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2020

Journal Paper with direct contribution

  • jorge Sinval et all. "Development of the Referee Shared Mental Models Measure (RSMMM)"Front. Psychol., 19 October 2020 | https://doi.org/10.3389/fpsyg.2020.550271
  • jorge Sinval et all. "Measurement Invariance of the Burnout Assessment Tool (BAT) Across Seven C", Int. J. Environ. Res. Public Health 2020, 17(15), 5604; https://doi.org/10.3390/ijerph17155604 - 03 Aug 2020
  • Joao Maroco et all. "Validation of the Portuguese version of the Community Assessment of Psychic Experiences and characterization of psychotic experiences in a Brazilian sample"Braz J Psychiatry. 2020 xxx-xxx;00(00):000-000 doi:10.1590/1516-4446-2019-0611
  • Sílvia Monteiro, Leandro Almeida, Cristiano Gomes & Jorge Sinval (2020): Employability profiles of higher education graduates: a person-oriented approach, Studies in Higher Education, DOI: 10.1080/03075079.2020.1761785
  • Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  • RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  • RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  • Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  • Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.
  • A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.
  • Orue-Echevarría, D., Castellanos, P., Sans, J., Emelianov, M., Vallés-Casanova, I., and Pelegrí, J. L. 2019. Temperature spatio-temporal correlation scales in the Brazil Malvinas Confluence from high-resolution in-situ and remote sensing data. Geophysical Research Letter. https://doi.org/10.1029/2019GL084246
  • Cabral, S., Carvalho, F., Gaspar, M., Ramajal, J., Sá, E., Santos, C., Silva, G., Sousa, A., Costa, J.L., Chainho, P. 2019. Non-indigenous species in soft-sediments: Are some estuaries more invaded than others? Ecological Indicators. In press. https://doi.org/10.1016/j.ecolind.2019.105640
  • Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
  • Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
  • Brito, A.C., Garrido-Amador, P., Gameiro, C., Nogueira, M., Moita, M.T., Cabrita, M.T. (2020). Integrating in situ and ocean color data to evaluate ecological quality under the Water Framework Directive. Water, 12, 3443.
  • Ferreira, A., Brotas, V., Palma, C., Borges, C., Brito, A.C. (in review). Assessing phytoplankton bloom phenology in upwelling-influenced regions using ocean colour remote sensing. Remote Sensing
  • Sent, G., Biguino, B., Favareto, L., Cruz, J., Sá, C., Dogliotti, A., Brotas, V., Brito, A.C. (in review). Deriving water quality parameters using Sentinel-2 imagery: A case study in the Sado estuary, Portugal. Remote Sensing.
  • Sroczyńska, K., A. Conde, P. Chainho & H. Adão (2021). How nematode morphometric attributes integrate with taxonomy-based measures along an estuarine gradient. Ecological Indicators 124: 107384. https://doi.org/10.1016/j.ecolind.2021.107384
  • Afonso, I., E. Berecibar, N. Castro, J.L. Costa, P. Frias, P. Moreira, P. Oliveira, F. Henriques, G. Silva & P. Chainho. (2020). Assessment of the colonization and dispersal success of non-indigenous species introduced in recreational marinas. Ecological Indicators 113: 106147. https://doi.org/10.1016/j.ecolind.2020.106147
  • Vieira, S., P. Barrulas , P. Chainho C. Dias, K. Sroczyńska & H. Adão (accepted). Multi-element composition as a tool for spatial and temporal habitat discrimination of the non-indigenous clam Ruditapes philippinarum (Adam & Reeve, 1850) populations. Ecological Indicators.
  • Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Alexandre, C.M., Quintella, B.R. 2020. Migration and escapement of silver eel males, Anguilla anguilla, from a southwestern European river. Ecology of Freshwater Fish, 29: 679-692. https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12545
  • Rato, A.S., Alexandre, C.M., Almeida, P.R., Costa, J.L., Quintella, B.R. 2021. Effects of hydropeaking on the behaviour, fine-scale movements and habitat selection of an Iberian cyprinid fish. River Research and Applications
  • Santis, W., Castellanos, P., Campos, E. J. D. 2020. Memory effect within the Southern Atlantic Subtropical Dipole variability. Journal of Climate. Vol 33, nº 17. 7679-7696. DOI: 10.1175/JCLI-D-19-0745.1
  • Orue-Echevarría, D., Pelegrí, J. L., Castellanos, P., Guallar, C., Marotta, H., Marrasé., Martín, J., Masdeu-Navarro, M., Paniagua, G.F., Peña Izquierdo, J., Puigdefábregas, J., Rodríguez-Fonseca, B., Roget, E., Rosell-Fieschi, M., Salat, J., Salvador, J., Vallés-Casanova, I., Vidal, M., Viúdez, A. 2020. Dataset on the RETRO-BMC cruise onboard the R/V Hespérides, April 2017, Brazil-Malvinas Confluence. Data in Brief Vol.30,105412. https://doi.org/10.1016/j.dib.2020.105412
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.101504
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.103.024020
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.124009
  • https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0239816
  • https://www.frontiersin.org/articles/10.3389/fpsyg.2019.02796/full#fun1
  • Pereira, C., Maranha, J. R. e Cardoso R. (2020). DEM analysis of some effects due to capillary forces in sands. E-Unsat 2020, Lisbon.
  • Rodrigues M, Martins R, Rogeiro J, Fortunato AB, Oliveira A, Cravo A, Jacob J, Rosa A, Azevedo A, Freire P. 2021 (in press). A web-based observatory for biogeochemical assessment in coastal regions, Journal of Environmental Informatics.
  • Rodrigues, M., A. Rosa, A. Cravo, Jacob, J., Fortunato, A.B. 2021 (in press). Effects of Climate Change and anthropogenic pressures in the water quality of a coastal lagoon (RIa Formosa, Portugal), Science of the Total Environment.
  • Maria Adriana Cardoso, Maria Céu Almeida, Rita S. Brito, João L. Gomes, Paula Beceiro, Anabela Oliveira (2020). 1D/2D stormwater modelling to support urban flood risk management in estuarine areas: Hazard assessment in the Dafundo case study. Journal of Flood Risk Management, https://doi.org/10.1111/jfr3.12663, 13(3).
  • Oliveira A, Fortunato AB, Rogeiro J., Teixeira J, Azevedo A, Lavaud L, Bertin A, Gomes J, David M, Pina J, Rodrigues M, Lopes P, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, 2020, Environmental Modelling & Software, 124, 104585
  • F.J.A.L. Cruz and J.P.B. Mota, "Equilibrium and Transport Distributions of a DNA Dodecamer in Hydrophilic Nanopores", Materials Today: Proceedings 2020, 20, 249.
  • P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2019). “RESCCUE RAF app – an IT solution for digital interactive urban resilience assessment”, 10th Iberian Grid Conference (IBERGRID), 23rd September 2019, Santiago de Compostela, Spain.
  • P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2020). “RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts” submitted to MIPRO 2020 – International Convention on Information, Communication and Electronic Technology, 28th September – 2nd October, Opatija, Croatia.

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

  • PD/BD/137492/2018
  • SFRH/BD/148542/2019
  • Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  • João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  • PhD thesis de Guilherme Espada (LASIGE/FCUL)
  • PhD thesis de Paulo Santos (LASIGE/FCUL)
  • Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018
  • Biology and ecology of allis shad in Portugal: contributions of fluvial restoration and participated management to its conservation. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/123434/2016)
  • Catadromous migration of the Thinlip grey mullet (Liza ramada Risso, 1827) and its importance to fluvial ecosystems. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/121042/2016)
  • Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. MSc Thesis in Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências
  • Water quality indexes for Estuarine Waters: assessment of temporal and spatial variability. PhD Thesis, Universidade de Lisboa (EARTHSYSTEMS FCT – Programa Doutoral – PD/BD/135064/2017)
  • Evaluating the design and size adequacy of a Marine Protected Area to promote small-scale artisanal fisheries management. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (Bolsa FCT referência SFRH/BD/131868/2017)
  • Assessment of anthropogenic impacts on the European Eel in Portugal. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (EARTHSYSTEMS FCT – Programa Doutoral - PD/143/2012)
  • Phytoplankton response to climate change on the North Atlantic and Southern Ocean. PhD Thesis. Universidade de Lisboa. (FCT- SFRH/BD/144586/2019)
  • Phytoplankton community in the Algarve coastal region: implications to aquaculture production. MSc Thesis in Ciências do Mar. Universidade de Lisboa
  • Bio-optical properties of Portuguese coastal waters with emphasis on the detection of Functional Types of Phytoplankton. PhD Thesis, Universidade de Lisboa (Bolsa CNPq referência 200589/2019-9)
  • Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.
  • Bayesian approach to Ecological Monitoring data: Latent Growth Curve Models. Mestrado em Bioestatística, Universidade de Lisboa, Faculdade de Ciências.
  • Pereira, C. (2020). Formulation of an advanced effective stress based constitutive model for unsaturated soils. PhD Thesis, IST, Lisbon,
  • Mendes, D. (2020). Modelling infra-gravity waves in coastal areas, Tese de Doutoramento em Engenharia Civil, IST.

Master Thesis

  • Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
  • Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
  • Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • "A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)
  • MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.
  • Santos, C. 2019. Estado atual das populações de berbigão (Cerastoderma spp) no estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências. 64 pp.
  • Ferreira, M. 2019. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 45 pp.
  • Rita Afonso Population genomics of the endangered seabird Bermuda Petrel (Pterodroma cahow). Mestrado em Biologia Evolutiva e do Desenvolvimento, Faculdade de Ciências, Universidade de Lisboa

Conference Paper

  • "A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020
  • Anabela Oliveira, Alberto Azevedo, André B. Fortunato, Marta Rodrigues, João Rogeiro, Pedro Lopes, Samuel Bernardo, Jorge Gomes, João Pina, Mario David, 2021 (in press). OPENCoastS: a tailored coastal forecasting WebGIS service, Proceedings of the 3rd Conference of the Arabian Journal of Geosciences, 4 pp.
  • P. Lopes; A. Oliveira; C. Pereira; R. S. Brito; M. A. Cardoso; R. Martins; M. David; J. Gomes; J. Pina et al., "RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts," 2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO), Opatija, Croatia, 2020, pp. 1651-1655, doi: 10.23919/MIPRO48935.2020.9245231.
  • CAMPUZANO F., SOBRINHO J., RODRIGUES M., NUNES S., CASTELLANOS P., ALMADA F., FERNANDES C.S., PASCOAL A., NEVES R., OLIVEIRA A., OLIVEIRA A., BROTAS V. (2020). Desenvolvimento dum observatório costeiro para a Área Metropolitana de Lisboa. 6as Jornadas de Engenharia Hidrográfica/1as Jornadas Luso-Espanholas de Hidrografia, 408-411

Conference Poster

  • RODRIGUES M., MARTINS R., ROGEIRO J., OLIVEIRA A., FORTUNATO A.B., AZEVEDO A., FREIRE P., CRAVO A., JACOB J., ROSA A. (2020). The UBEST observatory: an innovative HPC-based portal for water quality management in coastal regions. EOSC week 2020, 1pp.

Datasets

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954
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