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Software List

Software available at the INCD Cirrus HPC and HTC clusters.

INCD-Lisbon HPC and HTC cluster (Cirrus-A)


-------------------------- /cvmfs/sw.el7/modules/LIP ---------------------------
atlasSetup              geant/4.10.02.p01       pythia/8.2.15
clhep/2.2.0.8           geant/4.10.03           pythia/8.2.35
clhep/2.3.1.1           geant/4.10.05.p01       pythia/8.2.40
clhep/2.3.2.2           geant/4.10.06           root/5.34.36
clhep/2.3.4.3           geant/4.10.06.p01       root/6.04.02
clhep/2.4.1.3           hepmc/2.6.9             root/6.08.00
delphes/3.4.1           heptoptagger/2.0        root/6.10.02
delphes/3.4.2pre10      lhapdf/6.1.6            root/6.12.06
delphes/3.4.2pre15      lhapdf/6.2.3            root/6.14.06
fastjet/3.3.0           madgraph/2.6.0          root/6.16.00
fluka/2011.2x.7         madgraph/2.6.1          root/6.18.04
gcc74/clhep/2.4.1.3     pythia/6.4.26           topas/3.3.beta1
gcc74/geant/4.10.05.p01 pythia/6.4.28           xroot/4.3.0

-------------------------- /cvmfs/sw.el7/modules/soft --------------------------
aster-13.1.0                 hdf5-1.8.16
blat-36.2                    homer-4.8
boost-1.55                   intel/2019
bowtie2-2.3.0                intel/2019.mkl
clang/7.0.0                  intel/2019.mpi
clang/ngspice/30             intel/openmpi/4.0.3
clang/openmpi/4.0.1-test     intel/swan/41.31
cmake/3.11.2                 kallisto-0.43.0
cmake/3.5.2                  macs-1.4.2
conn-R2018b                  matlab/R2018a
cuda                         matlab/R2018b
cuda-10.1                    matlab/R2019b
cuda-10.2                    mpich-3.2
cuda-8.0                     mvapich2-1.8
cuda-9.0                     netcdf/4.6.1
DATK                         netcdf2/4.6.1
fastqc-0.11.5                netcdf-fortran/4.4.4
fftw/3.3.4                   ngspice/30
fftw/3.3.5                   openmpi/2.1.0
gcc-4.8                      openmpi-1.10.2
gcc55/openmpi/4.0.1          parallel/20180622
gcc-5.5                      plumed-2.2.1
gcc63/mpich-3.2              python/3.7.2
gcc63/netcdf/4.6.1           python-2.7.11
gcc63/netcdf-fortran/4.4.4   python-3.5.1
gcc63/ngspice/30             python-3.5.4
gcc63/openmpi/2.1.0          r-3.2.5
gcc63/openmpi-1.10.2         r-3.5.2
gcc63/r-3.4.2                rt
gcc63/schism/5.4.0           sbcl-1.3.4
gcc63/scipion/2.0_2019-04-23 schism/5.4.0
gcc-6.3                      sicer-1.1
gcc-7.3                      star-2.5.2b
gcc74/gromacs/2019.4         trimmomatic-0.33
gcc74/openmpi/4.0.1          udocker/1.1.3
gcc74/plumed/2.5.3           weblogo-2.8.2
gcc-7.4                      wine/4.2
gromacs-4.6.7

INCD-Minho HPC and HTC cluster (Cirrus-B)


ISEC-Coimbra HPC cluster (Cirrus-C)