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2020

Journal Paper with direct contribution

  • Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  • RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  • RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  • Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  • Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.
  • A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.
  • Orue-Echevarría, D., Castellanos, P., Sans, J., Emelianov, M., Vallés-Casanova, I., and Pelegrí, J. L. 2019. Temperature spatio-temporal correlation scales in the Brazil Malvinas Confluence from high-resolution in-situ and remote sensing data. Geophysical Research Letter. https://doi.org/10.1029/2019GL084246
  • Cabral, S., Carvalho, F., Gaspar, M., Ramajal, J., Sá, E., Santos, C., Silva, G., Sousa, A., Costa, J.L., Chainho, P. 2019. Non-indigenous species in soft-sediments: Are some estuaries more invaded than others? Ecological Indicators. In press. https://doi.org/10.1016/j.ecolind.2019.105640
  • Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
  • Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
  • Brito, A.C., Garrido-Amador, P., Gameiro, C., Nogueira, M., Moita, M.T., Cabrita, M.T. (2020). Integrating in situ and ocean color data to evaluate ecological quality under the Water Framework Directive. Water, 12, 3443.
  • Ferreira, A., Brotas, V., Palma, C., Borges, C., Brito, A.C. (in review). Assessing phytoplankton bloom phenology in upwelling-influenced regions using ocean colour remote sensing. Remote Sensing
  • Sent, G., Biguino, B., Favareto, L., Cruz, J., Sá, C., Dogliotti, A., Brotas, V., Brito, A.C. (in review). Deriving water quality parameters using Sentinel-2 imagery: A case study in the Sado estuary, Portugal. Remote Sensing.
  • Sroczyńska, K., A. Conde, P. Chainho & H. Adão (2021). How nematode morphometric attributes integrate with taxonomy-based measures along an estuarine gradient. Ecological Indicators 124: 107384. https://doi.org/10.1016/j.ecolind.2021.107384
  • Afonso, I., E. Berecibar, N. Castro, J.L. Costa, P. Frias, P. Moreira, P. Oliveira, F. Henriques, G. Silva & P. Chainho. (2020). Assessment of the colonization and dispersal success of non-indigenous species introduced in recreational marinas. Ecological Indicators 113: 106147. https://doi.org/10.1016/j.ecolind.2020.106147
  • Vieira, S., P. Barrulas , P. Chainho C. Dias, K. Sroczyńska & H. Adão (accepted). Multi-element composition as a tool for spatial and temporal habitat discrimination of the non-indigenous clam Ruditapes philippinarum (Adam & Reeve, 1850) populations. Ecological Indicators.
  • Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Alexandre, C.M., Quintella, B.R. 2020. Migration and escapement of silver eel males, Anguilla anguilla, from a southwestern European river. Ecology of Freshwater Fish, 29: 679-692. https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12545
  • Rato, A.S., Alexandre, C.M., Almeida, P.R., Costa, J.L., Quintella, B.R. 2021. Effects of hydropeaking on the behaviour, fine-scale movements and habitat selection of an Iberian cyprinid fish. River Research and Applications
  • Santis, W., Castellanos, P., Campos, E. J. D. 2020. Memory effect within the Southern Atlantic Subtropical Dipole variability. Journal of Climate. Vol 33, nº 17. 7679-7696. DOI: 10.1175/JCLI-D-19-0745.1
  • Orue-Echevarría, D., Pelegrí, J. L., Castellanos, P., Guallar, C., Marotta, H., Marrasé., Martín, J., Masdeu-Navarro, M., Paniagua, G.F., Peña Izquierdo, J., Puigdefábregas, J., Rodríguez-Fonseca, B., Roget, E., Rosell-Fieschi, M., Salat, J., Salvador, J., Vallés-Casanova, I., Vidal, M., Viúdez, A. 2020. Dataset on the RETRO-BMC cruise onboard the R/V Hespérides, April 2017, Brazil-Malvinas Confluence. Data in Brief Vol.30,105412. https://doi.org/10.1016/j.dib.2020.105412
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.101504
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.103.024020
  • https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.124009
  • https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0239816
  • https://www.frontiersin.org/articles/10.3389/fpsyg.2019.02796/full#fun1

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

  • PD/BD/137492/2018
  • SFRH/BD/148542/2019
  • Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  • João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  • PhD thesis de Guilherme Espada (LASIGE/FCUL)
  • PhD thesis de Paulo Santos (LASIGE/FCUL)
  • Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018
  • Biology and ecology of allis shad in Portugal: contributions of fluvial restoration and participated management to its conservation. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/123434/2016)
  • Catadromous migration of the Thinlip grey mullet (Liza ramada Risso, 1827) and its importance to fluvial ecosystems. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/121042/2016)
  • Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. MSc Thesis in Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências
  • Water quality indexes for Estuarine Waters: assessment of temporal and spatial variability. PhD Thesis, Universidade de Lisboa (EARTHSYSTEMS FCT – Programa Doutoral – PD/BD/135064/2017)
  • Evaluating the design and size adequacy of a Marine Protected Area to promote small-scale artisanal fisheries management. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (Bolsa FCT referência SFRH/BD/131868/2017)
  • Assessment of anthropogenic impacts on the European Eel in Portugal. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (EARTHSYSTEMS FCT – Programa Doutoral - PD/143/2012)
  • Phytoplankton response to climate change on the North Atlantic and Southern Ocean. PhD Thesis. Universidade de Lisboa. (FCT- SFRH/BD/144586/2019)
  • Phytoplankton community in the Algarve coastal region: implications to aquaculture production. MSc Thesis in Ciências do Mar. Universidade de Lisboa
  • Bio-optical properties of Portuguese coastal waters with emphasis on the detection of Functional Types of Phytoplankton. PhD Thesis, Universidade de Lisboa (Bolsa CNPq referência 200589/2019-9)
  • Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.
  • Bayesian approach to Ecological Monitoring data: Latent Growth Curve Models. Mestrado em Bioestatística, Universidade de Lisboa, Faculdade de Ciências.

Master Thesis

  • Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
  • Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
  • Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • "A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)
  • MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.
  • Santos, C. 2019. Estado atual das populações de berbigão (Cerastoderma spp) no estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências. 64 pp.
  • Ferreira, M. 2019. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 45 pp.

Conference Paper

"A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020

Conference Poster

Datasets

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954
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