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2020

Journal Paper with direct contribution

  • Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  • RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  • RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  • Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  • Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.
  • A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

  • PD/BD/137492/2018
  • SFRH/BD/148542/2019
  • Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  • João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  • PhD thesis de Guilherme Espada (LASIGE/FCUL)
  • PhD thesis de Paulo Santos (LASIGE/FCUL)
  • Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018

Master Thesis

  • Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
  • Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
  • Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • "A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)
  • MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  • Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.

Conference Paper

"A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020

Conference Poster

Datasets

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954
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