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International articles with referee Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 1...

SLA With Instituo Superior de Agronomia (ISA) related with the GBIF.PT activities. The Full document can be found here Supported service: https://www.gbif.pt/

Ways to add a new product to an existing distribution (Work in progress) dir structure: /var/www/be/ data/ (The latest json data for the FE) ├── config.js ├── distributions/ │ ├── CMD-ONE │ │ ├── 0.0.0.json │ │ └── ... │ ├── CMD-...

Ways to add a new distribution (Work in progress) cd /var/www/be Create distribution folder: mkdir data/distributions/%distribution-name% Use/Copy the template: cp SW/templates/distribution.yaml ./ Convert the yaml to json: (need to have n...

IBERGRID 2022 – Iberian Grid Infrastructure Conference, Faro, October 11-13, 2022 Official Programme First EOSC Iberian Tripartite Workshop, Faro, October 10, 2022 Official Programme EOSC-Synergy All Hands Meeting, Faro, October 12-13, 2022 O...

Facilitating access to HPC via Containers [materials] LatticeNET School on Computing in HEP 2022 Location: Benasque, Spain, 18-19 September 2022 Infrastructure for Storage and Sharing [materials]. Training Data Stewards for Life Sciences, Biodata ...

Chance or curse? The consequences of hybridization in a changing world" Human Frontier Science Program – Young Researcher Award (RGY0081/2020) de 2020-2023 Projecto "HYBRIDOMICS: Can hybridization fuel adaptation and species response to environmental c...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 3 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública (ENSP) 1 Iscte - Instituto Universi...

This page it's dedicate to users who want to run GPU's and have a QOS. GPU JOB submission using QOS In this example we will use the atributed QOS=gpu097822021 to be used for GPU and submit a job for the V100 Nvidia. #!/bin/bash #SBATCH --job-name=prod0...

The consuption can be monitored by a user by the report command.The command shows to two period current month + full consuntpion for each associated QOS. Users with more than one QOS will show separetely [root@cirrus08 ~]$ report --user fabiananeves ...

The list of server class types available to general users in the Cirrus HPC/HTC clusters. INCD-Lisbon login machine: cirrus.a.incd.pt Rocky Linux 8 Type CPU Memory/node #cores/node #servers infiniband queue target users A5 AMD EPYC 7643 512GB 96 20...

Select any GPU On this example we choose one GPU with at least 8192 MB memory. #!/bin/bash #SBATCH --partition=gpu #SBATCH --gres=gpu #SBATCH --mem=8192MB COMMON=/usr/local/cuda/samples/common SAMPLE=/usr/local/cuda/samples/5_Simulations/nbody [ -d ../co...

In order to use QOS you will to have an assigned user QOS. In the following example the user will submit a job to the fct partition using an specific created cpca097822021. #!/bin/bash #SBATCH --job-name=prod01 #SBATCH --time=0:10:0 #SBATCH --partition=f...

Quality of Service (QoS) is used to limite the characteristics that a job can have. Default QOS per partition For every partition (fct, gpu, etc), there is a Quality of Service with different defined parameters like MaxJobs, MaxSubmitJobs. This parameters ac...

You can find the INCD HPC training basic level here

International articles with referee Gonçalves, M., Bernardo, C., Bernardino, M., & Soares, C. G. (2022). Climate change impacts on the wave energy in the Azores Islands. Trends in Renewable Energies Offshore, 43-51. CAMPOS, S., RODRIGO, A.P., MOUTINHO C...

FCT 2022-2024 (PTDC/BIA-EVL/4345/2021) HYBRIDOMICS: Can hybridization fuel adaptation and species response to environmental change? Genomics and proteomics of endemic Iberian freshwater fish. Human Fronstier Science Program 2020-2024 (RGY0081/2020) Chanc...