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Dedicated resources

Customized resources LNEC users

Cluster MEDUSA - Gorgon201: Servidores TYAN Servidores TYAN FT48B8812 em rede Ethernet (1 Gbit/s) 1 servidor, 32 cores, 8 GB de RAM por core (256 GB de RAM por servidor) 1 disco de 280 GB Servidores instalados com Scientific Linux 6, versão x86_64 pro...

Old wiki documentation

Customized resources LNEC users

The old Medusa wiki page can be found here

Login servers

How to access Login machines

INCD-Lisbon HPC and HTC cluster (Cirrus-A) Access to the INCD advanced computing facilities in Lisbon is performed with: Centos7 Login server ssh -l username cirrus.a.incd.pt Note For further information on how to obtain access see the Getting Started...

Start here

Manage jobs

Cluster specific information INCD provides acess to several HPC computing clusters. The policies, limits and characteristics of these HPC clusters can be different, always check where you are running and whether the manuals and/or instructions are the correct...

Information

User Support Information - RNCA / FCT c... CPCA

How to use allocated resources User Access User access must be done using an ssh client, for that you need and ssh key created on your local machine, more on that in this link, if you need help accessing the machine or creating your ssh key, please contact u...

All Users

Customized resources

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2020

Scientific Publications

Internationl Paper with refere Nogueira PJ, de Araújo Nobre M, Nicola PJ, Furtado C, Vaz Carneiro A. Excess Mortality Estimation During the COVID-19 Pandemic: Preliminary Data from Portugal. Acta Med Port [Internet]. 2020 Jun. 1 [cited 2023 Jan. 23];33(6):...

2021

Scientific Publications

Journal Paper with direct contribution de Almeida, Duarte Sampaio Belchior. Urban Tourism Crowding Dynamics: Carrying Capacity and Digital Twinning. Diss. ISCTE-Instituto Universitario de Lisboa (Portugal), 2021. https://www.proquest.com/openview/e302b10227e...

2020

Usage Metrics Supported Projects

New FCT and international funded projects supported by INCD in 2020. FA_05_2017_007 "The MARVEN Project – The Portuguese biotechnological database for marine animal venoms and toxins" Funding agency: Fundo Azul, Portugal PTDC/BTA-BTA/28650/2017 Worm...

2021

Usage Metrics Supported Projects

New FCT and international funded projects supported by INCD in 2021. PTDC/BIA-EVL/1100/2020 "Harnessing comparative genomics to understand the role of horizontal acquired genes in the evolution of yeast metabolism" POCI-01-0247-FEDER-039890 GIIP - Ge...

Jobs information

Manage jobs Manage slurm jobs

List all current jobs for a user: squeue -u <username> List all running jobs for a user: squeue -u <username> -t RUNNING List all pending jobs for a user: squeue -u <username> -t PENDING List all current jobs in the shared partition for...

Architecture

EGI Repositories

Data Structure

EGI Repositories Requirements

NEW implementation name : Software name version : version of the software name contact : contact name of the software technicalContact: technical contact name of the developper description : Software shor descripion releaseDate : Date of the relea...

2022

Scientific Publications

International articles with referee Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 1...

Active SLA

Service Level Agreements

SLA With Instituo Superior de Agronomia (ISA) related with the GBIF.PT activities. The Full document can be found here Supported service: https://www.gbif.pt/

2022

Usage Metrics Supported Projects

Chance or curse? The consequences of hybridization in a changing world" Human Frontier Science Program – Young Researcher Award (RGY0081/2020) de 2020-2023 Projecto "HYBRIDOMICS: Can hybridization fuel adaptation and species response to environmental c...

2020

Usage Metrics Supported Institutions

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

2021

Usage Metrics Supported Institutions

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 4 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública ENSP) 1 Iscte - Instituto Universit...

2022

Usage Metrics Supported Institutions

Ensino Superior Institution Number of different groups Faculdade de Ciências da Universidade de LisboaCUL 3 Universidade de Aveiro 1 Instituto Superior Técnico (IST) 2 Escola Nacional de Saúde Pública (ENSP) 1 Iscte - Instituto Universi...

Use QOS to run GPU jobs

Manage jobs GPU user guide

This page it's dedicate to users who want to run GPU's and have a QOS. GPU JOB submission using QOS In this example we will use the atributed QOS=gpu097822021 to be used for GPU and submit a job for the V100 Nvidia. #!/bin/bash #SBATCH --job-name=prod0...