IST
  10. Configuration of the Interlock-FPGA for the HGTD Detector Rui Vieira Orientador: Helena Santos IST
  11. Configuration of the Monitoring FPGA for the HGTD Interlock Alexandre Parreira Orientador: Helena Santos IST
  12. Heavy Quarks Formation time Inês Alexandre Serra Orientador: Liliana Apolinário IST
  13. THOR Project Scientific Payload Environmental Tests Validation Mário Cainé Orientador: Rui Curado Silva UC
  14. Polarimetry with THOR-SR Mission CdTe Gamma-Ray Tracker Development Models Mariana Letra Orientador: Rui Curado Silva UC
  15. Associated production of Dark Matter with heavy fermions at the RUN3 of the LHC https://hdl.handle.net/1822/92171 Rui Miguel Silva Orientador: António Onofre UMinho
  16. Space Rider maiden flight orbital particles identification using machine learning techniques Joana da Orada Orientador: Rui Curado Silva UC
  17. Acceleration of the ATLAS Calorimeter Calibration Algorithms using GPUs Bruno Semião Orientador: Patricia Conde IST
  18. Search for central exclusive production of tau+ tau- pairs in proton-proton collisions at the LHC Madalena Ferreira Orientador: Jonathan Hollar UA
  19. 116Sn(p,g)117Sb reaction cross-section determination at energies relevant for the astrophysical p-process using gamma- and X-rays emission yields Ricardo Pires Orientador: Daniel Galaviz FCUL
  20. Charmonium production in hadron collisions at the COMPASS experiment Bárbara Pereira Orientador: Catarina Quintans FCUL
  21. Antiproton production in proton on helium collisions at the AMBER Experiment Guilherme Almeida Orientador: Catarina Quintans FCUL
  22. AMEGO science potential and impact on aviation safety of TGF analysis Filipa Bessa Almeida Orientador: Rui Curado Silva UC
  23. Towards the neutrinoless double-beta decay study with SNO+: radioactive background characterisation with SNO+ scintillator data Manuel Abreu Orientador: Valentina Lozza IST
  24. Characterization of anomalous air shower events in SWGO Inês Martins Orientador: Ruben Conceição IST
  25. THOR OBC Scientific Operations Pedro Carmo Orientador: Rui Curado Silva UC
  26. Imagiologia por raios gama espontâneos para verificação de alcance de feixes de hélio Gegimma José Orientador: Paulo Crespo UC
  27. Future collider calorimeter optimisation with machine learning Bruno Rodrigues Orientador: Inês Ochoa FCUL
  28. Celestial Objects Position Compton Reconstrunction with THOR Duarte Rodrigues Orientador: Rui Curado Silva UC
  29. Graphical Neural Learning applied to jets produced in heavy-ion collisions Pedro Esperanço Orientador: Helena Santos IST
  30. Deteção de Flashes de Raios-gama Terrestres para a Segurança Aérea Bruna Filipa Frade Jorge Orientador: Rui Curado Silva UC
  31. TBC Carolina Miranda Orientador: Gonçalo Ribeiro IST
  32. Análise dos registos de TGFs no espaço e a sua implicação no processo de emissão nas nuvens comulonimbus Henrique Gaspar Orientador: Rui Curado Silva UC
  33. Desenvolvimento de algoritmos de trigger com GPUs Gabriela Sereniski Orientador: José Rufino IPB
  34. Identification of UHE neutrino events in vertical air showers David Dias Orientador: Ruben Conceição IST
  35. Using Machine Learning algorithms to discriminate 0𝝂𝛽𝛽 decay and background events in xenon time projection chambers João António Rodrigues Orientador: Alexandre Lindote UC
  36. Pile-up event identification and rejection in SNO+: enhancing the signal to noise ratio Tomás Baltazar Orientador: Valentina Lozza IST
  37. Electronics for the High Granularity Timing Detector of the ATLAS Experiment Carlos Brito Orientador: Ricardo Gonçalo UC
  38. Impacto de atmosferas ricas em radão no crescimento e desenvolvimento da Mentha spicata Mariana Vicente Orientador: Sandra Soares UBI
  39. Aplicação de AI no steering de um Sistema de Secagem Industrial Leonor Martins Orientador: Francisco Neves UC
  40. Calorimetry studies at the Future Circular Collider Ariana Queda Orientador: Ricardo Gonçalo UC
  41. Design optimization for a flat-panel PET scanner with DoI capability Marta Simões Orientador: Patrícia Gonçalves IST
  42. Conceito de um detector baseado em nRPCs para neutrões epitérmicos e rápidos Jesús Villoria Orientador: Luís Margato UC
  43. Avaliação da taxa de exalação de radão de materiais de construção Thais Alves Orientador: Sandra Soares UBI
  44. Optimization of the local reconstruction in a high granular calorimeter using a heterogenous computing model Daniela Cardoso Orientador: Pedro Ferreira da Silva IST
  45. Search for new physics with forward protons at the LHC Pedro Batista Orientador: Jonathan Hollar FCUL
  46. Measurement of muon flux at the LHC Alexandre Mendonça Orientador: Nuno Leonardo IST

Patents

Datasets

  1. SeaTox toxin database [Version 12.2024.001]. Zenodo. doi:10.5281/zenodo.14355541).

Courses

  1. Course for Biochemistry BSc Degree: Introduction to Biomolecular Simulation, at FCT UNL. The course aims to introduce students to the field of biomolecular simulation. HPC computing time for students.
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