Recently Updated Pages
2018
New FCT and international funded projects supported by INCD in 2018. POCI-01-0145-FEDER-007679 ...
2019
New FCT and international funded projects supported by INCD in 2019. UID/BIA/00329/2013 "CENTRE...
2020
New FCT and international funded projects supported by INCD in 2020. FA_05_2017_007 "The MARV...
2021
New FCT and international funded projects supported by INCD in 2021. PTDC/BIA-EVL/1100/2020 "...
2022
Chance or curse? The consequences of hybridization in a changing world" Human Frontier Science...
Jobs information
List all current jobs for a user: squeue -u <username> List all running jobs for a user: ...
Use of user QOS for CPU jobs
In order to use QOS you will to have an assigned user QOS. In the following example the user will...
INCD basic level
You can find the INCD HPC training basic level here
Quality of Service (QOS)
Quality of Service (QoS) is used to limite the characteristics that a job can have. Default QOS ...
Use QOS to run GPU jobs
This page it's dedicate to users who want to run GPU's and have a QOS. GPU JOB submission usin...
My first slurm job
Examples Submit a simple MPI job On this example we run a small MPI application doing the fo...
How to selected a GPU
Select any GPU On this example we choose one GPU with at least 8192 MB memory. #!/bin/bash ...
Login servers
INCD-Lisbon HPC and HTC cluster (Cirrus-A) Access to the INCD advanced computing facilities in ...
How to connect to the HPC and HTC clusters
public login services Access to the INCD clusters is only available to registered users. To us...
Job pipeline using slurm dependencies
Some times we need to launch a list of jobs that execute in sequence, one after another. In thos...
Queues information
List of Queues INCD-Lisbon cluster (cirrus.a.incd.pt) Name Jobs max elapsed time access Me...
How to run parallel job's with srun
srun : Used to submit/initiate job or job step Typically, srun is invoked from a SLURM job scr...
Show jobs information in queue
squeue: view information about jobs located in the Slurm scheduling queue. gqueue: squeue alias ...
stop or cancel jobs
scancel : used to signal jobs or job steps that are under the control of Slurm The command scan...
show job accounting data
sacct: displays accounting data for all jobs and job steps in the Slurm job accounting log or Slu...