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The old Medusa wiki page can be found here

Cluster specific information CNCA provides acess to several HPC computing clusters. The policies, limits and characteristics of these HPC clusters can be different, always check where you are running and whether the manuals and/or instructions are the correct ...

How to use allocated resources User Access User access must be done using an ssh client, for that you need and ssh key created on your local machine, more on that in this link, if you need help accessing the machine or creating your ssh key, please contact us ...

Internationl Paper with refere Nogueira PJ, de Araújo Nobre M, Nicola PJ, Furtado C, Vaz Carneiro A. Excess Mortality Estimation During the COVID-19 Pandemic: Preliminary Data from Portugal. Acta Med Port [Internet]. 2020 Jun. 1 [cited 2023 Jan. 23];33(6):...

Journal Paper with direct contribution de Almeida, Duarte Sampaio Belchior. Urban Tourism Crowding Dynamics: Carrying Capacity and Digital Twinning. Diss. ISCTE-Instituto Universitario de Lisboa (Portugal), 2021. https://www.proquest.com/openview/e302b10227e...

New FCT and international funded projects supported by INCD in 2020. FA_05_2017_007 "The MARVEN Project – The Portuguese biotechnological database for marine animal venoms and toxins" Funding agency: Fundo Azul, Portugal PTDC/BTA-BTA/28650/2017 Worm...

New FCT and international funded projects supported by INCD in 2021. PTDC/BIA-EVL/1100/2020 "Harnessing comparative genomics to understand the role of horizontal acquired genes in the evolution of yeast metabolism" POCI-01-0247-FEDER-039890 GIIP - Ge...

List all current jobs for a user: squeue -u <username> List all running jobs for a user: squeue -u <username> -t RUNNING List all pending jobs for a user: squeue -u <username> -t PENDING List all current jobs in the shared partition for...

International articles with referee Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 1...

SLA With Instituo Superior de Agronomia (ISA) related with the GBIF.PT activities. The Full document can be found here Supported service: https://www.gbif.pt/

Chance or curse? The consequences of hybridization in a changing world" Human Frontier Science Program – Young Researcher Award (RGY0081/2020) de 2020-2023 Projecto "HYBRIDOMICS: Can hybridization fuel adaptation and species response to environmental c...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 3 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública (ENSP) 1 Iscte - Instituto Universi...

This page it's dedicate to users who want to run GPU's and have a QOS. GPU JOB submission using QOS In this example we will use the atributed QOS=gpu097822021 to be used for GPU and submit a job for the V100 Nvidia. #!/bin/bash #SBATCH --job-name=prod01 #S...

The consuption can be monitored by a user by the report command.The command shows to two period current month + full consuntpion for each associated QOS. Users with more than one QOS will show separetely [root@cirrus08 ~]$ report --user fabiananeves ...

The list of server class types available to general users in the Cirrus HPC/HTC clusters. CNCA-Lisbon (Cirrus-A) login machine: cirrus.a.acnca.pt Rocky Linux 8 Type CPU Memory/node #cores/node #servers infiniband queue target users A5 AMD EPYC 7643...

Select any GPU On this example we choose one GPU with at least 8192 MB memory. #!/bin/bash #SBATCH --partition=gpu #SBATCH --gres=gpu #SBATCH --mem=8192MB COMMON=/usr/local/cuda/samples/common SAMPLE=/usr/local/cuda/samples/5_Simulations/nbody [ -d ../co...

In order to use QOS you will to have an assigned user QOS. In the following example the user will submit a job to the fct partition using an specific created cpca097822021. #!/bin/bash #SBATCH --job-name=prod01 #SBATCH --time=0:10:0 #SBATCH --partition=fct #S...

Quality of Service (QoS) is used to limite the characteristics that a job can have. Default QOS per partition For every partition (fct, gpu, etc), there is a Quality of Service with different defined parameters like MaxJobs, MaxSubmitJobs. This parameters act ...