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AlphaFold

  1. [INCD Local Installation](#INCD Local Installation)
  2. [How to Run](#How to Run)
  3. References

INCD Local Installation

The INCD team prepare a local installation of AlphaPhold using a container based on UDOCKER (instead of DOCKER) and includes the Genetic Database.

The local installation provide the AlphaFold version 2.1.1 over a container based on Ubuntu 18.04 distribution with cuda-11.0 and cudnn-8.

Environment

The environment is activate with command

$ module load udocker/alphaphold/2.1.1

this will activate automatically a virtual environment ready to start the AlphaFold container throught the python script run_udocker.py.

Data Base Location

The Genetic Database is installed bellow the filesystem directory /users3/data/alphafold on read-only mode, upgrades may be requested using the helpdesk@incd.pt address.

run_udocker.py Script

How to Run

Run Examples

References

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