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2023

International articles with referee

  1. Gonçalves, M., Bernardo, C., Bernardino, M., & Soares, C. G. (2022). Climate change impacts on the wave energy in the Azores Islands. Trends in Renewable Energies Offshore, 43-51.
  2. CAMPOS, S., RODRIGO, A.P., MOUTINHO CABRAL, I. MENDES, V., MANADAS, B., D'AMBROSIO, M. & COSTA, P.M. (2023). An exploration of novel bioactives from the venomous marine annelid Glycera alba. Toxins, 15, 655 (doi: 10.3390/toxins15110655).
  3. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano et al. (2023) "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Genome Medicine 15: 43. http://dx.doi.org/10.1186/s13073-023-01196-1.
  4. Santos, João Dourado; Sobral, Daniel; Pinheiro, Miguel; Isidro, Joana et al. (2023) “INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance”. Research Square. https://doi.org/10.21203/rs.3.rs-3556988/v1.
  5. Substitution Models of Protein Evolution with Selection on Enzymatic Activity Ferreiro D., Khalil R., Sousa S.F., and Arenas M. Molecular Biology and Evolution 41 (2) (2024) Article | DOI: 10.1093/molbev/msae026
  6. Exploiting Locusta migratoria as a source of bioactive peptides with anti-fibrosis properties using an in silico approach Teixeira C.S.S., Biltes R., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food and Function 15 (2) pp.493-502 (2023) Article | DOI: 10.1039/d3fo04246d
  7. Crystal structures of Streptomyces tsukubaensis sigma factor SigG1 and anti-sigma RsfG Leite J.P., Lourenco F., Oliveira R., Sousa S.F., Mendes M.V., and Gales L. Journal of Structural Biology 215 (4) (2023) Article | DOI: 10.1016/j.jsb.2023.108038
  8. In silico identification of novel PqsD inhibitors: promising molecules for quorum sensing interference in Pseudomonas aeruginosa Vieira T.F., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering 9 (1) pp.7-19 (2023) Article | DOI: 10.1039/d3me00107e
  9. Use of lysinated multiwalled carbon nanotubes with carbohydrate ligands as a doxorubicin nanocarrier: A molecular dynamics analysis Martins F.G., Thakur C.K., Karthikeyan C., Moorthy N.S.H.N., and Sousa S.F. Carbon Trends 12 (2023) Article | DOI: 10.1016/j.cartre.2023.100280
  10. Modulation of the functional interfaces between retroviral intasomes and the human nucleosome Mauro E., Lapaillerie D., Tumiotto C., Charlier C., Martins F., Sousa S.F., Metifiot M., Weigel P., Yamatsugu K., Kanai M., Munier-Lehmann H., Richetta C., Maisch M., Dutrieux J., Batisse J., Ruff M., Delelis O., Lesbats P., and Parissi V. mBio 14 (4) (2023) Article | DOI: 10.1128/mbio.01083-23
  11. An in silico approach to unveil peptides from Acheta domesticus with potential bioactivity against hypertension, diabetes, cardiac and pulmonary fibrosis Teixeira C.S.S., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food Research International 169 (2023) Article | DOI: 10.1016/j.foodres.2023.112847
  12. Structural, physicochemical and anticancer study of Zn complexes with pyridyl-based thiazolyl-hydrazones Araskov J.B., Maciejewska N., Olszewski M., Visnjevac A., Blagojevic V., Fernandes H.S., Sousa S.F., Puerta A., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-de-Luzuriaga J.M., Uguz O., Koca A., Todorovic T.R., and Filipovic N.R. Journal of Molecular Structure 1281 (2023) Article | DOI: 10.1016/j.molstruc.2023.135157
  13. TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa Carneiro J., Magalhaes R.P., de la Oliva Roque V.M., Simoes M., Pratas D., and Sousa S.F. Journal of Computer-Aided Molecular Design 37 (5-6) pp.265-278 (2023) Article | DOI: 10.1007/s10822-023-00505-5
  14. Susana Simões, Miguel Lino, Angela Barrera, Catarina Rebelo, Francesca Tomatis, Andreia Vilaça, Christopher Breunig, Andrea Neuner, João Peça, Ricardo González, Alexandra Carvalho, Stefan Stricker, and Lino Ferreira. ‘Near-infrared light-activated formulation for the spatial controlled release of CRISPR-Cas9 ribonucleoprotein for brain gene editing’, accepted in Angewandte Chemie.
  15. Ricardo D. González, Susana Simões, Lino Ferreira, and Alexandra T. P. Carvalho. ‘Designing Cell Delivery Peptides and SARS-CoV-2-Targeting Small Interfering RNAs: A Comprehensive Bioinformatics Study with Generative Adversarial Network-Based Peptide Design and In Vitro Assays’, Molecular Pharmaceutics, 2023, 20, 12, 6079–6089, doi:10.1021/acs.molpharmaceut.3c00444.
  16. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Insights into the Degradation of Polymer–Drug Conjugates by an Overexpressed Enzyme in Cancer Cells’, Journal of Medicinal Chemistry, doi: 10.1021/acs.jmedchem.2c01781.
  17. Teodoro, M. C., Conceição, E. M., Sinval, J., de Lourdes, M., & Neufeld, C. B. (2023). Adaptation, confirmatory factor analysis, and psychometric properties of the Brazilian version of the Repetitive Eating Questionnaire. International Journal of Eating Disorders. https://doi.org/10.1002/eat.23943
  18. Mixão, V., Pinto, M., Sobral, D. et al. ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Genome Med 15, 43 (2023). https://doi.org/10.1186/s13073-023-01196-1
  19. João Dourado Santos, Daniel Sobral, Miguel Pinheiro et al. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance, 07 November 2023, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-3556988/v1]
  20. Carvalho J., Faria R., Butlin R.K., Sousa V.C. (2023) poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14185
  21. Carvalho J., Morales H., Faria R., Butlin R.K., Sousa V.C. (2023) Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13834
  22. Casanova, J., Sinval, J., & Almeida, L. (2024). Éxito académico, compromiso y autoeficacia de los estudiantes universitarios de primer año: variables personales y desempeño del primer semestre. Anales de Psicología / Annals of Psychology, 40(1), 44–53. https://doi.org/10.6018/analesps.479151
  23. F.J.A.L. Cruz and J.P.B. Mota, "Partial Denaturation of Double-Stranded DNA on Pristine Graphene under Physiological-like Conditions", Liquids 2023, 3, 168.
  24. F.J.A.L. Cruz and J.P.B. Mota, “Structure and Thermodynamics of Empty Clathrate Hydrates bellow the Freezing Point of H2O”, 14th Int. Chem. Bio. Eng. Conference, Bragança, Portugal, September 2023.
  25. Wang, S., Islam, H., Abdelwahab, H.S., Guedes Soares, C., 2024. Uncertainty analysis of CFD solver for predicting ship responses in head waves, in preparation.
  26. Gomes I., Galamba N., Protein Stability in a Natural Deep Eutectic Solvent: Preferential Hydration or Solvent Slaving?, J. Chem. Phys., 159, 235101, 2023 (URL: https://doi.org/10.1063/5.0177095)
  27. Neto V., Victor BL. , Galamba N., Cyclic Peptides as Aggregation Inhibitors for Sickle Cell Disease, J. Med. Chem., 66, 23, 16062–16074, 2023 (URL: https://doi.org/10.1021/acs.jmedchem.3c01484)
  28. Martins, G., Nascimento, C., Galamba, N., Mechanistic Insights into Polyphenols’ Aggregation Inhibition of α-Synuclein and Related Peptides, ACS, Chem. Neurosci., 14, 10, 1905–1920, 2023 (URL: https://doi.org/10.1021/acschemneuro.3c00162)
  29. Monteiro, H., Paiva, A., Duarte, R.C., Galamba, N., On the not so anomalous water-induced structural transformations of choline chloride–urea (reline) deep eutectic system, Physical Chemistry Chemical Physics 25 (1), 439-454, 2023 (URL: https://doi.org/10.1039/D2CP04139A)
  30. Dias, A. M. G. C., Moreira, I. P., Lychko, I., Soares, C. L., Nurrito, A., Barbosa, A. J. M., Lutz-Bueno, V., Mezzenga, R., Carvalho, A. L., Pina, A. S. & Roque, A. C. A. (2023). Hierarchical self-assembly of a reflectin-derived peptide. Front. Chem., 11.
  31. Almeida, J., Palma, C., Félix, P.M., Brito, A.C. (2023). Long-term variation of dissolved metals and metalloid in the waters of an Atlantic mesotidal estuary (Sado Estuary, Portugal). Marine Pollution Bulletin, 188, 114615. HYPERLINK "https://doi.org/10.1016/j.marpolbul.2023.114615"https://doi.org/10.1016/j.marpolbul.2023.114615
  32. Brito, A.C., Pereira, H., Picado, A., Cruz, J., Cereja, R., Biguino, B., Chainho, P., Nascimento, A., Carvalho, F., Cabral, S., Santos, C., Palma, C., Borges, C:, Dias, J.M. (2023). Increased oyster aquaculture in the Sado Estuary: how to ensure ecosystem sustainability? Science of the Total Environment, 855, 158898.
  33. Favareto, L., Brotas, V., Rudorff, N., Zacarias, N., Tracana, A., Lamas, L., Nascimento, A., Ferreira, A., Gomes, M., Borges, C., Palma, C., Brito, A.C. (2023). Response of phytoplankton to coastal upwelling: the importance of temporal and spatial scales. Limnology and Oceanography, 68, 1376-1387. https://doi.org/10.1002/lno.12353
  34. Ferreira, A., Garrido, S., Costa, J.L., Teles-Machado, A., Brotas, V., Brito, A.C. (2023). What drives the recruitment of European sardine in Atlanto-Iberian waters (SW Europe)? Insights from a 22-year analysis. Science of the Total Environment, 881, 163421. HYPERLINK "https://doi.org/10.1016/j.scitotenv.2023.163421"https://doi.org/10.1016/j.scitotenv.2023.163421.
  35. Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Pereira, E., Belo, A.F., Portela, T., Telhado, A., & Quintella, B.R. Upstream movement of juvenile eels (Anguilla anguilla L.) in a southwestern European river. Environ Biol Fish 106, 1313–1325. https://doi.org/10.1007/s10641-023-01417-x
  36. França, S. Changes in the Functional Role of the Tejo Estuary (Portugal, Europe) According to Fish Ecological Guilds. Fishes 2023, 8, 545. https://doi.org/10.3390/fishes8110545
  37. João M. Miranda, Guilherme Osswald, Fernando A. Castro, Rui A. Rego, (2023). OpenFOAM validation for indoor ventilation applications, CILAMCE-2023, Proceedings of the XLIV Ibero-Latin-American Congress on Computational Methods in Engineering, ABMEC Porto, Portugal.
  38. Machine learning approach to the background reduction in singly charged cosmic-ray isotope measurements with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA (2023) 168644 10.1016/j.nima.2023.168644
  39. The ATLAS Experiment at the CERN Large Hadron Collider: A Description of the Detector Configuration for Run 3 ATLAS Collaboration (R. Pedro et al.) CERN-EP-2022-259 10.48550/arXiv.2305.16623
  40. Laser Calibration of the ATLAS Tile Calorimeter during LHC Run 2 R. Pedro, B. Pereira et al. JINST 18 (2023) 06, P06023 10.1088/1748-0221/18/06/P06023
  41. Search for pair-production of vector-like quarks in pp collision events at  TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector ATLAS Collaboration (N. Castro, T. Vale et. al ) Phys. Lett. B 843 (2023) 138019 10.1016/j.physletb.2023.138019
  42. Search for single production of vector-like T quarks decaying into Ht or Zt in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro et al.) J. High Energy Phys. 8 (2023) 153 10.1007/JHEP08(2023)153
  43. Search for flavor-changing neutral-current couplings between the top quark and the Z boson with proton-proton collisions at √ s = 13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro, A. Peixoto et al) Phys. Rev. D 108, 032019 10.1103/PhysRevD.108.032019
  44. Anomaly detection search for new resonances decaying into a Higgs boson and a generic new particle X in hadronic final states using s√=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (I. Ochoa et. al. ) Phys. Rev. D 108 (2023) 052009 10.1103/PhysRevD.108.052009
  45. Luminosity determination in pp collisions at s√=13 TeV using the ATLAS detector at the LHC ATLAS Collaboration (R. Pedro et al.) Eur. Phys. J. C 83 (2023) 982 10.1140/epjc/s10052-023-11747-w
  46. Demonstrating Agreement between Radio and Fluorescence Measurements of the Depth of Maximum of Extensive Air Showers at the Pierre Auger Observatory The Pierre Auger Collaboration PRL (sibling of the PRD)
  47. Ground observations of a space laser for the assessment of its in-orbit performance The Pierre Auger Collaboration Optica
  48. Ultra high energy cosmic rays The intersection of the Cosmic and Energy Frontiers A. Coleman et al. (98 authors) Astropart Phys. 147 (2023) 102794 10.1016/j.astropartphys.2023.102819
  49. A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory Pierre Auger Collaboration (379 authors) Astrophysical Journal Supplement 264 (2023) 2, 50 10.3847/1538-4365/aca537
  50. Universality of the muon component of extensive air showers Lorenzo Cazon, Ruben Conceição and Felix Riehn JCAP03(2023)022 10.1088/1475-7516/2023/03/022
  51. Outdoor systems performance and upgrade L. Lopes et al., NIMA 1054, 168446, 2023 10.1016/j.nima.2023.168446
  52. Development of the CMS detector for the CERN LHC Run 3 CMS Collaboration arXiv:2309.05466, accepted for publication in the Journal of Instrumentation.
  53. Sub-25 ps timing measurements with 10 x 10 cm2 PICOSEC Micromegas detectors M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167687 10.1016/j.nima.2022.167687
  54. Towards robust PICOSEC Micromegas precise timing detectors M.Gallinaro et al. JINST 18 (2023) 07, C07018
  55. A large area 100-channel PICOSEC Micromegas detector with time resolution at the 20 ps level M.Gallinaro et al. JINST 18 (2023) 07, C070
  56. Search for top squarks in the four-body decay mode with single lepton final states in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) J. High Energy Phys. 6 (2023) 60 10.1007/JHEP06(2023)060
  57. Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) Phys. Lett. B 842 (2023) 137531 10.1016/j.physletb.2022.137531
  58. Search for high-mass exclusive gammagamma->WW and gammagamma->ZZ production in proton-proton collisions at 13 TeV CMS and TOTEM Collaborations JHEP 07 (2023) 229
  59. Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations JINST 18 (2023) 09, P09009
  60. A next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. (599 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 013001 10.1088/1361-6471/ac841a
  61. Energy resolution of the LZ detector for high-energy electronic recoils G. Pereira et al J. Instrum. 18 (2023) C04007 10.1088/1748-0221/18/04/C04007
  62. The MIGDAL experiment: Measuring a rare atomic process to aid the search for dark matter H. M. Araujo et al. (36 authors) Astropart Phys. 151 (2023) 102853 10.1016/j.astropartphys.2023.102853
  63. First Dark Matter Search Results from the LUX-ZEPLIN (LZ) Experiment J. Aalbers et al. (LUX-ZEPLIN Collaboration) Phys. Rev. Lett. 131 (2023) 041002 10.1103/PhysRevLett.131.041002
  64. Production and optical characterisation of blended Polyethylene Tethraplate (PET)/Polyethylene Naphtalate (PEN) scintillator samples P. Conde Muíño, J. A. Covas, A. Gomes, L. Gurriana, R. Machado, T. Martins, P. Mendes, R. Pedro, B. Pereira, A. J. Pontes, H. Wilkens arXiv:2312.14790
  65. Dual-Polarity Ion Drift Chamber: Experimental results with Xe-S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 10.1016/j.nima.2022.167575
  66. A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 10.1016/j.nima.2022.167603
  67. The new HADES ToF Forward Detector A. Blanco et al., NIMA 1050, 168182, 2023 10.1016/j.nima.2023.168182
  68. Evaluation of effective dose for gamma-rays of Terrestrial Gamma-ray Flashes in aviation: spectral- and atmosphere-effects J.M. Maia, R.M. Curado da Silva, Joana Mingacho Radiation Physics and Chemistry 215 (2024) 111332
  69. First results on FHM - a Floating Hole Multiplier V. Chepel, G.Martinez-Lema, A.Roy, A.Breskin J. Instrum. 18 (2023) P05013 10.1088/1748-0221/18/05/P05013
  70. Timing resistive plate chambers for thermal neutron detection with 3D position sensitivity L. M. S. Margato, G. Canezin, A. Morozov, A. Blanco, J. Saraiva, L. Lopes, P. Fonte L. M.S. Margato et al., Nuclear Instruments and Methods in Physics Research Section A, Volume 1052, July 2023, 168267 10.1016/j.nima.2023.168267
  71. Low-energy physics in neutrino LarTPCs S. Andringa et al. (34 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 033001 10.1088/1361-6471/acad17
  72. Evidence of antineutrinos from distant reactors using pure water at SNO+ SNO+ Collaboration Phys. Rev. Lett. 130, 091801 (2023) 10.1103/PhysRevLett.130.091801
  73. Measurement of the total neutron cross section on argon in the 20 to 70 keV energy range S. Andringa, et al (ARTIE Collaboration) Phys. Rev. C 108, L011601 10.1103/PhysRevC.108.L011601
  74. Heavy Baryon Spectroscopy in a Quark-Diquark Approach A. Torcato, A. Arriaga, G. Eichmann, M. T. Peña Few-Body Sys. 64, 45 (2023) https://doi.org/10.1007/s00601-023-01826-9
  75. Intensity Ratio of Kβ/K$$\alpha$$ in Selected Elements from Mg to Cu, and the Chemical Effects of Cr K$$\alpha$$1,2 Diagram Lines and Cr Kβ/K$$\alpha$$ Intensity Ratio in Cr Compounds Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, T. Shoji, K. Słabkowska, Ł. Syrocki , M. Polasik, J. P. Gomilsek, J. P. Marques, J. M. Sampaio,  M. Guerra, J. Machado, J. P. Santos, A. Hamidani, A. Kahoul, P. Indelicato, and F. Parente Ito, Y.; Tochio, T.; Yamashita, M.; Fukushima, S.; Shoji, T.; Słabkowska, K.; Syrocki, Ł.; Polasik, M.; Gomilsek, J.P.; Marques, J.P.; et al. Intensity Ratio of Kβ/Kα in Selected Elements from Mg to Cu, and the Chemical Effects of Cr Kα1,2 Diagram Lines and Cr Kβ/Kα Intensity Ratio in Cr Compounds. Int. J. Mol. Sci. 2023, 24, 5570. https://doi.org/10.3390/ijms24065570 10.3390/ijms24065570
  76. Diverse mechanisms in proton knockout reactions from the Borromean nucleus 17Ne F. Wamers, C. Lehr, J. Marganiec-Galazka, et al. (62 authors) Eur. Phys. J. A 59, 154 (2023) 10.1140/epja/s10050-023-01063-y
  77. Suppression of Coulomb-nuclear interference in the near-barrier elastic scattering of 17Ne from 208Pb J. Díaz-Ovejas, I. Martel, D. Dell'Aquila, et al. (40 authors) Phys. Lett. B 843 (2023) 138007 10.1016/j.physletb.2023.138007
  78. Opacities of singly and doubly ionized neodymium and uranium for kilonova emission modeling A Flörs, R F Silva, J Deprince, H Carvajal Gallego, G Leck, L J Shingles, G Martínez-Pinedo, J M Sampaio, P Amaro, J P Marques, S Goriely, P Quinet, P Palmeri, M Godefroid Monthly Notices of the Royal Astronomical Society, Volume 524, Issue 2, September 2023, Pages 3083–3101 10.1093/mnras/stad2053
  79. The first PET glimpse of a proton FLASH beam F. Abouzahr, J.P. Cesar, P. Crespo, M.J. Gajda, Z. Hu , W. Kaye, K. Klein, A. Kuo, S. Majewski, O.R. Mawlawi, A. Morozov, A. Ojha, F. Poenisch, J.C. Polf, M. Proga, N. Sahoo, J. Seco, T. Takaoka, S. Tavernier, U. Titt, X. Wang, X.R. Zhu, K. Lang Phys. Med. Biol. 68 (2023) 125001 10.1088/1361-6560/acd29e
  80. Double J /$$\Psi$$ production in pion-nucleon scattering at COMPASS G.D. Alexeev et al. (COMPASS Coll.) Phys. Lett B 838 (2023) 137702 10.1016/j.physletb.2023.137702
  81. Jet substructure observables for jet quenching in Quark Gluon Plasma: a Machine Learning driven analysis Miguel Crispim Romão, José Guilherme Milhano, Marco van Leeuwen e-Print: 2304.07196 [hep-ph]
  82. The Forward Physics Facility at the High-Luminosity LHC J. L. Feng, F. Kling, M. H. Reno, et al. (including G. Chachamis) J.Phys.G 50 (2023) 3, 030501 10.1088/1361-6471/ac865e
  83. Medium-induced radiation with vacuum propagation in the pre-hydrodynamics phase Carlota Andres, Liliana Apolinário, Fabio Dominguez, Marcos Gonzalez Martinez, Carlos A. Salgado JHEP 03 (2023) 189 10.1007/JHEP03(2023)189
  84. Low-pT quarkonium polarization measurements: Challenges and opportunities Pietro Faccioli, Ilse Kraetschmer, Carlos Lourenco Phys. Lett. B 840 (2023) 137871 10.1016/j.physletb.2023.137871
  85. Dilepton decays of vector particles Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 1-37 10.1007/978-3-031-08876-6_1
  86. Particle Polarization in High Energy Physics An Introduction and Case Studies on Vector Particle Production at the LHC Preface Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) IX-XI
  87. Reference frames and transformations Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 39-83 10.1007/978-3-031-08876-6_2
  88. A frame-independent study of the angular distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 85-120 10.1007/978-3-031-08876-6_3
  89. Meaning and interpretation of the frame-independent polarization Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 121-146 10.1007/978-3-031-08876-6_4
  90. Smearing effects in non-planar processes Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 147-172 10.1007/978-3-031-08876-6_5
  91. Polarization in cascade decays Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 173-242 10.1007/978-3-031-08876-6_6
  92. Two-body decay distributions beyond the dilepton case Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 243-281 10.1007/978-3-031-08876-6_7
  93. Alternative parametrization of the dilepton decay distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 283-290
  94. Angular distributions of O -> i>V</igamma, with i>J</i(<iO</i) = J(V>)=1 and V -> l l |pigamma|pipi| ... Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 291-298
  95. Towards a muon collider Carlotta Accettura et al, including G. Chachamis, G. Da Molin, M.Gallinaro Eur.Phys.J.C 83 (2023) 9, 864 10.1140/epjc/s10052-023-11889-x
  96. Low projectile density contributions in the dilute-dense CGC framework for two-particle correlations Anderson Kendi Kohara, Cyrille Marquet, Víctor Vila JHEP 10 (2023) 159 10.1007/JHEP10(2023)159
  97. Field output correction factors of small static field for iba razor nanochamber Dalila Mateus, Carlo Greco and Luis Peralta Biomed. Phys. Eng. Express 10 015004 10.1088/2057-1976/ad0ae0
  98. Radioactivity in a bucket Luis Peralta Eur. J. Phys. 45 (2024) 015801 10.1088/1361-6404/ad0346
  99. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 167652, 2023 10.1016/j.nima.2022.167652
  100. A large-area MRPC detector for muon scattering tomography J. Saraiva et al. NIMA 1050, 168183, 2023 10.1016/j.nima.2023.168183
  101. An RPC-PET brain scanner demonstrator: First results Paulo Fonte et al NIMA 1051, 168236, 2023 10.1016/j.nima.2023.168236
  102. Resistive plate chambers for precise measurement of high-momentum protons in short range correlations at R3B M. Xarepe et al., NIM 1055, 168445, 2023 10.1016/j.nima.2023.168445
  103. Sealed (zero gas flow) resistive plate chambers Alberto Blanco, Paulo Fonte, Luis Lopes, Mario Pimenta Eur. Phys. J. Plus 138, 1021 (2023). 10.1140/epjp/s13360-023-04647-1
  104. Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector J. Saraiva, C. Alemparte, D. Belver, A. Blanco, J. Callon, J. Collazo, A. Iglesias, L. Lopes Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167744 10.1016/j.nima.2022.167744
  105. Observation of collider muon neutrinos with the SND@LHC experiment SND@LHC Colaboration Phys. Rev. Lett. 131, 031802 10.1103/PhysRevLett.131.031802
  106. Exploring parameter spaces with artificial intelligence and machine learning black-box optimization algorithms Fernando Abreu de Souza, Miguel Crispim Romão, Nuno Castro, Mehraveh Nikjoo, Werner Porod Phys. Rev. D 107, 035004 10.1103/PhysRevD.107.035004
  107. Berry: A code for the differentiation of Bloch wavefunctions from DFT calculations Leander Reascos, Fábio Carneiro, André Pereira, Nuno Filipe Castro, Ricardo Mendes Ribeiro Computer Physics Communications 295 (2024) 108972 10.1016/j.cpc.2023.108972
  108. Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa Front. Artif. Intell. 6 (2023) 1268852 10.3389/frai.2023.1268852
  109. Intermediate levels of scientific knowledge are associated with overconfidence and negative attitudes towards science Simone Lackner, Frederico Francisco, Cristina Mendonça, André Mata and Joana Gonçalves-Sá Nat. Hum. Behav. 7 (2023) 1490-+ 10.1038/s41562-023-01677-8
  110. The effects of weather and mobility on respiratory viruses dynamics before and during the COVID-19 pandemic in the USA and Canada Irma Varela-Lasheras, Lília Perfeito, Sara Mesquita and Joana G Sá PLOS Digital Health 10.1371/journal.pdig.0000405
  111. The gamma/hadron discriminator LCm in realistic air shower array experiments R. Conceicao, P. J. Costa, L. Gibilisco, M. Pimenta, B. Tome Eur. Phys. J. C 83 (2023) 932 10.1140/epjc/s10052-023-12106-5

Oral Presentations

  1. COSTA, P.M. (2023). A century of research on environmental carcinogens: From legacy to emerging pollutants. II TOXRUN International Congress. Toxicology Research Unit – CESPU, Porto (Portugal), Abril de 2023.
  2. COSTA, P.M. (2023). Novel tools and old problems: Where do we stand after a century of research into environmental carcinogens? Ciclo de palestras do Doutoramento em Biociências. Universidade de Córdova (Espanha), Janeiro de 2023.
  3. 09/2023 - BeONE project: outcomes and impact. One Health EJP final meeting at the Ministry of Health (Paris, França)
  4. 03/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. OHEJP Dissemination Webinars: New Tools for Surveillance and Risk Assessment
  5. 08/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
  6. 08/2023 - INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
  7. Mendes, Sofia L.; Sousa Santos, Carla; Feulner, Philine G. D.; Sousa, Vitor C. (2023) Contrasting outcomes of hybridization in Iberian chubs revealed through whole genome data. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  8. Blanckaert, A; Sousa, VC (2023) Interactions between mechanisms of reproductive isolation. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  9. Cecília Roque Conference Oral - Nature Inspired Solutions in Health Biotechnology 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  10. Arménio Barbosa Conference Oral - A Molecular Modeling Perspective on the development of Synthetic Affinity ligands 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  11. Cecília Roque Conference Oral - A scalable method to purify reflectins from inclusion bodies 2023-11-08 ISPPP 2023, 5th-8th November 2023, Viena, Austria
  12. Margaria Dias Conference Oral - Reflectin-derived protopeptide: solvent modulation to promote different supramolecular assembly and materials. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  13. Iana Lychko Conference Oral - Characterization of dynamic self-assembly of reflectins 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  14. Gonçalo Teixeira Conference Oral - Odorant-binding proteins based sensors for Volatile Organic Compounds detection. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal Young Investigator Award
  15. Carlos Costa Conference Oral - Portugal Affinity reagents towards SARS-CoV-2. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  16. Cátia Soares Conference Oral - Portugal Dynamic Self-Assembly characterization of reflectins. 2023-06-02 Biophysics Festival, 1st-2nd June 2023, Porto, Portugal
  17. Arménio Barbosa Conference Oral - Multiscale Modeling in Biophysics: Navigating techniques for optimal application, Biophysics Festival 2023, 1st-2nd June 2023, Porto, Portugal
  18. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Centaurium erythraea subsp. Majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus. Mitochondrial DNA Part B, 8(1), 86–90. https://doi.org/10.1080/23802359.2022.2160670
  19. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Glandora prostrata subsp. Lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus. Mitochondrial DNA Part B, 8(2), 270–273. https://doi.org/10.1080/23802359.2023.2175976
  20. Madeira C [presenter & corresponding] et al. (2023) Multilayer molecular networks in fish adaptation to labile environments. EcoSummit 2023 - Building a sustainable and desirable future - adapting to a changing land and seascape, 13th-17th june, Gold Coast, Australia
  21. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Combining Drugs and Polymers for an in situ Prodrug Activation’, 6th Symposium in Medicinal Chemistry (University of Minho, 15th June 2023).
  22. Combination of Biomolecular Simulations with Experimental Studies for More Efficient Drug Discovery, 6th Symposium on Medicinal Chemistry of University of Minho: Drug Discovery in the 21st Century 2023/06/15 – (University of Minho, Portugal), Sérgio F. Sousa
  23. Combining multi-level biomolecular simulations with experimental data for drug discovery 8th PYChemM – Portuguese Young Chemists Meeting, 2023/05/17 – (Vila Real, Portugal) (Invited Keynote), Sérgio F. Sousa
  24. Use of QM/MM Methods in Dissecting the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Conference on Theory and Application of Computational Chemistry, 2023/09/08 (Sapporo, Japan), Sérgio F. Sousa
  25. Development of Biomolecular Simulation Protocols for Protein Recognition by DNA/RNA Sequences, Affinity2023 - 25th Meeting of the International Society of Molecular Recognition, 2023/05/07 (Lisbon, Portugal), Sérgio F. Sousa
  26. Use of DFT in the Study of Enzymatic Reaction Mechanisms, DFT@PT Meeting, 2023/05/25 (Coimbra, Portugal), Sérgio F. Sousa
  27. Application of QM/MM Methods to Understand the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Manchester Multiscale Conference – CCPBioSim, 2023/04/03 – (Manchester, UK), Sérgio F. Sousa
  28. Use of Biomolecular Simulations to Understand and Engineer Aptamer Recognition for Biomedical Applications 9th international Oxford conference on antisense and therapeutic nucleic acids, 2023/03/27 – (Oxford, UK), Sérgio F. Sousa
  29. Application of QM/MM Methods in the Study of the Catalytic Mechanism of Enzymes for Industrial Application, Quitel2023 - Montevideo, Uruguay - November 2023, Sérgio F. Sousa

Proceeding in international conferences

  1. Title:
    • date:
    • Authors:

Posters (internation meetings)

  1. MOUTINHO CABRAL, I., MISSIONÁRIO, M., NUNES, M., MENDONÇA, V., FERNANDES, J., TRAVESSO, M., VINAGRE, C., MADEIRA, D., GROSSO, A.R., COSTA, P.M. & MADEIRA, C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023, Gold Coast (Austrália), Junho de 2023.
  2. MADEIRA, C., MISSIONÁRIO, M., ALMEIDA, C., MOUTINHO CABRAL, I., NUNES, M., FERNANDES, J.F., TRAVESSO, M., ANTÓNIO, C., RODRIGUES, A.M., MENDONÇA, V., VINAGRE, C., GROSSO, A.R., COSTA, P.M., MADEIRA, D. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
  3. GONÇALVES C, MOUTINHO CABRAL I, RODRIGO AP, MADEIRA C, ALVES DE MATOS AP, GROSSO AR & COSTA PM (2023) Uncovering the potential of Cephalopoda and Polychaeta toxins for drug discovery. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
  4. Alpha-synuclein Structural Dynamics from Molecular Dynamics Simulations” at the BioISI Ciências Research and Innovation Week 2023;
  5. “Wild Type and Mutated α-synucleins’ Structure from Coarse-Grained Molecular Dynamics Simulations” at the 2023 Coimbra 3D-Bioinfo-PT;
  6. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vitor. "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Applied Bioinformatics & Public Health Microbiology 2023
  7. Dourado Santos J, Sobral D, Pinheiro M, Isidro J, Bogaardt C, Pinto M, Prada JM, Horton DL, Gomes JP, TELEVIR Consortium, Borges V, INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.Applied Bioinformatics & Public Health Microbiology 2023
  8. Sofia L. Mendes, Carla Sousa Santos, Philine G. D. Feulner, Vitor C. Sousa Multiple outcomes of hybridization in Iberian chubs inferred from whole genome data, 23-27 July 2023, Ferrara, Italy
  9. M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  10. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
  11. Iana Lychko Conference Poster Optimized production of reflectins and characterization of their reversible self-assembly 2023-12-09 PROTEIOS Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  12. Arménio Barbosa Meeting Poster Modeling studies of reflectin de novo peptide assembly 2023-04-05 5th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 4-5th April, 2023, Portugal
  13. Madeira C, Missionário M, Almeida C, Cabral IM, et al. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte, 5th-7th july, Aveiro, Portugal
  14. Cabral IM, Missionário M, Nunes M, […], Madeira C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023 - Building a sustainanble and desirable future: adapting to a changing land and seascape. 13th-17th june, Gold Coast, Australia
    • M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  16. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
  17. 2nd Annual Meeting of CIBIT: "Deciphering emotions in the human brain - a functional MRI exploration of music-induced emotions and their potential applications"; Alexandre Sayal, Inês Bernardino, Teresa Sousa, Miguel Castelo-Branco, Bruno Direito (2023)

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

  1. Dr. Gonçalo Teixeira, “Olfaction inspired sensing using tailor-made proteins” , MIT Portugal Program of Bioengineering Systems, FCT NOVA, December 2023.
  2. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.
  3. Rational development of new biocatalysts for the production of Parkinson Disease drugs Student: Juliana Rocha Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: July 25 2023
  4. IST Miguel Orcinha Study of solar modulation effects on cosmic ray fluxes measured by the AMS experiment
  5. ATLAS, Pheno UC Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment
  6. UC Alexandre Fonseca Trindade Study of noble gases mixtures characteristics as a detection medium
  7. DarkMatter UC Guilherme Pereira Data processing and Human Machine Interface for the monitoring and control system of LZ dark matter experiment
  8. FCUL Elisabet Galiana Analysis and simulation of (p,g) and PIGE low energy reactions: An ENSARRoot developmen
  9. IST Diogo de Bastos Search for the supersymmetric stop quark in the CMS experiment
  10. FCUL Dalila Mateus Estudos dosimétricos para SBRT/SRT de pequenas lesões do Cérebro
  11. IST Ana Luísa Carvalho Study of the CP properties of the Higgs coupling to top quarks with ATLAS at the LHC.

Ongoing

  1. Jorge Filipe Marques Gadelho
    • Título: Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OpenFOAM
    • Universidade: Instituto Superior Técnico - Universidade de Lisboa Cabral, C. (ongoing). Assessment of impacts of marine non-indigenous species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  2. Carvalho, F. (ongoing). Changes in Ecosystem Services with the introduction of marine invasive species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  3. Afonso, I. (ongoing). Fouling marine non indigenous species at different biogeographical levels. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  4. Goulding, T. (ongoing). The Portuguese clam fishery: Future impact of Hybrids and Ocean Acidification to coastal communities. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  5. Pereira, E. (ongoing). Dinâmica da migração catádroma do muge (Liza ramada Risso, 1827) e sua importância para os ecossistemas fluviais. Doutoramento em Biologia, Universidade de Évora
  6. Belo, A.F. (ongoing). Contribuição para o conhecimento da biologia e ecologia do sável em Portugal: impacto do restauro fluvial e da gestão participada na sua conservação. Doutoramento em Biologia, Universidade de Évora.
  7. Silva, A.F. (ongoing). Avaliação da adequabilidade do desenho e dimensionamento de uma Área Marinha Protegida com vista à gestão de recursos pesqueiros. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  8. Monteiro, R. (ongoing). Assessment of anthropogenic impacts on the European Eel in Portugal. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa
  9. Marques, J.P. (ongoing). Migrações da corvina-legítima: importância do estuário do Tejo como área de viveiro e de reprodução. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  10. Silva, S. (ongoing). Estudo das populações de truta (Salmo trutta L.) no limite sul de distribuição: implicações para a sua gestão e conservação. Doutoramento em Biologia, Universidade de Évora.
  11. Rato, A. (ongoing). Gestão e conservação das espécies potamódromas: dinâmica de movimentos, fidelidade espacial e migrações parciais. Doutoramento em Biologia, Universidade de Évora.
  12. Almeida, A.R. (ongoing). FRESHseaBASS - Divergent sea bass freshwater incursions. Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa. 1. Pedro R. Figueiredo. ‘Enzymatic Synthesis of Biodegradable Amphiphilic Polymer-drugs for Cancer Treatment.’
  13. Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex Student: André Pina Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: January15th 2024 1. Development of biocidal formulations for effective biofouling control Student: Susana Maria da Fonseca Fernandes (Supervisor Principal: Manuel Simões; Outros Supervisores: Fernanda Borges) Programa Doutoral em Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal 2019 – 2023 Defense: Feb9th 2024
  14. Ana Sofia Carvalho, FCT (PD/BD/135550/2018) Immune profiling of advanced-stage HER2+ breast cancer by scRNA-seq.

Master Thesis

Finished

  1. João Pedro Correia Mourão Miranda (2023) Simulação Numérica de Ventilação Instacionária em Espaços Interiores, ISEP.
  2. RODRIGO DE JESUS EUSÉBIO "Re-implementation of a data analysis pipeline for the genetic characterization of viral pathogens in the context of laboratory surveillance of viral outbreaks" Sep, 2023 Nova Medical School
  3. Marta Ferreira (2023) Genomics of adaptation to cadmium on a spatially heterogeneous environment. MSc Biologia Evolutiva e do Desenvolvimento. Faculdade de Ciências da Universidade de Lisboa.
    • Mestrado em Bioinformática - Universidade do Minho;
      • Aluna: Catarina Gomes Ferreira;
      • Orientadores: Isabel Duarte (UAlg) e Miguel Rocha (UMinho).
      • MitoProfiles: Cancer mitochondrial profiles in high metabolic rate organs"
  5. Jorge Fernando Pereira Sinval: Beyond the Accuracy of Clinical Reasoning: The Development of a New Instrument. Msc Faculdade de Medicina de Lisboa
  6. Ribeiro, A.R. 2022. Estudo da dinâmica de movimentos e comportamento migratório dos ecótipos anádromo e holobiótico de truta (Salmo trutta L.) no rio Mondego., Mestrado em Ecologia e Gestão Ambiental, Faculdade de Ciências, Universidade de Lisboa.78pp HYPERLINK "http://hdl.handle.net/10451/56922"http://hdl.handle.net/10451/56922
  7. Development of computational approaches for the identification of bioactive molecules present in databases of cyanobacterial compounds for therapeutic approaches in human diseases Student: Renato Soares (Main Supervisor: Dr. João Carneiro, CIIMAR; Other Supervisors: Diogo Pratas, Univ Aveiro) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Defense: July 24th 2023
  8. Molecular Modelling of Natural Compounds Extracted from Plants as New Insecticide Agents Student: Maria Araújo Mestrado: Biofísica e Bionanosistemas Universidade do Minho, Portugal 2019/2022 Defense: April 23rd 2023
  9. Understanding the Molecular Basis Behind Congenital Disorders of Glycosylation Student: Tiago André Cunha Oliveira Mestrado: Biochemistry of Health Escola Superior de Saúde, Instituto Politécnico do Porto, Portugal 2023 Defense: November22nd 2023
  10. Uminho Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider
  11. FCUL João Afonso Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework. http://hdl.handle.net/10451/56730
  12. UC Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC
  13. UC João Humberto Gomes Deep Learning in QCD Jets
  14. UC Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0?2β decay of Xe-136
  15. FCUL Catarina Pereira Performance of the TileCal High Voltage Upgrade System
  16. FCUL Rui Fernandes Marques Controlo Digital e Nova Electrónica para o Banco de Testes para o Sistema de Alta Tensão dos Fotomultiplicadores do Tilecal
  17. FCTUC António Sampaio Optimization of a device for deep-brain transcranial magnetic stimulation via simulations
  18. FCUL Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT
  19. IST Henrique Legoinha Probing the Quark Gluon Plasma with B0s and B+ Mesons: Cross Sections in pp and Nuclear Modification Factors in PbPb Collisions https://cds.cern.ch/record/2860807/
  20. FCUL Tomás Almeida Design of a phantom for radiobiology studies
  21. Uminho Pedro Chaves Probing Dark Matter with Higgs Bosons and Top Quarks
  22. FCUL Lia Pereira The effects of radiation on amyloids and cells experimentally and modeled using the TOPAS framework http://hdl.handle.net/10451/59369
  23. UBI Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
  24. FCUL João Pedro Pires Deep Neural Netwoers in Experimental Data Analyses
    1. FCUL Tomás Correia Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR http://hdl.handle.net/10451/59068
  26. IST Pedro Canatário Duarte The diffusion of information in social media – How much complexity do we need?
  27. IST Lénea Luís Deciphering jet quenching effects through a quantile ratio
  28. UC Pedro Póvoa Combining HPC and Low-Power Systems for Data-Intensive-Acquisition Sensors in Space Missions
  29. UC Francisco Santos Procura de fugas em redes de água
  30. UC João Parente Development of Machine Learning Tools for the extraction of behavioral and physiological parameters of birds in their natural environment
  31. UC Francisco Casalinho Probing the vaccum with di-Higgs production
  32. UC Jorge Francisco Silva Transmission muon tomography using ultra-low gas consumption RPC technology
  33. UC António Caramelo High Granularity Timing Detector’s Patch Panel Filter Testing
  34. FCTUC Giorgio Canezin A nRPC-4D neutron Detector Concept with Timing and Tridimensional Position Readout Capability
  35. UC António Carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans
  36. UC José Sousa Development of a High-Energy Astrophysics Tracker for the Space Rider Orbital Maiden Flight
  37. IST António Pessanha Gomes Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury
  38. IST Simão Costa Probing quark hadronization with B mesons at the LHC http://cds.cern.ch/record/2883330?ln=en
  39. IST Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
  40. Uminho Magda Duarte Development of high-resolution, three-dimensional muographies
  41. IST Guilherme Rita de Almeida Acceleration of track reconstruction algorithms using GPUs
  42. IST Marco Leitão "QGP effects on Energy Correlators inside jets"
  43. IST Milton Freitas Measurement of the number of muons in high occupancy MARTA stations
  44. FCUL Edgar Sousa Study of dosimetry techniques applied to electron beams with high dose rate
  45. ISEL Maria João Borges Beam tests of a scintillation array detector for high-resolution dosimetry
  46. FCUL Ana Campos Estudo da dispersão de partículas alfa em filmes finos
  47. FCUL Nuno Taborda Construção de um protótipo para o estudo da exalação de radão por materiais de construção
  48. FCUL Fábio do Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro
  49. UC Maria Miguel Interlock electronics for the high Granularity Timing Detector od the ATLAS

Ongoing

  1. 2023-present (main supervisor). David Lohmann – MSc in Computational Biology and Bioinformatics thesis: “Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios”. NOVA School of Science and Technology, Portugal
  2. 2023-present (co-supervisor). Raquel Maricato - MSc in Computational Biology and Bioinformatics thesis: “Evolution of the minimal stress proteome in marine fauna: potential for adaptation to climate change”. NOVA School of Science and Technology, Portugal.
  3. 2023-present (co-supervisor). João Lopes – MSc in Computational Biology and Bioinformatics thesis: “Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats”. NOVA School of Science and Technology, Portugal.

Patents

Datasets

  1. Martins, C., Carvalho, L.M., Moutinho Cabral, I., Saúde, L., Dreij, K., Costa, P.M. A mechanistic study on the interaction effects between legacy and pollutants of emerging concern: A case study with B[a]P and diclofenac. Accession number GSE232729 (under publication embargo)
  2. Gonçalves, C., Moutinho Cabral, I., Grosso, A.R, Costa, P.M. Transcriptome profiling of the posterior salivary gland of the cuttlefish Sepia officinalis. Accession number GSE251667 (under publication embargo)
  3. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 3,076 Campylobacter jejuni isolates. https://zenodo.org/record/7230105#.Y-ftJi0qJQI.
  4. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,999 Escherichia coli isolates. https://zenodo.org/record/7230102#.Y-fuTi0qJQI.
  5. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, Joao Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective cgMLST profiles of a diverse dataset comprising 1,874 Listeria monocytogenes isolates. https://zenodo.org/record/7230003#.Y-fvCC0qJQI.
  6. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,434 Salmonella enterica isolates. https://zenodo.org/record/7230091#.Y-fvrC0qJQI
  7. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vítor. Multiple Sequence Alignment of a diverse dataset with 1788 Mycobacterium tuberculosis isolates. https://zenodo.org/doi/10.5281/zenodo.7772651

Software Cientifico

  1. MitoCarta, depositado no GitHub (https://github.com/MitoProfiles/MitoCarta)
  2. Validation and benchmarking of ReporTree (a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data) https://github.com/insapathogenomics/ReporTree
  3. Development of INSaFLU TELE-VIR platform https://github.com/INSaFLU/INSaFLU
  4. Development of INSaFLU Snakemake https://github.com/INSaFLU/insaflu_snakemake
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