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2023

International articles with referee

  1. Teodoro, M. C., Conceição, E. M., Sinval, J., de Lourdes, M., & Neufeld, C. B. (2023). Adaptation, confirmatory factor analysis, and psychometric properties of the Brazilian version of the Repetitive Eating Questionnaire. International Journal of Eating Disorders. https://doi.org/10.1002/eat.23943
  2. Mixão, V., Pinto, M., Sobral, D. et al. ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Genome Med 15, 43 (2023). https://doi.org/10.1186/s13073-023-01196-1
  3. João Dourado Santos, Daniel Sobral, Miguel Pinheiro et al. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance, 07 November 2023, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-3556988/v1]
  4. Carvalho J., Faria R., Butlin R.K., Sousa V.C. (2023) poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14185
  5. Carvalho J., Morales H., Faria R., Butlin R.K., Sousa V.C. (2023) Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13834
  6. Casanova, J., Sinval, J., & Almeida, L. (2024). Éxito académico, compromiso y autoeficacia de los estudiantes universitarios de primer año: variables personales y desempeño del primer semestre. Anales de Psicología / Annals of Psychology, 40(1), 44–53. https://doi.org/10.6018/analesps.479151
  7. F.J.A.L. Cruz and J.P.B. Mota, "Partial Denaturation of Double-Stranded DNA on Pristine Graphene under Physiological-like Conditions", Liquids 2023, 3, 168.
  8. F.J.A.L. Cruz and J.P.B. Mota, “Structure and Thermodynamics of Empty Clathrate Hydrates bellow the Freezing Point of H2O”, 14th Int. Chem. Bio. Eng. Conference, Bragança, Portugal, September 2023.
  9. Wang, S., Islam, H., Abdelwahab, H.S., Guedes Soares, C., 2024. Uncertainty analysis of CFD solver for predicting ship responses in head waves, in preparation.
  10. Gomes I., Galamba N., Protein Stability in a Natural Deep Eutectic Solvent: Preferential Hydration or Solvent Slaving?, J. Chem. Phys., 159, 235101, 2023 (URL: https://doi.org/10.1063/5.0177095)
  11. Neto V., Victor BL. , Galamba N., Cyclic Peptides as Aggregation Inhibitors for Sickle Cell Disease, J. Med. Chem., 66, 23, 16062–16074, 2023 (URL: https://doi.org/10.1021/acs.jmedchem.3c01484)
  12. Martins, G., Nascimento, C., Galamba, N., Mechanistic Insights into Polyphenols’ Aggregation Inhibition of α-Synuclein and Related Peptides, ACS, Chem. Neurosci., 14, 10, 1905–1920, 2023 (URL: https://doi.org/10.1021/acschemneuro.3c00162)
  13. Monteiro, H., Paiva, A., Duarte, R.C., Galamba, N., On the not so anomalous water-induced structural transformations of choline chloride–urea (reline) deep eutectic system, Physical Chemistry Chemical Physics 25 (1), 439-454, 2023 (URL: https://doi.org/10.1039/D2CP04139A)
  14. Dias, A. M. G. C., Moreira, I. P., Lychko, I., Soares, C. L., Nurrito, A., Barbosa, A. J. M., Lutz-Bueno, V., Mezzenga, R., Carvalho, A. L., Pina, A. S. & Roque, A. C. A. (2023). Hierarchical self-assembly of a reflectin-derived peptide. Front. Chem., 11.
  15. Almeida, J., Palma, C., Félix, P.M., Brito, A.C. (2023). Long-term variation of dissolved metals and metalloid in the waters of an Atlantic mesotidal estuary (Sado Estuary, Portugal). Marine Pollution Bulletin, 188, 114615. HYPERLINK "https://doi.org/10.1016/j.marpolbul.2023.114615"https://doi.org/10.1016/j.marpolbul.2023.114615
  16. Brito, A.C., Pereira, H., Picado, A., Cruz, J., Cereja, R., Biguino, B., Chainho, P., Nascimento, A., Carvalho, F., Cabral, S., Santos, C., Palma, C., Borges, C:, Dias, J.M. (2023). Increased oyster aquaculture in the Sado Estuary: how to ensure ecosystem sustainability? Science of the Total Environment, 855, 158898.
  17. Favareto, L., Brotas, V., Rudorff, N., Zacarias, N., Tracana, A., Lamas, L., Nascimento, A., Ferreira, A., Gomes, M., Borges, C., Palma, C., Brito, A.C. (2023). Response of phytoplankton to coastal upwelling: the importance of temporal and spatial scales. Limnology and Oceanography, 68, 1376-1387. https://doi.org/10.1002/lno.12353
  18. Ferreira, A., Garrido, S., Costa, J.L., Teles-Machado, A., Brotas, V., Brito, A.C. (2023). What drives the recruitment of European sardine in Atlanto-Iberian waters (SW Europe)? Insights from a 22-year analysis. Science of the Total Environment, 881, 163421. HYPERLINK "https://doi.org/10.1016/j.scitotenv.2023.163421"https://doi.org/10.1016/j.scitotenv.2023.163421.
  19. Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Pereira, E., Belo, A.F., Portela, T., Telhado, A., & Quintella, B.R. Upstream movement of juvenile eels (Anguilla anguilla L.) in a southwestern European river. Environ Biol Fish 106, 1313–1325. https://doi.org/10.1007/s10641-023-01417-x
  20. França, S. Changes in the Functional Role of the Tejo Estuary (Portugal, Europe) According to Fish Ecological Guilds. Fishes 2023, 8, 545. https://doi.org/10.3390/fishes8110545

Oral Presentations

  1. Mendes, Sofia L.; Sousa Santos, Carla; Feulner, Philine G. D.; Sousa, Vitor C. (2023) Contrasting outcomes of hybridization in Iberian chubs revealed through whole genome data. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  2. Blanckaert, A; Sousa, VC (2023) Interactions between mechanisms of reproductive isolation. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  3. Cecília Roque Conference Oral - Nature Inspired Solutions in Health Biotechnology 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  4. Arménio Barbosa Conference Oral - A Molecular Modeling Perspective on the development of Synthetic Affinity ligands 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  5. Cecília Roque Conference Oral - A scalable method to purify reflectins from inclusion bodies 2023-11-08 ISPPP 2023, 5th-8th November 2023, Viena, Austria
  6. Margaria Dias Conference Oral - Reflectin-derived protopeptide: solvent modulation to promote different supramolecular assembly and materials. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  7. Iana Lychko Conference Oral - Characterization of dynamic self-assembly of reflectins 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  8. Gonçalo Teixeira Conference Oral - Odorant-binding proteins based sensors for Volatile Organic Compounds detection. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal Young Investigator Award
  9. Carlos Costa Conference Oral - Portugal Affinity reagents towards SARS-CoV-2. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  10. Cátia Soares Conference Oral - Portugal Dynamic Self-Assembly characterization of reflectins. 2023-06-02 Biophysics Festival, 1st-2nd June 2023, Porto, Portugal
  11. Arménio Barbosa Conference Oral - Multiscale Modeling in Biophysics: Navigating techniques for optimal application, Biophysics Festival 2023, 1st-2nd June 2023, Porto, Portugal
  12. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Centaurium erythraea subsp. Majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus. Mitochondrial DNA Part B, 8(1), 86–90. https://doi.org/10.1080/23802359.2022.2160670
  13. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Glandora prostrata subsp. Lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus. Mitochondrial DNA Part B, 8(2), 270–273. https://doi.org/10.1080/23802359.2023.2175976
  14. Madeira C [presenter & corresponding] et al. (2023) Multilayer molecular networks in fish adaptation to labile environments. EcoSummit 2023 - Building a sustainable and desirable future - adapting to a changing land and seascape, 13th-17th june, Gold Coast, Australia

Proceeding in international conferences

  1. Title:
    • date:
    • Authors:

Posters (internation meetings)

  1. Sofia L. Mendes, Carla Sousa Santos, Philine G. D. Feulner, Vitor C. Sousa Multiple outcomes of hybridization in Iberian chubs inferred from whole genome data, 23-27 July 2023, Ferrara, Italy
  2. M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  3. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
  4. Iana Lychko Conference Poster Optimized production of reflectins and characterization of their reversible self-assembly 2023-12-09 PROTEIOS Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  5. Arménio Barbosa Meeting Poster Modeling studies of reflectin de novo peptide assembly 2023-04-05 5th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 4-5th April, 2023, Portugal
  6. Madeira C, Missionário M, Almeida C, Cabral IM, et al. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte, 5th-7th july, Aveiro, Portugal
  7. Cabral IM, Missionário M, Nunes M, […], Madeira C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023 - Building a sustainanble and desirable future: adapting to a changing land and seascape. 13th-17th june, Gold Coast, Australia
    • M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  9. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

  1. Dr. Gonçalo Teixeira, “Olfaction inspired sensing using tailor-made proteins” , MIT Portugal Program of Bioengineering Systems, FCT NOVA, December 2023.
  2. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.

Ongoing

  1. Jorge Filipe Marques Gadelho
    • Título: Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OpenFOAM
    • Universidade: Instituto Superior Técnico - Universidade de Lisboa Cabral, C. (ongoing). Assessment of impacts of marine non-indigenous species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  2. Carvalho, F. (ongoing). Changes in Ecosystem Services with the introduction of marine invasive species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  3. Afonso, I. (ongoing). Fouling marine non indigenous species at different biogeographical levels. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.  Goulding, T. (ongoing). The Portuguese clam fishery: Future impact of Hybrids and Ocean Acidification to coastal communities. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  4. Pereira, E. (ongoing). Dinâmica da migração catádroma do muge (Liza ramada Risso, 1827) e sua importância para os ecossistemas fluviais. Doutoramento em Biologia, Universidade de Évora
  5. Belo, A.F. (ongoing). Contribuição para o conhecimento da biologia e ecologia do sável em Portugal: impacto do restauro fluvial e da gestão participada na sua conservação. Doutoramento em Biologia, Universidade de Évora.
  6. Silva, A.F. (ongoing). Avaliação da adequabilidade do desenho e dimensionamento de uma Área Marinha Protegida com vista à gestão de recursos pesqueiros. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  7. Monteiro, R. (ongoing). Assessment of anthropogenic impacts on the European Eel in Portugal. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa
  8. Marques, J.P. (ongoing). Migrações da corvina-legítima: importância do estuário do Tejo como área de viveiro e de reprodução. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  9. Silva, S. (ongoing). Estudo das populações de truta (Salmo trutta L.) no limite sul de distribuição: implicações para a sua gestão e conservação. Doutoramento em Biologia, Universidade de Évora.
  10. Rato, A. (ongoing). Gestão e conservação das espécies potamódromas: dinâmica de movimentos, fidelidade espacial e migrações parciais. Doutoramento em Biologia, Universidade de Évora.
  11. Almeida, A.R. (ongoing). FRESHseaBASS - Divergent sea bass freshwater incursions. Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa.

Master Thesis

Finished

  1. RODRIGO DE JESUS EUSÉBIO "Re-implementation of a data analysis pipeline for the genetic characterization of viral pathogens in the context of laboratory surveillance of viral outbreaks" Sep, 2023 Nova Medical School
  2. Marta Ferreira (2023) Genomics of adaptation to cadmium on a spatially heterogeneous environment. MSc Biologia Evolutiva e do Desenvolvimento. Faculdade de Ciências da Universidade de Lisboa.
    • Mestrado em Bioinformática - Universidade do Minho;
      • Aluna: Catarina Gomes Ferreira;
      • Orientadores: Isabel Duarte (UAlg) e Miguel Rocha (UMinho).
      • MitoProfiles: Cancer mitochondrial profiles in high metabolic rate organs"
  4. Jorge Fernando Pereira Sinval: Beyond the Accuracy of Clinical Reasoning: The Development of a New Instrument. Msc Faculdade de Medicina de Lisboa
  5. Ribeiro, A.R. 2022. Estudo da dinâmica de movimentos e comportamento migratório dos ecótipos anádromo e holobiótico de truta (Salmo trutta L.) no rio Mondego., Mestrado em Ecologia e Gestão Ambiental, Faculdade de Ciências, Universidade de Lisboa.78pp HYPERLINK "http://hdl.handle.net/10451/56922"http://hdl.handle.net/10451/56922

Ongoing

  1. 2023-present (main supervisor). David Lohmann – MSc in Computational Biology and Bioinformatics thesis: “Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios”. NOVA School of Science and Technology, Portugal
  2. 2023-present (co-supervisor). Raquel Maricato - MSc in Computational Biology and Bioinformatics thesis: “Evolution of the minimal stress proteome in marine fauna: potential for adaptation to climate change”. NOVA School of Science and Technology, Portugal.
  3. 2023-present (co-supervisor). João Lopes – MSc in Computational Biology and Bioinformatics thesis: “Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats”. NOVA School of Science and Technology, Portugal.

Patents

Datasets

Software Cientifico

  1. MitoCarta, depositado no GitHub (https://github.com/MitoProfiles/MitoCarta)
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