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2020

Journal Paper with direct contribution

  • Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  • RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  • RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  • Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  • Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

  • PD/BD/137492/2018
  • SFRH/BD/148542/2019
  • Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  • João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  • PhD thesis de Guilherme Espada (LASIGE/FCUL)
  • PhD thesis de Paulo Santos (LASIGE/FCUL)

Master Thesis

  • Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.

  • Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url

  • Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)

  • "A

    broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)

  • MSc thesis de Máximo Oliveira (LASIGE/FCUL)

Conference Paper

"A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020

Conference Poster

Datasets

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954
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