Scientific Publications

Scientific publications which used INCD resources

2022

International articles with referee

  1. Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 10.3389/fnins.2022.862315
  2. Magalhães, Rita P., et al. "Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach." Molecular Systems Design & Engineering 7.5 (2022): 434-446. https://doi.org/10.1039/D2ME00009A
  3. Burke, Anthony J., Carla SS Teixeira, and Sergio F. Sousa. "Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product." Asian Journal of Organic Chemistry 11.4 (2022): e202100692. https://doi.org/10.1002/ajoc.202100692
  4. Lapaillerie, Delphine, et al. "Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces." Antimicrobial Agents and Chemotherapy 66.8 (2022): e00083-22. https://doi.org/10.1128/aac.00083-22
  5. Araškov, Jovana B., et al. "Zn (II) complexes with thiazolyl–hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity." CrystEngComm 24.29 (2022): 5194-5214. https://doi.org/10.1039/D2CE00443G
  6. Keller-Costa, Tina, et al. "Evidence for cross-feeding, metabolic specialization, and niche partitioning in the octocoral holobiont." (2022). https://doi.org/10.21203/rs.3.rs-1630933/v1
  7. Nogueira, Paulo Jorge, et al. "Multimorbidity profile of COVID-19 deaths in Portugal during 2020." Journal of clinical medicine 11.7 (2022): 1898. https://doi.org/10.3390/jcm11071898
  8. Silva, Sandra Godinho, et al. "Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere." Marine Drugs 20.7 (2022): 423. https://doi.org/10.3390/md20070423
  9. Fernandes, Henrique S., et al. "A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems." Molecules 27.17 (2022): 5524. https://doi.org/10.3390/molecules27175524
  10. Vieira, Tatiana F., et al. "Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations." Antibiotics 11.2 (2022): 185. https://doi.org/10.3390/antibiotics11020185
  11. Rocha, Juliana F., Sérgio F. Sousa, and Nuno MF Sousa A. Cerqueira. "Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids." ACS Catalysis 12.9 (2022): 4990-4999. https://doi.org/10.1021/acscatal.1c05567
  12. Pereira, Ana Cláudia, et al. "Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells." Molecular Systems Design & Engineering (2022). https://doi.org/10.1039/D2ME00022A
  13. Rodrigues, João Antunes, et al. "Automatic Risk Assessment for an Industrial Asset Using Unsupervised and Supervised Learning." Energies 15.24 (2022): 9387. https://doi.org/10.3390/en15249387
  14. Silva, Sara, et al. "Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface." Molecules 27.9 (2022): 2734. https://doi.org/10.3390/molecules27092734
  15. Pires, Rita Costa, et al. "Transcriptome Analysis in Cork Oak Using Laser Microdissection and RNA-Seq." Biology and Life Sciences Forum. Vol. 11. No. 1. MDPI, 2021. https://doi.org/10.3390/IECPS2021-11914
  16. Vilela, Joana, et al. "Biomedical knowledge graph embeddings for personalized medicine: Predicting disease‐gene associations." Expert Systems (2022): e13181. https://doi.org/10.1111/exsy.13181
  17. Caled, D., Carvalho, P., Silva, M.J. (2022). MINT - Mainstream and Independent News Text Corpus. In: , et al. Computational Processing of the Portuguese Language. PROPOR 2022. Lecture Notes in Computer Science(), vol 13208. Springer, Cham. https://doi.org/10.1007/978-3-030-98305-5_3
  18. Silva, Margarida, et al. "A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast." Molecular Ecology (2022). https://doi.org/10.1111/mec.16428
  19. Vieira, Tatiana F., et al. "Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach." Molecular Systems Design & Engineering 7.10 (2022): 1294-1306. https://doi.org/10.1039/D2ME00088A
  20. Catumba, Guilherme TR, Orlando Oliveira, and Paulo J. Silva. "Another look at the Landau gauge three-gluon vertex." EPJ Web of Conferences. Vol. 258. EDP Sciences, 2022. https://doi.org/10.1051/epjconf/202225802008
  21. Comparison of Different Features and Neural Networks for Predicting Industrial Paper Press Condition; João Antunes Rodrigues, José Torres Farinha, Mateus Mendes, Ricardo J. G. Mateus, António J. Marques Cardoso. https://doi.org/10.3390/en15176308
  22. Antunes Rodrigues J, Torres Farinha J, Mendes M, Mateus R, Marques Cardoso A. Short and long forecast to implement predictive maintenance in a pulp industry. Eksploatacja i Niezawodnosc – Maintenance and Reliability 2022; 24 (1): 33–41 http://dx.doi.org/10.17531/ein.2022.1.5
  23. Isidro, J., Borges, V., Pinto, M. et al. Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nat Med 28, 1569–1572 (2022). https://doi.org/10.1038/s41591-022-01907-y
  24. Adriana M. Saur, Jorge Sinval, Cristina M. Del-Ben, Rosângela F. L. Batista8, Antônio A. M. Da Silva, Marco A. Barbieri1, Heloisa Bettiol1 The Postpartum Bonding Questionnaire: validity evidence from the Brazilian version; Journal of Child and Family Studies (https://doi.org/10.1007/s10826-022-02406-x)
  25. João A.Marques da SilvaaMiguelVieira de CarvalhoabRui P.Cardoso CoelhoabIgor A.Rodrigues LopesabFrancisco M.Andrade Piresab On the representativeness of polycrystalline models with transformation induced plasticity; Finite Elements in Analysis and Design (https://doi.org/10.1016/j.finel.2022.103875)
  26. Aggregation of a Parkinson’s Disease-Related Peptide: When Does Urea Weaken Hydrophobic Interactions? N. Galamba* Cite this: ACS Chem. Neurosci. 2022, 13, 12, 1769–1781 Publication Date:May 26, 2022 (https://doi.org/10.1021/acschemneuro.2c00169)
  27. Gadelho, J., Guedes Soares, C., Barajas, G., & Lara, J. L. (2022). CFD analysis of the PTO damping on the performance of an onshore dual chamber OWC. In C. Guedes Soares & T. A. Santos, Trends in Maritime Technology and Engineering Volume 2 (1st ed., pp. 381–389). CRC Press. https://doi.org/10.1201/9781003320289-40
  28. Gadelho, J., & Guedes Soares, C., (2022). Pneumatic performance improvement of an onshore dual chamber OWC using a CFD model. In Trends in Renewable Energies Offshore (Guedes Soares C., (Ed.)). https://doi.org/10.1201/9781003360773-36
  29. Non-B DNA conformations analysis through molecular dynamics simulations - ScienceDirect André F. Pina, Sérgio F. Sousa, Luísa Azevedo, João Carneiro, Non-B DNA conformations analysis through molecular dynamics simulations, Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 1866, Issue 12, 2022, 130252, ISSN 0304-4165, https://doi.org/10.1016/j.bbagen.2022.130252.
  30. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations (mdpi.com) Boudjouan F, Zeghbib W, Carneiro J, Silva R, Morais J, Vasconcelos V, Lopes G. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations. Agriculture. 2022; 12(11):1755. https://doi.org/10.3390/agriculture12111755
  31. Bendall EE, Bagley R, Linnen CR, Sousa VC (2022) Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31, 2348–2366. https://doi.org/10.1111/mec.16410
  32. João Carvalho, Hernan Morales, Rui Faria, Roger Butlin, Vitor Sousa (2022) Integrating Pool-seq uncertainties into demographic inference. Authorea. December 05, 2022. DOI: 10.22541/au.167023671.11036754/v1
  33. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Insights into the Degradation of Polymer-Drug Conjugates by an Overexpressed Enzyme in Cancer Cells, J. Med. Chem. 2023, doi.org/10.1021/acs.jmedchem.2c01781.
  34. Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek Quinn, Thomas S. Moody, Andreia F. Sousa, Armando J.D. Silvestre, and Alexandra T.P. Carvalho. Org. Process Res. Dev. 2022. doi.org/10.1021/acs.oprd.1c00480.
  35. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022) A drug discovery approach based on comparative transcriptomics between two toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. Mol Omics, 18(8), 731-744. doi: 10.1039/D2MO00138A
  36. RODRIGO, A.P., LOPES, A., PEREIRA, R., ANJO, S.I., MANADAS, B., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2022) Endogenous Fluorescent Proteins in the Mucus of an Intertidal Polychaeta: Clues for Biotechnology. Mar Drugs, 20(4), 224. doi: 10.3390/md20040224
  37. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Echium plantagineum L. (Boraginaceae), the first chloroplast genome belonging to the Echium genus. Mitochondrial DNA Part B, 7(6), 1154–1156. https://doi.org/10.1080/23802359.2022.2087559
  38. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Nonea vesicaria (L.) Rchb. (Boraginaceae), the first chloroplast genome belonging to the Nonea genus. Mitochondrial DNA Part B, 7(7), 1302–1304. https://doi.org/10.1080/23802359.2022.2095233
  39. Leonardo, I. C., Barreto Crespo, M. T., & Gaspar, F. B. (2022). Unveiling the complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a taint-producing strain. G3 Genes|Genomes|Genetics, jkac225. https://doi.org/10.1093/g3journal/jkac225
  40. Non-B DNA conformations analysis through molecular dynamics simulations Pina A.F., Sousa S.F., Azevedo L., and Carneiro J.Biochimica et Biophysica Acta - General Subjects 1866 (12) (2022) Article | DOI: 10.1016/j.bbagen.2022.130252
  41. Liposomal Formulations Loaded with a Eugenol Derivative for Application as Insecticides: Encapsulation Studies and In Silico Identification of Protein Targets Fernandes M.J.G., Pereira R.B., Rodrigues A.R.O., Vieira T.F., Fortes A.G., Pereira D.M., Sousa S.F., Goncalves M.S.T., and Castanheira E.M.S. Nanomaterials 12 (20) (2022) Article | DOI: 10.3390/nano12203583
  42. A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems Fernandes H.S., Cerqueira N.M.F.S.A., Sousa S.F., and Melo A.Molecules 27 (17) (2022) Article | DOI: 10.3390/molecules27175524
  43. Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Lapaillerie D., Charlier C., Guyonnet-Duperat V., Murigneux E., Fernandes H.S., Martins F.G., Magalhaes R.P., Vieira T.F., Richetta C., Subra F., Lebourgeois S., Charpentier C., Descamps D., Visseaux B., Weigel P., Favereaux A., Beauvineau C., Buron F., Teulade-Fichou M.-P., Routier S., Gallois-Montbrun S., Meertens L., Delelis O., Sousa S.F.,and Parissi V. Antimicrobial Agents and Chemotherapy 66 (8) (2022) Article | DOI: 10.1128/aac.00083-22
  44. Synthesis, computational and nanoencapsulation studies on eugenol-derived insecticides Coelho C.M.M., Pereira R.B., Vieira T.F., Teixeira C.M., Fernandes M.J.G., Rodrigues A.R.O., Pereira D.M., Sousa S.F.,Gil Fortes A., Castanheira E.M.S., and T. Goncalves M.S. New Journal of Chemistry 46 (30) pp.14375-14387 (2022) Article | DOI: 10.1039/d2nj01893d
  45. Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach Vieira T.F., Magalhaes R.P., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering (2022) Article | DOI: 10.1039/d2me00088a
  46. Study of the anticancer potential of Cd complexes of selenazoyl-hydrazones and their sulfur isosters Markovic S.B., Maciejewska N., Olszewski M., Visnjevac A., Puerta A., Padron J.M., Novakovic I., Kojic S., Fernandes H.S., Sousa S.F., Ramotowska S., Chylewska A., Makowski M., Todorovic T.R., and Filipovic N.R. European Journal of Medicinal Chemistry 238 (2022) Article | DOI: 10.1016/j.ejmech.2022.114449
  47. New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes H.S., Sousa S.F., and Cerqueira N.M.F.S.A. Molecular Diversity 26 (3) pp.1373-1381 (2022) Article | DOI: 10.1007/s11030-021-10259-7
  48. Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids Rocha J.F., Sousa S.F., and Cerqueira N.M.F.S.A. ACS Catalysis 12 (9) pp.4990-4999 (2022) Article | DOI: 10.1021/acscatal.1c05567
  49. The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina A.F., Sousa S.F., and Cerqueira N.M.F.S.A. ChemBioChem 23 (9) (2022) (IF 3.461, Q1)Article | DOI: 10.1002/cbic.202100555
  50. Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface Silva S., Marto J., Goncalves L.M., Fernandes H.S., Sousa S.F., Almeida A.J., and Vale N. Molecules 27 (9) (2022) Article | DOI: 10.3390/molecules27092734
  51. The critical role of Asp206 stabilizing residues on the catalytic mechanism of the Ideonella sakaiensis PETase Magalhaes R.P., Fernandes H.S., and Sousa S.F. Catalysis Science and Technology 12 (11) pp.3474-3483 (2022) Article | DOI: 10.1039/d1cy02271g
  52. Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product Burke A.J., Teixeira C.S.S., and Sousa S.F.Asian Journal of Organic Chemistry 11 (4) (2022) Article | DOI: 10.1002/ajoc.202100692
  53. Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells Pereira A.C., Pina A.F., Sousa D., Ferreira D., Santos-Pereira C., Rodrigues J.L., Melo L.D.R., Sales G., Sousa S.F., and Rodrigues L.R. Molecular Systems Design and Engineering 7 (6) pp.637-650 (2022) Article | DOI: 10.1039/d2me00022a
  54. Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach Magalhaes R.P., Vieira T.F., Melo A., and Sousa S.F. Molecular Systems Design and Engineering 7 (5) pp.434-446 (2022) Article | DOI: 10.1039/d2me00009a
  55. Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations Vieira T.F., Magalhaes R.P., Simoes M., and Sousa S.F. Antibiotics 11 (2) (2022) (IF 5.22) Article | DOI: 10.3390/antibiotics11020185
  56. Zn(II) complexes with thiazolyl-hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity Araskov J.B., Visnjevac A., Popovic J., Blagojevic V., Fernandes H.S., Sousa S.F., Novakovic I., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-De-Luzuriaga J.M., Filipovic N.R., and Todorovic T.R. CrystEngComm (2022) Article | DOI: 10.1039/d2ce00443g
  57. Biguino, B., Olmedo, E., Ferreira, A., Zacarias, N., Lamas, L., Favareto, L., Palma, C., Borges, C., Teles-Machado, A., Dias, J., Castellanos, P. & Brito, A.C. 2022. Evaluation of SMOS L4 Sea Surface Salinity product in the Western Iberian Coast. Remote Sensing, 14. 423. https://www.mdpi.com/2072-4292/14/2/423
  58. Cereja, R., Brotas, V., Nunes, S., Rodrigues, M., Cruz, J.P. & Brito, A.C. 2022. Tidal influence on water quality indicators in a temperate mesotidal estuary (Tagus estuary, Portugal). Ecological Indicators, 136. 108715. https://www.sciencedirect.com/science/article/pii/S1470160X22001868
  59. Santos, C., Cabral, S., Carvalho, F., Sousa, P., Goulding, T., Ramajal, J.  Silva, G.,  Brito, A.C., Costa, J.L. & Chainho, P. 2022. Spatial and temporal variations of cockle (Cerastoderma spp.) populations in two Portuguese estuarine systems with low directed fishing pressure. Frontiers in Marine Science 9. 699622. https://www.frontiersin.org/articles/10.3389/fmars.2022.699622/full
  60. Silva, A.F., Costa, B.H..; Costa, J.L., Pereira, E., Marques, J.P., Castro, J.J., Lino, P.G., Candeias-Mendes, A., Pousão-Ferreira, P., Sousa, I., Bentes L., Gonçalves, J.M.S., Almeida, P.R. & Quintella, B.R. 2022. Movements of Hatchery-Reared Dusky Groupers Released in a Northeast Atlantic Coastal Marine Protected Area. Journal of Marine Sciences and Engineering, 94. 10. https://www.mdpi.com/2077-1312/10/7/904
  61. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  62. A parametric approach for the identification of single-charged isotopes with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1031 (2022) 166564 10.1016/j.nima.2022.166564
  63. Iterative-Bayesian unfolding of cosmic-ray isotope fluxes measured by AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1046 (2023) 167695 10.1016/j.nima.2022.167695
  64. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  65. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  66. Measurement of Higgs boson decay into b-quarks in associated production with a top-quark pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2917 authors) J. High Energy Phys. 6 (2022) 097 10.1007/JHEP06(2022)097
  67. The Muon Puzzle in cosmic-ray induced air showers and its connection to the Large Hadron Collider Johannes Albrecht, Lorenzo Cazon, Hans Dembinski, Anatoli Fedynitch, Karl-Heinz Kampert, Tanguy Pierog, Wolfgang Rhode, Dennis Soldin, Bernhard Spaan, Ralf Ulrich, Michael Unger Astrophys. Space Sci. 367 (2022) 27 10.1007/s10509-022-04054-5
  68. Arrival Directions of Cosmic Rays above 32 EeV from Phase One of the Pierre Auger Observatory Pierre Auger Collaboration (373 authors) Astrophys. J. 935 (2022) 170 10.3847/1538-4357/ac7d4e
  69. A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory The Pierre Auger Collaboration Astrophysical Journal Supplement 264 (2023) 2, 50
  70. Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at 13 TeV CMS Collaboration arXiv.2206.09401 https://doi.org/10.48550/arXiv.2206.09401
  71. Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. Rev.Phys. 8 (2022) 100071
  72. Observation of Bs0 mesons and measurement of the Bs0/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration (2328 authors) Phys. Lett. B 829 (2022) 137062 10.1016/j.physletb.2022.137062
  73. A portrait of the Higgs boson by the CMS experiment ten years after the discovery CMS collaboration Nature 607 (2022) 7917, 60-68 10.1038/s41586-022-04892-x
  74. Search for high-mass exclusive gammagamma-> WW and gammagamma-> ZZ production in proton-proton collisions at sqrt(s) = 13 TeV CMS and TOTEM Collaborations arXiv:2211.16320
  75. Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations arXiv:2210.0585
  76. A machine learning-based methodology for pulse classification in dual-phase xenon time projection chambers P. Bras, F. Neves, A. Lindote, A. Cottle, R. Cabrita, E. Lopez Asamar, G. Pereira, C. Silva, V. Solovov, M.I. Lopes Eur. Phys. J. C 82 (2022) 553 10.1140/epjc/s10052-022-10502-x
  77. Radiation as a Tool against Neurodegeneration-A Potential Treatment for Amyloidosis in the Central Nervous System Coelho CM, Pereira L, Teubig P, Santos P, Mendes F, Viñals S, Galaviz D, Herrera F 10.3390/ijms232012265
  78. Determination of Ionizing Threshold of Trimethylamine Ions with a High Resolution RGA Mass Spectrometer A.M.F. Trindade, J. Escada, M. Rajado Silva, F.I.G.M. Borges, F.P. Santos 10.1088/1748-0221/17/02/P02031
  79. Dual-Polarity Ion Drift Chamber: A new system to measure the mobility of positive and negative ions D.J.G. Marques, A.F.V. Cortez, M.A.G. Santos, F.P. Santos, A.P. Marques, J. Escada, C.A.N. Conde, F.I.G.M. Borges NIMA 1029 (2022) 166416 10.1016/j.nima.2022.166416
  80. Dual-Polarity Ion Drift Chamber: Experimental results with Xe–S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 https://doi.org/10.1016/j.nima.2022.167575
  81. A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 https://doi.org/10.1016/j.nima.2022.167603
  82. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  83. All-sky Medium Energy Gamma-ray Observatory eXplorer mission concept Regina Caputo, Marco Ajello, Carolyn A. Kierans, Jeremy S. Perkins, Judith L. Racusin, Luca Baldini, Matthew G. Baring, Elisabetta Bissaldi, Eric Burns, Nicholas Cannady, Eric Charles, Rui M. Curado da Silva, Ke Fang, Henrike Fleischhack, Chris Fryer, Yasushi Fukazawa, J. Eric Grove, Dieter Hartmann, Eric J. Howell, Manoj Jadhav, Christopher M. Karwin, Daniel Kocevski, Naoko Kurahashi, Luca Latronico, Tiffany R. Lewis, Richard Leys, Amy Lien, Lea Marcotulli, Israel Martinez-Castellanos, Mario Nicola Mazziotta, Julie McEnery, Jessica Metcalfe, Kohta Murase, Michela Negro, Lucas Parker, Bernard Phlips, Chanda Prescod-Weinstein, Soebur Razzaque, Peter S. Shawhan, Yong Sheng, Tom A. Shutt, Daniel Shy, Clio Sleator, Amanda L. Steinhebel, Nicolas Striebig, Yusuke Suda, Donggeun Tak, Hiro Tajima, Janeth Valverde, Tonia M. Venters, Zorawar Wadiasingh, Richard S. Woolf, Eric A. Wulf, Haocheng Zhang, Andreas Zoglauer Journal of Astronomical Telescopes, Instruments, and Systems, Vol. 8, Issue 4, 044003 (October 2022). https://doi.org/10.1117/1.JATIS.8.4.044003
  84. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  85. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  86. Techniques for TPC Calibration: application to liquid Ar-TPCs J. Maneira for the DUNE Collaboration Particles 2022, 5(1), 74-83
  87. Improved search for invisible modes of nucleon decay in water with the SNO+ detector SNO+ Collaboration Phys. Rev. D 105, 112012 (2022) 10.1103/PhysRevD.105.112012
  88. Going to the light front with contour deformations Gernot Eichmann, Eduardo Ferreira, Alfred Stadler (selected for Editor’s Choice) Phys.Rev.D 105 (2022) 3, 034009 https://doi.org/10.1103/PhysRevD.105.034009
  89. Theory introduction to baryon spectroscopy, Gernot Eichmann Few-Body Systems volume 63, Article number: 57 (2022) https://doi.org/10.1007/s00601-022-01756-y
  90. Isotopic cross sections of fragmentation residues produced by light projectiles on carbon near 400A MeV J. M. Boillos, D. Cortina-Gil, J. Benlliure, et al. (R3B collaboration) Phys. Rev. C 105, 014611 (2022) 10.1103/PhysRevC.105.014611
  91. Structure Calculations in Nd III and U III Relevant for Kilonovae Modelling Ricardo F. Silva, Jorge M. Sampaio, Pedro Amaro, Andreas Flörs, Gabriel Martínez-Pinedo, and José P. Marques Atoms2022,10,18 10.3390/atoms10010018
  92. Structure of single KL0–, double KL1–, and triple KL2−ionization in Mg, Al, and Si targets induced by photons, and their absorption spectra Y. Ménesguen, M.-C. Lépy, Y. Ito, M. Yamashita, S. Fukushima, T. Tochio, M. Polasik, K. Slabkowska,L. Syrockif, P. Indelicatog, J. P. Gomilsekh, J. P. Marques, J.M.Sampaio, J. Machado, P. Amaro, M. Guerra, J. P. Santos, and F. Parente Rad. Phys. Chem. 194, 110048 (2022) 10.1016/j.radphyschem.2022.110048
  93. Unveiling the two-proton halo character of 17Ne: Exclusive measurement of quasi-free proton-knockout reactions C. Lehr, F. Wamers, F.Aksouh, et al. Phys. Lett. B 827, 136957 (2022) 10.1016/j.physletb.2022.136957
  94. Experimental and theoretical approaches for determining the K-shell fluorescence yield of carbon Philipp Hönicke, Rainer Unterumsberger, Nils Wauschkuhn, Burkhard Beckhoff, Markus Krämer, Paul Indelicato, Jorge Sampaio, José Pires Marques, Mauro Guerra, Fernando Parente, and José Paulo Santos Rad. Phys. Chem. 202, 110501 (2023) 10.1016/j.radphyschem.2022.110501
  95. L-shell fluorescence yield for heavy elements with 80≤Z≤96 K. Meddouh, S. Daoudi, A. Kahoul, J.M. Sampaio, J.P. Marques, F. Parente, N. Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani Rad. Phys. Chem. 202, 110481 (2023) 10.1016/j.radphyschem.2022.110481
  96. K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence Daniel Pinheiro, André Fernandes, César Godinho, Jorge Machado, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, Mauro Guerra Rad. Phys. Chem. 203, 110594 (2023) 10.1016/j.radphyschem.2022.110594
  97. Semi-empirical and empirical calculation of Kβ/Kα intensity ratios for Low-Z Elements A. Hamidani, A. Kahoul, S. Daoudi, J.M. Sampaio, J.P. Marques, F. Parente, K. Meddouh, N. Kup Aylikci, V. Aylikci, Y. Kasri At. Nucl. Data Tables 149, 101549 (2023) 10.1016/j.adt.2022.101549
  98. Independently Optimized Orbital Sets in GRASP – The Case of Hyperfine Structure in Li I Y. Li, P. Jönsson, M. Godefroid, G. Gaigalas, J. Bieron, J. P. Marques, P. Indelicato, and C. Chen Atoms 2023, 11, 4 10.3390/atoms11010004
  99. Design of beam optics for RF-separated kaon and antiproton beams in the M2 beam line of the CERN North Area A. Gerbershagen et al. (14 authors) NIM A 1048 (2023) 168004 https://doi.org/10.1016/j.nima.2022.168004
  100. An experiment for electron-hadron scattering at the LHC K.D. J. André et al Eur.Phys.J.C 82 (2022) 1, 40 10.1140/epjc/s10052-021-09967-z
  101. A template method to measure the t(t)over-bar polarisation J. A. Aguilar-Saavedra, M. C. N. Fiolhais, P. Martin-Ramiro, J. M. Moreno, A. Onofre Eur. Phys. J. C 82 (2022) 134 10.1140/epjc/s10052-022-10063-z
  102. Impact of jet-production data on the next-to-next-to-leading-order determination of HERAPDF2.0 parton distributions H1 Collaboration / ZEUS Collaboration (234 authors) Eur. Phys. J. C 82 (2022) 243 10.1140/epjc/s10052-022-10083-9
  103. Jets and Jet Substructure at Future Colliders Johan Bonilla et al. (27 authors) Front. Physics 10 (2022) 897719 10.3389/fphy.2022.897719
  104. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  105. On the polarization of the non-prompt contribution to inclusive J/psi production in pp collisions Pietro Faccioli, Carlos Lourenco J. High Energy Phys. 10 (2022) 010 10.1007/JHEP10(2022)010
  106. NNLO interpolation grids for jet production at the LHC D. Britzger, A. Gehrmann-De Ridder, T. Gehrmann, E. W. N. Glover, C. Gwenlan, A. Huss, J. Pires, K. Rabbertz, D. Savoiu, M. R. Sutton, J. Stark Eur.Phys.J.C 82 (2022) 10, 930 10.1140/epjc/s10052-022-10880-2
  107. Improved background subtraction and a fresh look at jet sub-structure in JEWEL J. G. Milhano and K. Zapp Eur. Phys. J. C82 (2022) no.11, 1010 10.1140/epjc/s10052-022-10954-1
  108. Multiparticle production in proton-nucleus collisions beyond eikonal accuracy P. Agostini, T. Altinoluk, N. Armesto, F. Dominguez and J. G. Milhano Eur. Phys. J. C82 (2022) no.11, 1001 10.1140/epjc/s10052-022-10962-1
  109. Flavour-Changing Neutral Scalar Interactions of the Top Quark Nuno Castro, Kirill Skovpen Universe 2022, 8, 609 10.3390/universe8110609
  110. Heavy quarks and jets as probes of the QGP Liliana Apolinário, Michael Winn, Yen-Jie Lee Prog.Part.Nucl.Phys. 127 (2022) 103990 10.1016/j.ppnp.2022.103990
  111. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  112. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  113. SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Colaboration To be published in JINST (arXiv:2210.02784)
  114. The SHiP experiment at the proposed CERN SPS Beam Dump Facility SHiP Collaboration Eur.Phys.J.C 82 (2022) 5, 486 https://doi.org/10.1140/epjc/s10052-022-10346-5
  115. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  116. Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa arXiv:2211.03233 10.48550/arXiv.2211.03233
  117. A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 DOI: 10.1126/sciadv.abm4234
  118. Validation of dMEREM, the Detailed Mars Energetic Radiation Environment Model, with RAD Data from the Surface of Mars Patricia Goncalves, Luisa Arruda, Marco Pinto Front. Astron. Space Sci. 9 (2022) 833144 10.3389/fspas.2022.833144
  119. Pioneering evaluation of GaN transistors in geostationary satellites Hugo Mostardinha, Diogo Matos, Nuno Borges Carvalho, Jorge Sampaio, Marco Pinto, Patricia Gonçalves, Tiago Sousa, Paul Kurpas, Joachim Wuerfl, Andrew Barnes, François Garat & Christian Poivey Sci Rep 12, 12886 (2022) https://doi.org/10.1038/s41598-022-17179-y
  120. The BepiColombo Environment Radiation Monitor, BERM Marco Pinto, Beatriz Sanchez-Cano, Richard Moissl, Johannes Benkhoff, Carlota Cardoso, Patrícia Gonçalves, Pedro Assis, Rami Vainio, Philipp Oleynik, Arto Lehtolainen, Manuel Grande & Arlindo Marques Space Sci. Rev. 218 (2022) 54 10.1007/s11214-022-00922-2
  121. Tackling the muon identification in water Cherenkov detectors problem for the future Southern Wide-field Gamma-ray Observatory by means of Machine Learning B.S. González, R. Conceição, M. Pimenta, B. Tomé, A. Guillén Neural Computing & Applications 34, pages 5715–5728 (2022) https://doi.org/10.1007/s00521-021-06730-z
  122. P_{\gamma h}^{\alpha} A new variable for γ/h discrimination in large gamma-ray ground arrays R. Conceição, B.S. González, M. Pimenta, B. Tomé Phys.Lett.B 827 (2022) 136969 10.1016/j.physletb.2022.136969
  123. The relation between optical and γ-ray emission in BL Lac sources G La Mura, J Becerra Gonzalez, G Chiaro, S Ciroi, J Otero-Santos Monthly Notices of the Royal Astronomical Society, Volume 515, Issue 4, October 2022, Pages 4810–4827 10.1093/mnras/stac2041
  124. The Mercedes water Cherenkov detector P. Assis, A. Bakalová, U. Barres de Almeida, P. Brogueira, R. Conceição, A. De Angelis, L. Gibilisco, B. S. González, A. Guillén, G. La Mura, L. M. D. Mendes, L. F. Mendes, M. Pimenta, R. C. Shellard, B. Tomé, J. Vícha Eur.Phys.J.C 82 (2022) 10, 899 10.1140/epjc/s10052-022-10857-1
  125. Gamma/hadron discrimination at high energies through the azimuthal fluctuations of the particle distributions at ground R. Conceição, L. Gibilisco, M. Pimenta, B. Tomé JCAP 10 (2022) 086 https://doi.org/10.1088/1475-7516/2022/10/086
  126. Evaluation of the potential of a gamma-ray observatory to detect astrophysical neutrinos through inclined showers Jaime Alvarez-Muñiz, Ruben Conceição, Pedro J. Costa, Mário Pimenta, Bernardo Tomé Phys.Rev.D 106 (2022) 10, 102001 10.1103/PhysRevD.106.102001

Oral Presentations

  1. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Activation of Gemcitabine-Polyester Conjugates in Tumor Tissues. BEB Day 2023 - Science Challenges 2023.
  2. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Xenonucleic acids for advanced therapeutics. Virtual Winter School on Computational Chemistry 2022.
  3. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Catalytic Cycle of the Human Carboxylesterase 2. Virtual Winter School on Computational Chemistry 2022.
  4. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Hydrolysis of cocaine towards less toxic products: a QM/MM approach. BEB Day 2022 - The overview effect 2022.
  5. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Principal Component Analysis of the Human Carboxylesterase 2 Active Site Conformations. BEB Day 2022 - The overview effect 2022.
  6. Beatriz C. Almeida, Jennifer Kaczmarek, Kristala L. Jones Prather and Alexandra T. P. Carvalho. Allosteric transcription factor: essential residues. 8th Annual CCPBioSim Conference - Frontiers in Biomolecular Simulation 2022.
  7. COSTA, P.M. (2022). Marine Biotechnology: Applications in Sustainability and Medicine: prospects and tools for bioprospecting. VII Semana da Bioengenharia. Instituto Superior Técnico da Universidade de Lisboa, Lisboa (Portugal), March 2022 (invited speaker).
  8. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology. Dutch Society of Toxicology, Maastricht (Netherlands), September 2022.
  9. RODRIGO, A.P., GONÇALVES, C., MOUTINHO CABRAL, I., MARTINS, C., D'Ambrosio, M., MADEIRA, C., COSTA P.M. (2022). Advances in the bioprospecting for novel bioreactives from marine invertebrates: Multi-omics and computational strategies. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022. (Invited speaker)
  10. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., FERNANDES, J.F., MISSIONÁRIO, M., TRAVESSO, M., GROSSO, A.R., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Goby fish populations in intertidal environments: gene networks and epigenetic regulators modulating energy metabolism in response to seasonal warming and local climate regimes. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022.
  11. MISSIONÁRIO, M. (2022). Marine shallow waters as climate change hotspots - multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. UCIBIO BioSeminars. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), December 2022.
  12. Biomolecular Simulations in the Age of Information EUGLOH Research Conference "Global Health Challenges: Advances in E-Health” 2022/11/21 – (University of Lund, Sweden) (online)
  13. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  14. BioSIM - Application of Biomolecular Simulations in the Study of Biofilms Biofilms@UP – A Investigação em Biofilmes na Universidade do Porto 2022/09/15 – (University of Porto, Portugal)
  15. herapy for Genetic Diseases: The Computer as a Tool to Address Genetic Variability VirCo 2022 Meeting “Understanding genetics: a key to a Healthier GENEration” organized by the Portuguese Pharmaceutical Students’ Association (APEF) and by the Croatian Pharmacy and Medical Biochemistry Students Association (CPSA) and that 2022/05/21 (online)
  16. Employing Biomolecular Simulations for a Molecular Understanding of Human Diseases 2nd Workshop “From In Silico to Animal Models for the Study of Human Diseases” 2022/04/20 - University of Aveiro (Portugal)
  17. QM/MM Methods and Protein Ligand Docking: Fundamentals and Applications Ciclo de Seminários, M.Sc. in Computational Biology 2022/04/07 - Invited by Prof. Irina Moreira (Univ Coimbra, Portugal)
  18. Application of QM/MM Methods for Rational Enzyme Engineering of New Biocatalysts: Fighting the Three Demons Les Houches – TSRC Protein Dynamics CECAM Meeting 2022/05/23 – (Aussois, France)
  19. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  20. 2022/10/27 Bioseparation and Materials - Introduction to affinity ligands Pure Winter School 2022 University of Bayreuth (Bayreuth, Germany)

Proceeding in internation conferences

  1. Title: Distal edge determination for a multi-slat prompt-gamma camera: Irradiation with a 200-MeV proton beam
    • date: 2022-02-11
    • Authors: H. Simões, A. Morozov, J. Silva, J. Teodoro, P. Crespo
  2. Title: Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting
    • date: 2022-02-10
    • Authors: Sara Mesquita, Lília Perfeito, João Loureiro and Joana Gonçalves-Sá
    • Conference: NetSciX 2022 - International School and Conference on Network Science Porto, Portugal
  3. Title: Sensitivity to neutrinoless double beta decay of 136Xe with a third generation TPC dark matter experiment
    • date: 2022-06-01
    • Authors: A. Lindote and I. Olcina
    • Conference: Neutrino 2022, Seoul, Korea (virtual)
  4. Title: Neutrino physics with the LUX-ZEPLIN Detector
    • date: 2022-05-31
    • Authors: Paulo Brás (on behalf of LZ Collaboration)
    • Neutrino 2022 Seul,Coreia (virtual)
  5. Title: Deciphering Jet Quenching Effects with Novel Reclustering Tool
    • date: 2022-04-06
    • Authors: Liliana Apolinario, Pablo Rodriguez, Korinna Zapp
    • Conference: Quark Matter 2022 Krakow, Poland (remote)
  6. Title: Timing RPC for thermal neutron detection with 3D position sensitivity
    • date: 2022-09-26
    • Conference: XVI Workshop on Resistive Plate Chambers and Related Detectors CERN, 26–30 Sept 2022
  7. Title: Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  8. Title: Improving count rate capability of timing RPCs by increasing the detector working temperature
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  9. Title: Large Field CdTe Monitor for Astrophysics and TGF Science on board the Space Rider
    • date: 2022-11-07
    • Authors: R. M. Curado Da Silva, J. M. Maia, J. Sousa, P. Póvoa, J. Mingacho, G. Falcão, J. Gonçalves, G. Salgado, M. Moita
    • Conference: IEEE Nuclear Science Symposium Milano, Italy
  10. Title: Dual-Polarity Ion Drift Chamber: Experimental results with Xe-SF6 mixtures
    • date: 2022-05-22
    • Authors:
    • Conference: place:
  11. Title: Between even and odd: probing the CP-nature of the Higgs-Top Yukawa coupling date: 2022-07-08
    • conference: International Conference on High Energy Physics (ICHEP 2022) Bologna, Italy
  12. Title: The microevolution of information on social media
    • date: 2022-10-20
    • Authors: Lília Perfeito and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  13. Title: Flu or Not: A computational approach to respiratory-disease surveillance before and after COVID-19
    • date: 2022-10-20
    • Authors: Eleonora Tulumello, Sara Mesquita, Lilia Perfeito, Irma Varela-Lasheras and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  14. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • Conference: EPH - 15th European Public Health Conference 2022 Berlin, Germany
  15. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • conference: [3C] Cells, Computers & Clinics Oeiras, Portugal
  16. Title: Proton Multi-Beam FLASH Radiotherapy: Combining FLASH and IMPT
    • date: 2022-11-30
    • Authors: Joana Leitão, João Seco, Patrícia Gonçalves
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  17. Title: Monte Carlo Modeling of Inter-Track Radical Reactions for FLASH
    • date: 2022-11-30
    • Authors: Miguel Molina, Yujie Chi, T. Zhang, Patrícia Gonçalves and João Seco
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  18. Title: Simulation of a multi-slat prompt-gamma camera for proton beam distal edge determination during pelvic irradiation
    • date: 2022-11-05
    • Authors: J. Silva, H. Simões, A. Morozov, J. Teodoro, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italymulti-slat
  19. Title: Simulation of proton range monitoring in an anthropomorphic phantom using a multi-slat prompt-gamma camera
    • date: 2022-11-05
    • Authors: J. Teodoro, H. Simões, A. Morozov, J. Silva, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italy
  20. Title: Positron emission tomography for proton range verification in proton radiation therapy
    • date: 2022-11-05
    • Authors: S.P. Tavernier, R. Bugalho, F. Caramelo, J.P. Cesar, P.Crespo, J.C. Da Silva, L. Ferramacho, N. Ferreira, P. Gonçalves, D.Grosshans, B. Jesus, K.Klein, K. Lang, C. Layden, C. Leong, W. Matava,A. Mozorov, F. Poenisch, M. Proga, N. Sahoo, J. Seco, H. Simões, R.Silva, M. Silveira, J. Varela
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Nov. 5 - 12, Milano, Italy
  21. Dias, Ana; Moreira, Inês Pimentel; Lychko, Iana; Nurrito, Arianna; Barbosa, A.J.M.; Lutz-Bueno, Viviane; Mezzenga, Raffaele; et al. Corresponding author: Roque, Ana Cecília Afonso. "Hierarchical Self-Assembly of the Reflectin-Derived Protopeptide". Preprint. 2023. http://dx.doi.org/10.2139/ssrn.4406145. 10.2139/ssrn.4406145
  22. Studying mass generation for gluons Gernot Eichmann, Jan M. Pawlowski (selected for Editor's choice) SciPost Phys.Proc. 6 (2022) 018 https://doi.org/10.48550/arXiv.2112.08058

Posters (international meetings)

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022). Bioprospecting marine environments for unravelling novel drugs: Transcriptomics and interactome-directed analyses of two toxin-secreting Polychaeta. 1st Egas Moniz One Health Symposium.
  2. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., MISSIONÁRIO, M., FERNANDES, J.F., TRAVESSO, M., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Transcriptome profiling of the common goby Pomatoschistus microps exposed to seasonal warming reveals gene downregulation as an energy-saving mechanism to cope with thermal stress. 1st Egas Moniz One Health Symposium.
  3. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology.
  4. GONÇALVES, C., COSTA, P.M. (2022). Unravelling cephalopod venom glands through histological and transcriptomic approaches. Encontro Ciência’22.
  5. Barbosa, A.J.M.; Arianna Nurrito; Ana Margarida Dias; Soares, Cátia; Lychko, Iana; Roque, ACA. "Modeling studies of reflectin de novo peptide assembly". Paper presented in 15th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 2023.
  6. Carlos Costa; Barbosa, A.J.M.; Ana Margarida Dias; Roque, ACA. "Affinity reagents towards the SARS-CoV-2 spike protein". Paper presented in BPP2022 Biopartitioning & Purification Conference, 2022.

Posters (national meetings)

  1. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. (2022). Advances on the venom glands of Cephalopoda: Targets for the prospecting of novel bioactives. UCIBIO Scientific Advisory Board Meeting.
  2. Title: Detecting land-surface changes from space: Porting the Aqua Monitor application from Google Earth Engine
    • date: 2022-03-22
    • Authors: B. Backeberg, Z. Benta, M. David, G. Donchyts, J. Gomes, T.Gonçalves, J. Langemeijer, J. Pina, M. Viana
    • Conference: First Copernicus National Conference Évora, Portugal

Thesis / Dissertation

PhD Thesis

Finished

  1. On the measurement and interpretation of the fluxes of galactic cosmic-ray nuclei Eduardo Bueno (https://doi.org/10.33612/diss.253636377)
  2. Guilherme Guedes A global approach to physics beyond the Standard Model (https://hdl.handle.net/10481/76867)
  3. Ana Sofia Inácio Measurement of the 130 Te Two-Neutrino Double Beta Decay Half-life with the SNO+ Experiment
  4. Maria Ramos The interplay between collider and astrophysical probes of non-minimal composite Higgs models (https://digibug.ugr.es/bitstream/handle/10481/72877/95029%281%29.pdf?sequence=4)
  5. Correia, M.J. 2022. Tools for the management and conservation of the European eel (Anguilla anguilla): An application to Santo André lagoon. Faculdade de Ciências, Universidade de Lisboa, 203 pp. Submitted in May 2022.

Ongoing

  1. Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment

  2. Miguel Orcinha Estudo da modulação Solar no fluxo de raios cósmicos com dados da experiência AMS

  3. The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho (UL/FCUL)

  4. Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás (UL/IST)

  5. Developing Multi-Beam FLASH with Proton Beams Joana Leitão (UL/IST)

  6. Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira (UL/IST)

  7. Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado (UL/IST)

  8. Raios Cósmicos: desenvolvimento de módulos de divulgação através design participativo Luís Afonso

  9. Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco (UL/IST)

  10. Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues (UL/FCUL)

  11. Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes (UL/IST)

  12. Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares (UL/IST)

  13. Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves (UL/IST)

  14. Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes (U.Minho)

  15. Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe (UL/FCUL)

  16. Jetography in Heavy Ion Collisions André Cordeiro (UL/IST)

  17. AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza (U.Minho)

  18. Study of lepton universality in top quarks pairs events Giacomo Da Molin (UL/IST)

  19. Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa (UL/IST)

  20. The Partonic Structure of Hadrons Eduardo Ferreira (UL/IST)

  21. Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro (UL/IST)

  22. Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli (UL/FCUL)

  23. Differential tracking on disinformation websites and its impact on search engine results Íris Damião (UL/IST)

  24. Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud (U.Coimbra, IDPASC PT-CERN Call 2022/1)

  25. Beatriz C. Almeida, Ricardo S.V. Pires, Kristala L.J. Prather, and Alexandra T.P. Carvalho. The role of zing in transcription factor allosteric regulation.

  26. Ricardo D. González, Warispreet Singh, Lino Ferreira, and Alexandra T.P. Carvalho. Enzymatic synthesis of RNA-peptide conjugates as potential therapeutics for COVID-19.

  27. Inês Carvalho Leonardo (2020.08210.BD)

  28. 2021.07128.BD - Fábio Martins - Rational Development of Nanomedicines for Cardiovascular Diseases.

  29. 2020.09087.BD - Rita Magalhães - In Silico Optimization of Biocatalysts for Plastic Biodegradation.

  30. SFRH/BD/147276/2019 - Susana Maria da Fonseca Fernandes - Development of biocidal formulations for effective biofouling control.

  31. SFRH/BD/136594/2018 - André Figueiredo Pina - Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.

  32. SFRH/BD/137844/2018 - Claudia Tatiana Freitas Vieira - New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

  33. SFRH/BD/136746/2018 - Juliana Ferreira Rocha - Rational development of new biocatalysts for the production of Parkinson Disease Drugs.

  34. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.

Master Thesis

Finished

  1. João Antunes Particle reconstruction in large liquid scintillator detectors using charge and time signal modelization - the SNO+ neutrino physics experiment (UL/IST)
  2. Daniel Neacsu Dark matter searches at the LHC in models with extended scalar sectors
  3. Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
  4. Fátima Alcaso Design and optimisation of a xenon TPC with SiPM readout for neutrinoless double beta decay studies
  5. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
  6. António Oliveira Unsupervised machine learning techniques in high energy physics
  7. Beatriz Artur Impact of Quark-Gluon Plasma in Extensive Air Showers (https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/1972678479055537) )
  8. Rita Silva Optimisation studies for the pion-induced Drell-Yan measurement at the AMBER experiment (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502847)
  9. Henrique Neves From the Concept to Development of Astrophysics Payloads for Gamma Radiation Studies (U.Coimbra)
  10. Carlota Cardoso Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury (UL/IST )
  11. Francisco Barba Characterization of thin silicon strip detectors for nuclear experiments (UL/FCUL http://hdl.handle.net/10451/53658)
  12. André Torcato Heavy-baryon spectroscopy in a quark-diquark 1. approach (UL/FCUL http://hdl.handle.net/10451/51871)
  13. David Almeida PandeMedia: an annotated corpus of digital media for issue salience (UL/FCUL http://hdl.handle.net/10451/55576)
  14. Matilde Santos Caracterização e teste funcional de um micro dosímetro de fibras ópticas cintilantes (UL/FCUL http://hdl.handle.net/10451/53766)
  15. Nísia Fernandes Estudo da radiossensibilização de células tumorais do pâncreas com nanopartículas (http://hdl.handle.net/10451/51982)
  16. José Rodrigues Embedded systems for heating and machine learning in microcontrollers (U.Coimbra)
  17. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/left21/dissertacao/565303595502771)
  18. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502772)
  19. NUNES, M. (2022). Gene networks modulating heat acclimatization in common gobies: influence of latitude and season in fish metabolism and health. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Carolina Madeira and Pedro M. Costa.
  20. MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Pedro M. Costa and Ana Rita Grosso.
  21. Brandão, P.R. 2022. Portuguese estuarine systems and their essential ecological role for some fish species: trends and predictions in face of global changes. Mestrado em Ecologia Marinha, Universidade de Lisboa, Faculdade de Ciências. 61 pp.
  22. Santos, Gil, 2022. Activity patterns and tridimensional space use of the European catfish (Silurus glanis) on Belver reservoir.  Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 57 pp. http://hdl.handle.net/10451/51885
  23. Almeida, J. 2022. Trace Metals in the Sado Estuary and their implications on the Environmental Quality. Mestrado em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa, 103 pp. Submitted in July 2022.

Ongoing

  1. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  2. Carolina Felgueiras Simulations and benchmark of a fast neutron detector for nuclear astrophysics (UL/FCUL)
  3. Magda Duarte Development of high-resolution, three-dimensional muographies (U.Minho)
  4. Joana Vences Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations
  5. Simão Costa Quark hadronization with B mesons at the LHC (UL/IST)
  6. André Neves Astrofísica Multi-Mensageira com o Telescópio AMEGO da NASA (U.Coimbra)
  7. Francisca Santos Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission (UL/IST)
  8. Francisco Barreiro Geometrical aspects of jet quenching in small systems
  9. Manuel Mariano Sensitivity of jet sub-structure observables to jet quenching in collisions of light nuclei (UL/IST)
  10. Tomás Almeida Design of a phantom for radiobiology studies (UL/FCUL)
  11. Igor Gago Life prospection on Mars - Studing the Martian Subsurface Radiation Environment (UL/IST)
  12. João Pires Deep Neural Netwoers in Experimental Data Analyses (UL/FCUL)
  13. Milton Freitas Measurement of the number of muons in high occupancy MARTA stations (UL/IST)
  14. Lia Pereira Modelling protein amyloid structures and observing the effects of radiation using the GEANT4-DNA toolkit (UL/FCUL)
  15. João Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework (UL/FCUL)
  16. Tomás Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR
  17. Rita Pestana Development of a standard methodology for online dose calculation in air (UL/FCUL)
  18. Henrique Legoinha Probing the properties of the plasma of quarks and gluons with heavy flavour (UL/IST)
  19. Joana Reis Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider (UL/FCUL)
  20. Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT (UL/FCUL)
  21. Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC (U.Coimbra)
  22. Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0𝝂2β decay of Xe-136 (U.Coimbra)
  23. Gulherme Calé Jet jet correlations in QCD (UL/FCUL)
  24. Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider (U.Minho)
  25. José Cordeiro Development of an FPGA-accelerated clustering for the ATLAS trigger system (UL/IST)
  26. Catarina Pereira Performance of the TileCal High Voltage Upgrade System (UL/FCUL)
  27. Pedro Lagarelhos Prospects for the HL-LHC of the measurement of the top quark couplings in the ttbar semileptonic channel (UL/IST)
  28. Ana Campos Estudo da dispersão de partículas alfa em filmes finos (UL/FCUL)
  29. Guilherme Crispim Pre-equilibrium of the Quark-Gluon Plasma (UL/IST)
  30. Miguel Lopes Integration of the HiRezBrainPET with a clinical PET/CT system - Image performance evaluation of a prototype for next-generation brain tomography (UL/IST)
  31. Maria Borges Beam tests of a scintillation array detector for high-resolution dosimetry (UL/IST)
  32. Fábio Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro (UL/FCUL)
  33. Marco Leitão Disentangling QGP response using energy flow correlators (UL/IST)
  34. António carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans (U.Coimbra)
  35. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  36. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST)
  37. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST)
  38. Ana Filipa Fernandes (MSc in Biotechnology / FCT-NOVA)

Patents

  1. EP21306547 / BNT231376EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, S. Routier - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (Indole derivaties) 04 November 2021
  2. EP21306521 / BNT231394EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, M. Teulade-Fichou, R. Lartia, G. Bordeau - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (triphenylamine derivatives) 29 October 2021
  3. Alexandra T.P. Carvalho, Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek J. Quinn, Thomas S. Moody, Andreia F. Sousa, and Armando J.D. Silvestre. Novel Variants of Hyperthermophilic Carboxylesterase for Polymer Synthesis (PCT/IB2022/051111) 2022.

Datasets

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Glycera alba. Direct submission to GenBank – Accession OL606744
  2. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Serine protease inhibitor Kazal-type from Glycera alba. Direct submission to GenBank – Accession OL606745
  3. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich secretory protein from Hediste diversicolor. Direct submission to GenBank – Accession OL606746
  4. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Thyrostimulin beta-5 subunit from Hediste diversicolor. Direct submission to GenBank – Accession OL606747
  5. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Glycera alba. Direct submission to GEO – Accession GPL31947
  6. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Hediste diversicolor. Direct submission to GEO – Accession GPL31948
  7. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Sepia officinalis. Direct submission to GenBank - Accession number: OP198203 (under publication embargo)
  8. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. SE-cephalotoxin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198204 (under publication embargo)
  9. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Venom Insulin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198205 (under publication embargo)
  10. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209720 (under publication embargo)
  11. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein (latisemin-like) from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209721 (under publication embargo)
  12. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Chitinase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209722 (under publication embargo)
  13. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Hyaluronidase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209723 (under publication embargo)
  14. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Cysteine-rich venom protein from Eulalia sp. Direct submission to GenBank – Accession OP254189 (under publication embargo)
  15. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12A from Eulalia sp. Direct submission to GenBank – Accession OP254190 (under publication embargo)
  16. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12B from Eulalia sp. Direct submission to GenBank – Accession OP254191 (under publication embargo)
  17. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M13 from Eulalia sp. Direct submission to GenBank – Accession OP254192 (under publication embargo)
  18. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Serine protease from Eulalia sp. Direct submission to GenBank – Accession OP254193 (under publication embargo)
  19. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Hyaluronidase from Eulalia sp. Direct submission to GenBank – Accession OP254194 (under publication embargo)

2021

Journal Paper with direct contribution

  1. de Almeida, Duarte Sampaio Belchior. Urban Tourism Crowding Dynamics: Carrying Capacity and Digital Twinning. Diss. ISCTE-Instituto Universitario de Lisboa (Portugal), 2021. https://www.proquest.com/openview/e302b10227ebcf57af55fb137348500c/1?pq-origsite=gscholar&cbl=2026366&diss=y
  2. Almeida, Beatriz C., et al. "Transcription factor allosteric regulation through substrate coordination to zinc." NAR genomics and bioinformatics 3.2 (2021): lqab033. https://doi.org/10.1093/nargab/lqab033
  3. Silva, João Manuel, et al. "Burden of Liver Cirrhosis in Portugal between 2010 and 2017." GE-Portuguese Journal of Gastroenterology 28.3 (2021): 153-161. https://doi.org/10.1159/000510729
  4. Cabrita, Alexandra, et al. "Multiple pathways to homothallism in closely related yeast lineages in the Basidiomycota." Mbio 12.1 (2021): e03130-20. https://doi.org/10.1128/mBio.03130-20
  5. Fortunato, A. B., et al. "Sediment dynamics and morphological evolution in the Tagus Estuary inlet." Marine Geology 440 (2021): 106590. https://doi.org/10.1016/j.margeo.2021.106590
  6. Figueiredo, Pedro R., Ricardo D. González, and Alexandra TP Carvalho. "Human Carboxylesterase 2 in Cocaine Metabolism." Molecular Catalysis 515 (2021): 111938. https://doi.org/10.1016/j.mcat.2021.111938
  7. Figueiredo, Pedro R., et al. "Introduction of a Glycine Linker Connecting the Heavy and Light Chains in Synthetic Cardosin B-Derived Rennet Changes the Specificity of Subpocket S3′." The Journal of Physical Chemistry B 125.17 (2021): 4368-4374. https://doi.org/10.1021/acs.jpcb.1c01826
  8. Pinto, R., Sobral, D., Grosso, A.R. (2021). Comprehensive Detection of Pseudogenes Transcribed by Readthrough. In: Poliseno, L. (eds) Pseudogenes. Methods in Molecular Biology, vol 2324. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1503-4_6
  9. Crispim Romão, M., Castro, N.F., Milhano, J.G. et al. Use of a generalized energy Mover’s distance in the search for rare phenomena at colliders. Eur. Phys. J. C 81, 192 (2021). https://doi.org/10.1140/epjc/s10052-021-08891-6
  10. Another look at the three-gluon vertex in the minimal Landau gauge, Guilherme T.R. Catumba (Coimbra U. and Valencia U., IFIC), Orlando Oliveira (Coimbra U.), Paulo J. Silva (Coimbra U.) https://doi.org/10.22323/1.396.0467
  11. PTPARL-D: an annotated corpus of forty-four years of Portuguese parliamentary debates Paulo Almeida, Manuel Marques-Pita, and Joana Gonçalves-Sá Corpora 2021 16:3, 337-348 https://www.euppublishing.com/doi/full/10.3366/cor.2021.0226
  12. Borges, Sousa et al, 2021 (Eurosurveillance); https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2021.26.10.2100130
  13. Borges, Isidro et al, 2021 (Viruses); https://www.mdpi.com/1999-4915/13/4/604
  14. Borges, Isidro, Trovão et al, 2021 (pre-print in medRxiv); https://www.medrxiv.org/content/10.1101/2021.02.22.21252216v1
  15. Borges et al, 2021 (pre-print in Virological.org); https://virological.org/t/long-term-evolution-of-sars-cov-2-in-an-immunocompromised-patient-with-non-hodgkin-lymphoma/621
  16. Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  17. RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  18. RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  19. S. Aune, J. Bortfeldt, F. Brunbauer, C. David, D. Desforge, G. Fanourakis, M. Gallinaro, F. García, I. Giomataris, T. Gustavsson, F.J. Iguaz, M. Kebbiri, K. Kordas, C. Lampoudis, P. Legou, M. Lisowska, J. Liu, M. Lupberger, O. Maillard, I. Maniatis, I. Manthos, H. Müller, E. Oliveri, T. Papaevangelou, K. Paraschou, M. Pomorski, B. Qi, F. Resnati, L. Ropelewski, D. Sampsonidis, L. Scharenberg, T. Schneider, L. Sohl, M. van Stenis, A. Tsiamis, Y. Tsipolitis, S.E. Tzamarias, A. Utrobicic, R. Veenhof, X. Wang, S. White, Z. Zhang, Y. Zhou, Timing performance of a multi-pad PICOSEC-Micromegas detector prototype, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment,Volume 993, 2021, https://doi.org/10.1016/j.nima.2021.165076
  20. Rodrigues M, Martins R, Rogeiro J, Fortunato AB, Oliveira A, Cravo A, Jacob J, Rosa A, Azevedo A, Freire P. 2021 (in press). A web-based observatory for biogeochemical assessment in coastal regions, Journal of Environmental Informatics.
  21. Rodrigues, M., A. Rosa, A. Cravo, Jacob, J., Fortunato, A.B. 2021 (in press). Effects of Climate Change and anthropogenic pressures in the water quality of a coastal lagoon (RIa Formosa, Portugal), Science of the Total Environment.
  22. Rato, A.S., Alexandre, C.M., Almeida, P.R., Costa, J.L., Quintella, B.R. 2021. Effects of hydropeaking on the behaviour, fine-scale movements and habitat selection of an Iberian cyprinid fish. River Research and Applications
  23. Sroczyńska, K., A. Conde, P. Chainho & H. Adão (2021). How nematode morphometric attributes integrate with taxonomy-based measures along an estuarine gradient. Ecological Indicators 124: 107384. https://doi.org/10.1016/j.ecolind.2021.107384
  24. Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  25. MODELING THE IMPACTS OF HARBOR DREDGING AND DISPOSAL ON COASTAL WATER-LEVELS AND RUN-UP WITH XBEACH, Coastal Dynamics Conference, 28 June-2 July 2021.
  26. Pereira, C., Maranha, J. R. e Cardoso R. (2021). A general mathematical framework for modelling soil-water retention behaviour. 3rd Pan-American Conference on Unsaturated Soils, Rio de Janeiro, Brazil (aceite para publicação).
  27. CRAVO A., ROSA A., RODRIGUES M. (2020). Effects of climate change and anthropogenic pressures in the water quality of the Ria Formosa (Portugal). XX Seminário Ibérico de Química Marina - SIQUIMAR 2020, 1 pp.
  28. Mendes, Lourenço S.; Lara, Javier L.; Viseu, Maria T. 2021. "Is the Volume-of-Fluid Method Coupled with a Sub-Grid Bubble Equation Efficient for Simulating Local and Continuum Aeration?" Water 13, no. 11: 1535.
  29. Balduíno César Mateus,Mateus Mendes,José Torres Farinha nd António Marques Cardoso "Anticipating Future Behavior of an Industrial Press Using LSTM Networks" Appl. Sci. 2021, 11(13), 6101; https://doi.org/10.3390/app11136101
  30. Paolillo, A., Sinval, J., Silva, S. A., & Scuderi, V. E. (2021). The relationship between inclusion climate and voice behaviors beyond social exchange obligation: The role of psychological needs satisfaction. Sustainability, 13(18), 1-19. https://doi.org/10.3390/su131810252
  31. Balduino Mateus, Mateus Mendes, José Torres Farinha, António Marques Cardoso, Data Analysis for Predictive Maintenance Using Time Series and Deep Learning Models – A Case Study in a Pulp Paper Industry, in Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
  32. João Rodrigues, José Torres Farinha, António Marques Cardoso1 and Mateus Mendes, Prediction of Sensor Values in Paper Pulp Industry Using Neural Networks, Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
  33. Pais, P., Oliveira, J., Almeida, V., Yilmaz, M., Monteiro, P.T., Teixeira, M.C. “Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host survival and probiotic activity based on promoter sequence variability”. Genomics, 113(2): 530-539, 2021.
  34. Mendes S, et al. (2021) Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. HEREDITY https://doi.org/10.1038/s41437-021-00466-1.
  35. Clemente F, et al. (2021) The genomic history of the Aegean palatial civilizations CELL 184: P2565-2586.e21 https://doi.org/10.1016/j.cell.2021.03.039
  36. Palma JHN, 2017, CliPick – Climate change web picker. A tool bridging daily climate needs in process based modelling in forestry and agriculture, Forest Systems [S.l.], v. 26, n. 1, p. eRC01, may 2017. ISSN 2171-9845. https://doi.org/10.5424/fs/2017261-10251
  37. SANTOS, M.L., D’AMBROSIO, M., RODRIGO, A.P., PAROLA, A.J. & COSTA, P.M. (2021). A transcriptomic approach to the metabolism of tetrapyrrolic photosensitizers in a marine annelid. Molecules 26, 3924. (doi: 10.3390/molecules26133924).
  38. RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  39. RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  40. Assessing the effects of PMM2 variants on protein stability Quelhas, D., Carneiro, J., Lopes-Marques, M., Jaeken, J., Martins, E., Rocha, J.F., Teixeira Carla, S.S., Ferreira, C.R., Sousa, S.F., Azevedo, L. (2021) Molecular Genetics and Metabolism, 134 (4), pp. 344-352. DOI: 10.1016/j.ymgme.2021.11.002
  41. In silico identification of possible inhibitors for protein kinase B (PknB) of mycobacterium tuberculosis Vieira, T.F., Martins, F.G., Moreira, J.P., Barbosa, T., Sousa, S.F. (2021) Molecules, 26 (20), art. no. 6162, .
  42. Structure and thermodynamics of empty clathrate hydrates below the freezing point of water† Fernando J. A. L. Cruz  *a and José P. B. Motaa Phys. Chem. Chem. Phys., 2021,23, 16033-16043 https://doi.org/10.1039/D1CP00893E
  43. The milk-derived lactoferrin inhibits V-ATPase activity by targeting its V1 domain Santos-Pereira, C., Rocha, J.F., Fernandes, H.S., Rodrigues, L.R., Côrte-Real, M., Sousa, S.F. (2021) International Journal of Biological Macromolecules, 186, pp. 54-70. DOI: 10.1016/j.ijbiomac.2021.06.200
  44. Compensatory epistasis explored by molecular dynamics simulations Serrano, C., Teixeira, C.S.S., Cooper, D.N., Carneiro, J., Lopes-Marques, M., Stenson, P.D., Amorim, A., Prata, M.J., Sousa, S.F., Azevedo, L. (2021) Human Genetics, 140 (9), pp. 1329-1342. DOI: 10.1007/s00439-021-02307-x
  45. The complete catalytic mechanism of xanthine oxidase: A computational study Ribeiro, P.M.G., Fernandes, H.S., Maia, L.B., Sousa, S.F., Moura, J.J.G., Cerqueira, N.M.F.S.A. (2021) Inorganic Chemistry Frontiers, 8 (2), pp. 405-416. DOI: 10.1039/d0qi01029d
  46. The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina, A.F., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) ChemBioChem, DOI: 10.1002/cbic.202100555
  47. New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes, H.S., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) Molecular Diversity DOI: 10.1007/s11030-021-10259-7
  48. Identification of new potential inhibitors of quorum sensing through a specialized multi-level computational approach Martins, F.G., Melo, A., Sousa, S.F. (2021) Molecules, 26 (9), art. no. 2600 DOI: 10.3390/molecules26092600
  49. Morgado P., L. Cavique (2021), Seleção de atributos usando LAID e sua implementação em sistemas de computação de alto desempenho, Revista de Ciências da Computação n.16, pp. 93-112.
  50. Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
  51. Light Higgs searches in t(t)over-bar phi production at the LHC Duarte Azevedo, Rodrigo Capucha, Emanuel Gouveia, Antonio Onofre, Rui Santos J. High Energy Phys. 4 (2021) 77 Jrn-Dir 2021-04-09 10.1007/JHEP04(2021)077
  52. Measurement of the associated production of a Higgs boson decaying into b-quarks with a vector boson at high transverse momentum in pp collisions at \sqrt(s)=13TeV with the ATLAS detector ATLAS Collaboration (2927 authors) Phys. Lett. B 816 (2021) 136204 Jrn-Dir 2021-04-27 10.1016/j.physletb.2021.136204
  53. A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
  54. Configuration and performance of the ATLAS b-jet triggers in Run 2 ATLAS Collaboration Eur. Phys. J. C 81 (2021) 1087 Jrn-Dir 2021-12-01 10.1140/epjc/s10052-021-09775-5
  55. Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
  56. Measurement of the Fluctuations in the Number of Muons in Extensive Air Showers with the Pierre Auger Observatory Pierre Auger Collaboration (360 authors) Phys. Rev. Lett. 126 (2021) 152002 Jrn-Dir 2021-04-16 10.1103/PhysRevLett.126.152002
  57. Timing performance of a multi-pad PICOSEC-Micromegas detector prototype M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165076 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165076
  58. Modeling the timing characteristics of the PICOSEC Micromegas detector J. Bortfeldt et al. (41 authors) Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165049 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165049
  59. Measurement of the CP-violating phase phi(s) in the B-s(0) -> J/psi phi(1020) -> mu(+)mu-K+K- channel in proton-proton collisions at root s=13 TeV CMS Collaboration (2307 authors) Phys. Lett. B 816 (2021) 136188 Jrn-Dir 2021-05-10 10.1016/j.physletb.2021.136188
  60. Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. arXiv:2106.01393 Jrn-Dir 2021-06-02
  61. Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector CMS MTD Collaboration (199 authors) J. Instrum. 16 (2021) P07023 Jrn-Dir 2021-07-01 10.1088/1748-0221/16/07/P07023
  62. Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector D. Bastos, M. Gallinaro, T. Niknejad, J.C. Silva, J. Varela, et al. JINST 16 (2021) P07023 Jrn-Dir 2021-07-15
  63. Observation of B0s mesons and measurement of the B0s/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration arXiv:2109.01908 Jrn-Dir 2021-09-04
  64. Advances in Multi-Variate Analysis Methods for New Physics Searches at the Large Hadron Collider M. Gallinaro, G. Strong, J. Varela, et al. Rev.Phys. 7 (2021) 100063 Jrn-Dir 2021-11-06
  65. Improving sensitivity to low-mass dark matter in LUX using a novel electrode background mitigation technique D. S. Akerib et al. Phys. Rev. D 104, 012011 Jrn-Dir 2021-07-19 https://doi.org/10.1103/PhysRevD.104.012011
  66. Projected sensitivity of the LUX-ZEPLIN experiment to the two neutrino and neutrinoless double beta decays in Xe-134 D. S. Akerib et al. Phys. Rev. C 104 (2021) 065501 Jrn-Dir 2021-12-10 https://doi.org/10.1103/PhysRevC.104.065501
  67. Simulation of 125 I Auger emission spectrum with new atomic parameters from MCDHF calculations J.M. Sampaio, J. Ekman, B.P.E. Tee, R. du Rietz, B.Q. Lee, M.S. Pires, P. Jönsson, T. Kibédi , M. Vos , A.E. Stuchbery, and  J.P. Marques J. Quant. Spectr. Rad. Tranf. 227, 107964 (2022) Jrn-Dir 2021-10-12 10.1016/j.jqsrt.2021.107964
  68. Optical readout studies of the Thick-COBRA gaseous detector F. Garcia, F.M. Brunbauer, M. Lisowskac, H. Müller, E. Oliveri, D. Pfeiffer, L. Ropelewski, J. Samarati, F. Sauli, L. Scharenber, A.L.M. Silva, M. van Stenis, R. Veenhof and J.F.C.A. Veloso JINST 16 (2021) T01001 Jrn-Dir 2021-01-07 10.1088/1748-0221/16/01/T01001
  69. Operation of a novel large area, high gain, single stage gaseous electron multiplier F.D. Amaro, R. Roque, N.V. Duarte, A. Cortez, and J.A. Mir Journal of Instrumentation 16 (2021) P01033 Jrn-Dir 2021-01-27 10.1088/1748-0221/16/01/P01033
  70. Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS A. Oliveira, A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, P. Lopes Anabela Oliveira, André B. Fortunato, Marta Rodrigues, Alberto Azevedo, João Rogeiro, Samuel Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, Pedro Lopes, Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, Volume 143, 2021 Jrn-Dir 2021-06-13 10.1016/j.envsoft.2021.105132
  71. New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories R. Conceição, L. Peres, M. Pimenta, B. Tomé Eur. Phys. J. C 81, 80 (2021) Jrn-Dir 2021-01-25 10.1140/epjc/s10052-021-08883-6
  72. Muon identification in a compact single-layered water Cherenkov detector  and gamma/hadron discrimination using Machine Learning techniques R. Conceição, B. S. González, A. Guillén, M. Pimenta and B.  Tomé Eur. Phys. J. C 81, 542 (2021) Jrn-Dir 2021-05-13 10.1140/epjc/s10052-021-09312-4
  73. The SNO+ Experiment M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P08059 (2021) Jrn-Dir 2021-08-25 10.1088/1748-0221/16/08/P08059
  74. Optical calibration of the SNO+ detector in the water phase with deployed sources M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P10021 Jrn-Dir 2021-10-19 10.1088/1748-0221/16/10/P10021
  75. Quark Mass Function from an OGE-type Interaction in Minkowski Space E. P. Biernat, F. Gross, M. T. Peña, A. Stadler, S. Leitão Acta Phys. Polon. Supp. 14 (2021) 9 Jrn-Dir 2021-01-01 10.5506/APhysPolBSupp.14.9
  76. Fundamental Parameters Related to Selenium Kα and Kβ Emission X-Ray Spectra Mauro Guerra, Jorge M. Sampaio, Gonçalo R. Vília, César A. Godinho, Daniel Pinheiro, Pedro Amaro, José P. Marques, Jorge Machado, Paul Indelicato, Fernando Parente, José Paulo Santos Atoms 9,8 (2021) Jrn-Dir 2021-01-22 10.3390/atoms 9010008
  77. Peeling graphite layer by layer reveals the charge exchange dynamics of ions inside a solid Anna Niggas, Sascha Creutzburg, Janine Schwestka, Benjamin Wöckinger, Pedro L. Grande, Bernhard C. Bayer, José P. Marques, Friedrich Aumayr, Robert Bennett, Richard A. Wilhelm Communications Physics 4, 1801 (2021). Jrn-Dir 2021-08-12 10.1038/s42005-021-00686-1
  78. NeuLAND: The high-resolution neutron time-of-flight spectrometer for R3B at FAIR K. Boretzky, I. Gasparic, M. Heil, et al. Nucl. Instr. and Methods A 1014, 165071 (2021) Jrn-Dir 2021-10-21 10.1016/j.nima.2021.165701
  79. The large COMPASS polarized solid ammonia target for Drell–Yan measurements with a pion beam V. Andrieux, C. Pires, C. Quintans et al NIM A 1025 (2022) 166069 Jrn-Dir 2021-12-10 https://doi.org/10.1016/j.nima.2021.166069
  80. Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
  81. Running in the ALPs M. Chala, G. Guedes, M. Ramos and J. Santiago Eur. Phys. J. C (2021) 81: 181 Jrn-Dir 2021-02-23 10.1140/epjc/s10052-021-08968-2
  82. Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
  83. New leptons with exotic decays: collider limits and dark matter complementarity Guilherme Guedes, José Santiago arXiv:2107.03429 Jrn-Dir 2021-07-09
  84. Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
  85. Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
  86. Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
  87. A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
  88. Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
  89. A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 Jrn-Dir 2022-01-14 DOI: 10.1126/sciadv.abm4234
  90. Fortunato, A.B., P. Freire, B. Mengual, X. Bertin, C. Pinto, K. Martins, T. Guérin, A. Azevedo 2021.Sediment dynamics and morphological evolution in the Tagus Estuary inlet, Marine Geology, 440: 106590. DOI: 10.1016/j.margeo.2021.106590
  91. Oliveira, A., A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardes, L. Lavaud, X. Bertin, A. Nahon, G. Jesus, M. Rocha, P. Lopes 2021. Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, 143: 105132. DOI: 10.1016/j.envsoft.2021.105132
  92. Rocha, M; Oliveira, A.; Freire, P.; Fortunato, A.B.; Nahon, A.; Barros, J.L.; Azevedo, A.; Oliveira, F.S.B.F.; Rogeiro, J.; Jesus, G.; Martins, R.J.; Santos, P.P.; Tavares, A.O.; Oliveira, J. 2021. Multi-Hazard WebGIS Platform for Coastal Regions, APPLIED SCIENCES-BASEL, 11/11: 5253, DOI: 10.3390/app11115253
  93. Rodrigues, M., R. Martins, J. Rogeiro, A. B. Fortunato, A. Oliveira, A. Cravo, J. Jacob, A. Rosa, A. Azevedo, P. Freire 2021. A Web-Based Observatory for Biogeochemical Assessment in Coastal Regions, Journal of Environmental Informatics, 38/1: 1.15. DOI:10.3808/jei.202100450
  94. Fassoni-Andrade, A. C., Durand, F., Moreira, D., Azevedo, A., dos Santos, V. F., Funi, C., and Laraque, A.: Comprehensive bathymetry and intertidal topography of the Amazon estuary, Earth Syst. Sci. Data, 13, 2275–2291, https://doi.org/10.5194/essd-13-2275-2021, 2021.

Thesis / Dissertation

PhD Thesis

Finished

  1. RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
  2. Henrique Silva Fernandes Título: Computational studies addressed to PLP-Dependent enzymes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
  3. Carla Sílvia Silva Teixeira Título: Computational studies addressed to multifunctional enzyme complexes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
  4. Cátia Sofia dos Santos Pereira Novel insights on the interaction of lactoferrin with proton pumping ATPases towards understanding its antifungal and anticancer activities Programa Doutoral em Biologia Molecular e Ambiental Molecular (PDBMA), Univ Minho Concluída em Setembro de 2021
  5. RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
  6. Ana Paula Pereira Peixoto Search for new interactions in the top quark sector CERN-THESIS-2021-149.pdf
  7. Emanuel Demétrio Mendes Gouveia Universidade do Minho Escola de Ciências Tese de Doutoramento Física Agosto de 2021 Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment at the LHC
  8. Holography, QCD and Regge Theory Artur Jorge Carvalho Amorim de Sousa (https://hdl.handle.net/10216/136375)
  9. PhD thesis of Paulo Braz, "Sensitivity to the 0νββ decay of 136Xe and development of Machine Learning tools for pulse classification for the LUX-ZEPLIN experiment”
Ongoing
  1. GONÇALVES, C. (2019-present). Coleoid venoms: Predicting cephalotoxin function and biotechnological applications from ecological and evolutionary traits. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (January 2019). FCT grant ref. SFRH/BD/144914/2019
  2. 2021.07128.BD
  3. 2020.09087.BD
  4. MARTINS, C. (2017-present). Carcinogenic toxicants and emerging pollutants. A comprehensive case-study on toxicant interactions in vivo and in vitro: from Molecular Toxicology to Environmental Risk Assessment. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (September 2017). FCT grant ref. SFRH/BD/120030/2016
  5. Inês Raquel Carvalho Leonardo 2020.08210.BD Tecnologias Agrárias e Alimentares Portugal Universidade Nova de Lisboa
  6. 2021.07128.BD Rational Development of Nanomedicines for Cardiovascular Diseases.
  7. 2020.09087.BD In Silico Optimization of Biocatalysts for Plastic Biodegradation.
  8. SFRH/BD/147276/2019 Development of biocidal formulations for effective biofouling control.
  9. SFRH/BD/136594/2018 Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.
  10. SFRH/BD/137844/2018 New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

Master Thesis

Finished

  1. Phytoplankton community in the Algarve coastal region: implications to aquaculture production. MSc Thesis in Ciências do Mar. Universidade de Lisboa

  2. CABRAL, I. (2020-present). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: submitted.

  3. SANTOS, M.L. (2021). A transcriptomic approach to the metabolism of porphyrin-like pigments in a marine Polychaeta (Eulalia sp.). M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. 43 pp. + Appendix. Final status: Approved. Classification: 18 (0-20).

  4. GROU, M. (2021). A molecular and pathophysiological approach to tissue regeneration in the planarian model. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 40 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).

  5. PIMPÃO, A. (2021). Novel developments on the association of the AHR-CYP1A1 axis and arterial hypertension related to obstructive sleep apnea. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica (in collaboration with NOVA Medical School), Universidade Nova de Lisboa, Monte de Caparica, 77 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).

  6. Mestrado Informação e Sistemas Empresariais, Univ. Aberta/IST da dissertação intitulada "Feature Selection using LAID and its Implementation on High-Performance Computing Systems" de Paulo Morgado, orientado por L. Cavique e defendido em novembro 2021.

  7. P. Xavier and N. Galambaa) Effect of urea on the hydration and aggregation of hydrophobic and amphiphilic solute models: Implications to protein aggregation J. Chem. Phys. 155, 144501 (2021); https://doi.org/10.1063/5.0064707

  8. Manghnani, K. (2021) Extraction and Visualization of Fake News Indicators (Tese de mestrado) - Instituto Superior Técnico, Universidade de Lisboa. Lisboa, Portugal.

  9. Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.

  10. "A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)

  11. Mestrado Bolonha em Bioengenharia e Nanossistemas, IST/LISBOA "Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics" Gabriel Nascimento Serafim

  12. Mariana Luz, Projecto de mestrado com o titulo: "Assessing the Prevalence of Transcription Readthrough in healthy tissues through computational approaches", Mestrado em Genetica Molecular e Biomedicina, FCT-NOVA;

  13. Valerio Fiori, Projecto de mestrado com o titulo: "Finding Biomarkers of Metastatic Potential in Colorectal Cancer", Mestrado em Bioinformatica e Biologia Computacional, FCUL

  14. B. Oliveira, "High-Pressure He/H2/O2 Mixtures Combustion on the ESTHER Driver: Experiment and Modeling", Ms.C. Thesis, Eng. Aeroespacial, Instituto Superior Técnico, Universidade de Lisboa.

  15. Ricardo Silva (2021), Atomic structure calculations in lanthanide ions relevant to kilonovae,FCUL

  16. André Cordeiro, Towards the space-time picture of a QCD parton shower, IST

  17. Filipa Baltazar (2021), A Monte Carlo based study of the FLASH effect in radiotherapy with protons, IST

  18. Miguel Martins, Measurement of the features of muon number distribution using MARTA engineering array, IST

  19. Alexandra Fernandes, Measurement of the features of muon number distribution using MARTA engineering array, mestrado em Astronomia e Astrofisica da universidade do Porto

  20. Pedro Costa, Detection of astrophysical neutrinos with a gamma-ray observatory, IST

  21. Laura Peres, A novel energy reconstruction for high-energy gamma-ray wide field of view observatories, IST

  22. Eduardo Ferreira, From light-front wave functions to parton distribution functions, IST MEFT

  23. Nuno Fernandes, Development of GPU-Accelerated Trigger Algorithms for the ATLAS Experiment at the LHC, Mestrado em Engenharia Física Tecnológica IST

  24. Maria Faria, Investigating the flavour anomalies through the rare beauty decay B0→K∗0μ+μ−, IST MEFT

  25. Beatriz Pinheiro Pereira, Radiation damage of the optical components of the ATLAS TileCal calorimeter at the High-Luminosity LHC, IST MEFT

Conference Paper

  1. J. Varela on behalf of the TOFHIR2 design team, TOFHIR2: The readout ASIC of the CMS Barrel MIP Timing Detector, CMS CR-2021/001

  2. Anabela Oliveira, Alberto Azevedo, André B. Fortunato, Marta Rodrigues, João Rogeiro, Pedro Lopes, Samuel Bernardo, Jorge Gomes, João Pina, Mario David, 2021 (in press). OPENCoastS: a tailored coastal forecasting WebGIS service, Proceedings of the 3rd Conference of the Arabian Journal of Geosciences, 4 pp.

  3. “Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.

  4. “A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.

  5. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.

  6. GONÇALVES, C., MOUTINHO CABRAL, I., RODRIGO, A.P., FONSECA,D., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A stinging issue: omics and computational tools for the bioprospecting of novel marine toxins. XII European Conference on Marine Natural Products. National University of Ireland, Galway (Ireland), August 2021.

  7. MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. Jornadas Intercalares das Dissertações Anuais dos Mestrados dos Departamentos de Química e Ciências da Vida 2021. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), February 2021.

  8. Deciphering the interaction of lactoferrin with V-ATPase towards a deeper understanding of its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  9. Structure-based Virtual Screening, Molecular Dynamics and Free Energy calculations for the identification of novel inhibitors against biofilm formation by C.violaceum Fábio G. Martins, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  10. Structure-based Virtual Screening,Molecular Dynamics and Free Energy calculations for the identification of New Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal

  11. Specialized multi-level computational approach for the identification of novel quorum sensing inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa The 24th meeting of the International Society for Molecular Recognition, Affinity 2021 22-24 June 2021, Lisboa, Portugal (online)

  12. Identification of potential quorum sensing inhibitors through structure-based virtual screening, molecular dynamics, and free energy calculations Fábio G. Martins, André Melo, Sérgio F. Sousa e-Conference on Innovation in Microbial Control, October 7-8 2021, Porto, Portugal (online)

  13. Targeting the PQS system: Discovery of New Quorum Sensing Inhibitors for P. aeruginosa through an in silico methodology Tatiana F. Vieira, Rita P. Magalhães, Manuel Simões, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)

  14. Machine Learning Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)

  15. Using Biomolecular Simulations to Understand the Enzymatic Activity of Xanthine Oxidase Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira BioSeminars@UCIBIO July 21st 2021, Lisbon, Portugal (Online)

  16. Exploring the Nitrate and Nitrite Reductase Activity of Xanthine Oxidase – a QM/MM study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira 12th Molybdenum and Tungsten Enzymes Conference (MoTEC 2021) September 28th to October 1st 2021, Marseille, France (Online)

  17. The Nitrate and Nitrite Reductase Activity of Xanthine Oxidase: a Computational Study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira XXI SPB National Congress of Biochemistry October 14th to 16th 2021, Universidade de Évora, Évora, Portugal (Online) Note: Award Best Oral Communication

  18. Developed of Inverted Virtual Screening Approaches for the Identification of Protein Targets Associated to the Biological Activity of Specific Molecules Tatiana F. Vieira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  19. A multidisciplinary approach to untangle the mechanisms behind the antifungal activity of lactoferrin Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real 15th International Conference on Lactoferrin: Structure, Function and Applications December 6-10th 2021, Beijing, China (online)

  20. Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family: a step further to assure food safety and quality Inês CARVALHO LEONARDO, Martijn STAATS, Marleen VOORHUIJZEN, Valerie VAN DER VORST, Bas FRONEN, Jorge CAPELO, Maria Teresa BARRETO CRESPO, Frédéric BUSTOS GASPAR November 2021 ISEKI e-conference 2021 - Food Texture, Quality, Safety and Biosecurity in the Global Bioeconomy Online (Austria)

  21. Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family for food safety and quality assurance Inês Carvalho Leonardo, Martijn Staats, Marleen Voorhuijzen, Valerie van der Vorst, Bas Fronen, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  22. Two-particle Correlations in multi-Regge Kinematics, N. B. de Leon, G. Chachamis and A. S. Vera, arXiv:2112.13794 [hep-ph]; contribution to Low-x workshop 2021

  23. New results on the modification of jet structure in Heavy Ion collisions, Helena Santos, on behalf of the ATLAS, ALICE and CMS Collaborations, PoS(LHCP2021)082, https://doi.org/10.22323/1.397.0082

  24. Rare heavy-flavour decays, A. Boletti (on behalf of the ATLAS, CMS, and LHCb Collaborations), PoS(LHCP2021)139

  25. Comparison of Voxel S-values and Monte Carlo Simulation in [177Lu]Lu-DOTA-TATE Quantification for Patient-Specific Dosimetry, Rodrigues, C., Ferreira, P., Oliveira, F. P. M., Silva, Â., Peralta, L., Costa, D. C., Eur J Nucl Med Mol Imaging, 48 (2021) S75, https://doi.org/10.1007/s00259-021-05547-1

  26. Study of central exclusive production of top quark-antiquark pairs at LHC, M. Pisano, Nuovo Cimento 44C (2021) 66

  27. Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição, P. Assis, F. Assunção, A. Bakalova, U. Barres de Almeida, C. Roque Bom, J. Correia, A. De Angelis, L.O. Dias, B. Serrano González, A. Guillén, G. La Mura, N. Lourenço, P. Machado, S. Marques, L. Mendes, M. Pimenta, R. Shellard, B. Tomé and J. Vicha, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 707, https://doi.org/10.22323/1.395.0707

  28. Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 709, https://doi.org/10.22323/1.395.0709

  29. New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories, R. Conceição, L. Peres, M. Pimenta and B. Tomé, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 711, https://doi.org/10.22323/1.395.0711

  30. Search for new physics in b→sℓ+ℓ− transitions at CMS, A. Boletti, on behalf of the CMS Collaboration, PoS(ICHEP2020)365

  31. The ATLAS Hardware Track Trigger performance studies for the HL-LHC, A. L. Moreira de Carvalho on behalf of the ATLAS Collaboration, PoS(LHCP2020)247

  32. Jet substructure modification probes the QGP resolution length, J. Casalderrey-Solana, G. Milhano, D. Pablos and K. Rajagopal, Nucl.Phys.A 1005 (2021) 121904, 10.1016/j.nuclphysa.2020.121904

  33. Impact of LHC jet data on Parton Distribution Functions, João Pires, PoS LHCP2020 (2020) 145, 10.22323/1.382.0145

  34. Gamma-ray Astrophysics in the MeV Range The ASTROGAM Concept and Beyond, A. De Angelis, V. Tatischeff, S. Brandt, A. Bulgarelli, R. Curado da Silva, I. Grenier, L. Hanlon, D. H. Hartmann, M. Hernanz, G. Kanbach, I. Kuvvetli, P. Laurent, M. Mariotti, M. N. Mazziotta, J. Mc Enery, A. Morselli, K. Nakazawa, M. Pearce, J. Rico, X. Wu, S. Zane, A. Zoglauer, Exp. Astron. 51 (2021) 1225-1254, 10.1007/s10686-021-09706-y

Conference Poster

  1. RODRIGO, A.P., GROSSO, A., MENDES, V.M., MANADAS, B., BATISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2021). Unveiling venomous annelids by combining omics with ecological traits: The example of a phyllodocid. 12th European Conference on Marine Natural Products, Galway (Ireland), September 2021.

  2. Borges V. 2021 (23 March). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: Joint ECDC-WHO EURO virus characterisation working group meeting, World Health Organization (WHO) and European Centre for Disease Prevention and Control (ECDC)

  3. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.

  4. Integrated biochemical and computational approach reveals novel mechanisms underlying the antifungal activity of the milk-derived lactoferrin protein Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real XXI SPB National Congress of Biochemistry 14-16th Oct 2021, Évora, Portugal (online)

  5. Application of QM/MM methods for development of plastic degradation enzymes Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 6th 2021, Porto, Portugal (online)

  6. Integrated in silico approach for the development of a new antipsychotic drug candidate to treat schizophrenia Rodrigo Andrade, Elina Marinho, Alba Iglesias, Jose Brea, Marián Castro, Filipe A. Almeida Paz, Filipe M. Areias, Maria I. Loza, Sérgio F. Sousa and M. Fernanda Proença Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal

  7. Borges V. 2021. (23 March). Título: “Add-value of SARS-CoV-2 minor variant analysis: some practical examples”. I-MOVE-COVID-19 annual meeting.

  8. Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho and Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP), May 7th 2021, Porto, Portugal

  9. Molecular Docking, Molecular Dynamics, and Free Energy Calculations for Identification of New Drugs Against Biofilm Formation in P.aeruginosa Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Hünfeld 2021: Workshop on Computer Simulation and Theory of Macromolecules April 23-24 2021 (online)

  10. Identification of Biofilm Formation Inhibitors in Pseudomonas aeruginosa through Virtual Screening, Molecular Dynamics, and Free Energy Calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online) Best Poster Communication

  11. Bioinformatic applications for the development of plastic degradation enzymes using QM/MM Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  12. Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  13. 3D Prediction of Non-B DNA Conformations Associated with MtDNA Genomic Instability André F. Pina, Sérgio F. Sousa, João Carneiro X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  14. In silico methodology for the identification of new drugs against biofilm formation in P. aeruginosa Tatiana F. Vieira, Rita P. Magalhães, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)

  15. Discovery of New Drugs Against Biofilm Formation in P.aeruginosa through Molecular Docking, Virtual Screening, Molecular Dynamics and MM/GBSA calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)

  16. Elucidating the interaction of lactoferrin with V-ATPase towards understanding its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa. The 24th meeting of the International Society for Molecular Recognition, Affinity 2021, 22-24 June 2021 Note: Young investigator award

  17. A Multi-Level Computational Approach in the Discovery of New Quorum Sensing Inhibitors for P. aeruginosa Tatiana F. Vieira , Cristina Sousa, Sérgio F. Sousa Paul Ehrlich (PE) Euro-PhD Network virtual meeting, MedChem2021 26-28 July 2021 (online)

  18. Development of a Classification Model for the Identification of Targets to Known P.aeruginosa Biofilm Formation Inhibitors Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa Machine Learning in Quantum Physics and Chemistry Summer School 24 August to 3 September 2021, Warsaw, Poland Note: Award for 3rd Best Poster

  19. Specialized Multi-Level Computational Approach For The Identification of Novel Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)

  20. Optimization of a Drug Discovery Computer Aided Workflow for Identification of P.aeruginosa Quorum-Sensing Inhibitors Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)

  21. The catalytic mechanism of Nitrilase 2: the role of the Cys-Glu-Lys catalytic triad Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa 18th European Symposium on Organic Reactivity (ESOR2021) 21-23 September 2021, Vrije Universiteit Amsterdam, The Netherlands (online)

  22. The Cys-Glu-Lys catalytic triad from the nitrilase superfamily: a QM/MM study on Nitrilase 2 Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexel (virtual)

  23. Unveiling the catalytic mechanism of the Cys-Glu-Lys catalytic triads using the Nitrilase 2 as a case study Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) 7December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  24. Unraveling the Catalytic Mechanism of Threonine Aldolase, a potential biocatalyst for industrial application Juliana F. Rocha, Sérgio F. Sousa, Nuno M. F. S. A. Cerqueira FEBS 2021 Advanced Course - Computational Approaches to Understanding and Engineering Enzyme Catalysis October 19-22st 2021, Oulu, Finland (online) - Flash Talk

  25. The Catalytic Mechanism of the SARS-Cov-2 Main Protease Henrique S. Fernandes, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  26. Optimization of Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  27. A computational study on the catalytic mechanism of Pdx2: a glutaminase containing the Cys-His-Glu triad André F. Pina, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  28. Specialized Multi-Level Computational Protocol for the Identification of Potential New Drugs Fábio G. Martins, Tatiana F. Vieira, Joel P. Moreira, Tiago Barbosa, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  29. Unraveling the catalytic mechanism of Threonine aldolase - a critical enzyme in the pharmaceutical industry Juliana F. Rocha, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  30. Bridging the gap between lactoferrin and V-ATPase through a multi-stage computational approach Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  31. Molecular detection of species from the Boraginaceae family to safeguard food and feed safety, integrity, authenticity, and quality Inês Carvalho Leonardo, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  32. The complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a food spoiler taint producing strain Inês Carvalho Leonardo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  33. Adaptation of SPARK to atmospheric-pressure micro-plasma jet flow conditions Duarte Gonçalves, João Santos Sousa, Stéphane Pasquiers, Mário Lino da Silva, Luís Lemos Alves PLATHINIUM 2021

  34. Sinval, J.; Vazquez, A.C.S.; Hutz, C.S.; Schaufeli, W.B.; Silva, S. Burnout Assessment Tool (BAT): Validity Evidence from Brazil and Portugal. Int. J. Environ. Res. Public Health 2022, 19, 1344. https://doi.org/10.3390/ijerph19031344

  35. Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaborations, ISMD2021 - International symposium on multiparticle dynamics

  36. Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaboration, 50th International Symposium on Multiparticle Dynamics

  37. Evidence for local acceleration of heavy >10 MeV/n oxygen and sulphur in Jupiter's innermost radiation belts, Elias Roussos, Christina Cohen, Peter Kollmann, Marco Pinto, Patricia Gonçalves, Norbert Krupp, and Konstantinos Dialynas, Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-603

  38. Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição et al., for the SWGO collaboration, 37th International Cosmic Ray Conference (Berlin)

  39. Modeling the radiobiological effects of gold nanoparticles in proton therapy of glioblastomas, J. Antunes, F. Mendes, A. Paulo and J. M. Sampaio, PANIC 2021, Particles and Nuclei International Conference

  40. Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, U. Barres de Almeida, A. De Angelis, R. Conceição, F. Longo, M. Pimenta, E. Prandini, E. Ruiz-Velasco, B. Tomé on behalf of the SWGO Collaboration, 37th International Cosmic Ray Conference (Berlin)

  41. The BepiColombo Radiation Monitor, Pinto, M., Gonçalves, P., Cardoso, C., Sanchez-Cano, B., Moissl, R., Vainio, R., Oleynik, P., Huovelin, J., Korpela, S., Lehtolainen, A., Grande, M., and Marques, A., Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-204

  42. Palestra/Webinar “Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.

  43. Palestra/Webinar “A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.

Dataset

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Comparative transcriptomics between two potential toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. GenBank OL606744-OL606747 (embargo pending)
  2. Crispim Romao, Miguel; Castro, Nuno F.; Pedro, Rute; Simulated pp collisions at 13 TeV with 2 leptons + 1 b jet final state and selected benchmark Beyond the Standard Model signals. DOI: 10.5281/zenodo.5126747.

2020

Internationl Paper with refere

  1. Nogueira PJ, de Araújo Nobre M, Nicola PJ, Furtado C, Vaz Carneiro A. Excess Mortality Estimation During the COVID-19 Pandemic: Preliminary Data from Portugal. Acta Med Port [Internet]. 2020 Jun. 1 [cited 2023 Jan. 23];33(6):376-83. https://doi.org/10.20344/amp.13928

  2. Assunção, Hugo, et al. "University student engagement inventory (USEI): transcultural validity evidence across four continents." Frontiers in Psychology 10 (2020): 2796. https://doi.org/10.3389/fpsyg.2019.02796

  3. Sinval, Jorge, and João Marôco. "Short index of job satisfaction: Validity evidence from Portugal and Brazil." PLoS One 15.4 (2020): e0231474. https://doi.org/10.1371/journal.pone.0231474

  4. Marôco, João, et al. "Predictors of academic efficacy and dropout intention in university students: Can engagement suppress burnout?." PLoS One 15.10 (2020): e0239816. https://doi.org/10.1371/journal.pone.0239816

  5. Nogueira, Paulo Jorge, et al. "The role of health preconditions on COVID-19 deaths in Portugal: evidence from surveillance data of the first 20293 infection cases." Journal of Clinical Medicine 9.8 (2020): 2368. https://doi.org/10.3390/jcm9082368

  6. Manso J., Marcelino J., Caldeira L. (2018). Crushing and oedometer compression of rockfill using DEM. Computers and geotechnics - 101 (2018): 11-22.

  7. Manso J., Marcelino J., Caldeira L. (2019). Effect of the clump size for bonded particle model on the uniaxial and tensile strength ratio of rock. International Journal of Rock Mechanics and Mining Sciences - 114 (2019): 131-140.

  8. Manso J., Marcelino J., Caldeira L. (2020). Single-particle crushing strength under different relative humidity conditions. Acta Geotechnica (2020): 1-13.

  9. Borges et al, 2020 (Emerging Microbes and Infections); https://doi.org/10.1080/22221751.2020.1844552

  10. jorge Sinval et all. "Development of the Referee Shared Mental Models Measure (RSMMM)"Front. Psychol., 19 October 2020 | https://doi.org/10.3389/fpsyg.2020.550271

  11. jorge Sinval et all. "Measurement Invariance of the Burnout Assessment Tool (BAT) Across Seven C", Int. J. Environ. Res. Public Health 2020, 17(15), 5604; https://doi.org/10.3390/ijerph17155604 - 03 Aug 2020

  12. Joao Maroco et all. "Validation of the Portuguese version of the Community Assessment of Psychic Experiences and characterization of psychotic experiences in a Brazilian sample"Braz J Psychiatry. 2020 xxx-xxx;00(00):000-000 doi:10.1590/1516-4446-2019-0611

  13. Sílvia Monteiro, Leandro Almeida, Cristiano Gomes & Jorge Sinval (2020): Employability profiles of higher education graduates: a person-oriented approach, Studies in Higher Education, DOI: 10.1080/03075079.2020.1761785

  14. Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.

  15. A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.

  16. Orue-Echevarría, D., Castellanos, P., Sans, J., Emelianov, M., Vallés-Casanova, I., and Pelegrí, J. L. 2019. Temperature spatio-temporal correlation scales in the Brazil Malvinas Confluence from high-resolution in-situ and remote sensing data. Geophysical Research Letter. https://doi.org/10.1029/2019GL084246

  17. Cabral, S., Carvalho, F., Gaspar, M., Ramajal, J., Sá, E., Santos, C., Silva, G., Sousa, A., Costa, J.L., Chainho, P. 2019. Non-indigenous species in soft-sediments: Are some estuaries more invaded than others? Ecological Indicators. In press. https://doi.org/10.1016/j.ecolind.2019.105640

  18. Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044

  19. Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044

  20. Brito, A.C., Garrido-Amador, P., Gameiro, C., Nogueira, M., Moita, M.T., Cabrita, M.T. (2020). Integrating in situ and ocean color data to evaluate ecological quality under the Water Framework Directive. Water, 12, 3443.

  21. Ferreira, A., Brotas, V., Palma, C., Borges, C., Brito, A.C. (in review). Assessing phytoplankton bloom phenology in upwelling-influenced regions using ocean colour remote sensing. Remote Sensing

  22. Sent, G., Biguino, B., Favareto, L., Cruz, J., Sá, C., Dogliotti, A., Brotas, V., Brito, A.C. (in review). Deriving water quality parameters using Sentinel-2 imagery: A case study in the Sado estuary, Portugal. Remote Sensing.

  23. Afonso, I., E. Berecibar, N. Castro, J.L. Costa, P. Frias, P. Moreira, P. Oliveira, F. Henriques, G. Silva & P. Chainho. (2020). Assessment of the colonization and dispersal success of non-indigenous species introduced in recreational marinas. Ecological Indicators 113: 106147. https://doi.org/10.1016/j.ecolind.2020.106147

  24. Vieira, S., P. Barrulas , P. Chainho C. Dias, K. Sroczyńska & H. Adão (accepted). Multi-element composition as a tool for spatial and temporal habitat discrimination of the non-indigenous clam Ruditapes philippinarum (Adam & Reeve, 1850) populations. Ecological Indicators.

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  71. L. Apolinário, J. Barata, J. G. Milhano, On the breaking of Casimir scaling in jet quenching, Eur. Phys. J. C 80, 586 (2020), http://dx.doi.org/10.1140/epjc/s10052-020-8133-1

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  73. Avik Roy, Nikiforos Nikiforou, Nuno Castro, Timothy Andeen, Novel Interpretation Strategy for Searches of Singly Produced Vector-like Quarks at the LHC, Phys. Rev. D 101 (2020) 115027, http://dx.doi.org/10.1103/PhysRevD.101.115027

  74. P. Socha, M. Pinto, W. Hajdas and P. Gonçalves, Beam test results of a prototype of the Radiation Hard Electron Monitor to be flown in the JUICE mission, Journal of Instrumentation, Volume 15, June 2020 IPRD19, http://dx.doi.org/10.1088/1748-0221/15/06/C06032

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National paper

  1. Manso, J., Marcelino, J., Caldeira, L.. (2018a) – Estudo da evolução granulométrica em ensaios edométricos de enrocamento, com controlo de sucção. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018;
  2. Manso, J., Marcelino, J., Caldeira, L.. (2018b) – Discrete numerical modelling of the mechanical behaviour of rockfill in a oedometer test with suction control. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018.
  3. Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia

Books

  1. Lista Vermelha da Flora Vascular de Portugal Continental – ISBN: 978-972-27-2870-6 - versão impressa
  2. Lista Vermelha da Flora Vascular de Portugal Continental - ISBN: 978-972-27-2876-8 - versão digital – disponível em dois sítios:
    • https://listavermelha-flora.pt/wp-content/uploads/2020/10/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf
    • http://spbotanica.pt/docs/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

Finished

  1. Pereira, C. (2020). Formulation of an advanced effective stress based constitutive model for unsaturated soils. PhD Thesis, IST, Lisbon,
  2. Mendes, D. (2020). Modelling infra-gravity waves in coastal areas, Tese de Doutoramento em Engenharia Civil, IST.
  3. Giles Strong (2020). Deep Learning methods applied to Higgs physics at the LHC, PhD Thesis. Instituto Superior Tecnico.
  4. Oleksii Toldaiev (2020). Top quark physics and search for physics beyond the Standard Model at the Large Hadron Collider. PhD Thesis, Instituto Superior Tecnico.
  5. Ricardo Luz (2020). Development of the instrumentation and readout schemes of MARTA, an upgrade to the Pierre Auger Observatory. PhD Thesis, Instituto Superior Tecnico.
  6. João Marcos (2020). Real-time statistical event reconstruction for medical scintillation cameras. PhD Thesis, University of Coimbra.
  7. Miguel Moita (2020). ASTROGAM Space Gamma-ray Telescope Main Instrument Development, Doctoral program in Applied Physics and Physical Engineering, University of Coimbra.

Ongoing

  1. Manso J. (2017). Predicting the behaviour of rockfill embankments. Instituto Superior Técnico Universidade de Lisboa.
  2. Luís Borges-Araújo Institute for Bioengineering and Biosciences, Instituto Superior Técnico: PD/BD/137492/2018
  3. Mariana de Oliveira Farinha Fidalgo Valério Universidade Nova de Lisboa / Instituto de Tecnologia e Química Biológica: SFRH/BD/148542/2019
  4. PhD thesis de Paulo Santos (LASIGE/FCUL) (https://www.lasige.pt/member/paulo-santos)
  5. PhD thesis de Guilherme Espada (LASIGE/FCUL) (https://www.lasige.pt/member/guilherme-espada)
  6. João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  7. Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018
  8. Biology and ecology of allis shad in Portugal: contributions of fluvial restoration and participated management to its conservation. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/123434/2016)
  9. Catadromous migration of the Thinlip grey mullet (Liza ramada Risso, 1827) and its importance to fluvial ecosystems. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/121042/2016)
  10. Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  11. Water quality indexes for Estuarine Waters: assessment of temporal and spatial variability. PhD Thesis, Universidade de Lisboa (EARTHSYSTEMS FCT – Programa Doutoral – PD/BD/135064/2017)
  12. Evaluating the design and size adequacy of a Marine Protected Area to promote small-scale artisanal fisheries management. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (Bolsa FCT referência SFRH/BD/131868/2017)
  13. Assessment of anthropogenic impacts on the European Eel in Portugal. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (EARTHSYSTEMS FCT – Programa Doutoral - PD/143/2012) RuiMonteiro
  14. Phytoplankton response to climate change on the North Atlantic and Southern Ocean. PhD Thesis. Universidade de Lisboa. (FCT- SFRH/BD/144586/2019)
  15. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. MSc Thesis in Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências
  16. Bio-optical properties of Portuguese coastal waters with emphasis on the detection of Functional Types of Phytoplankton. PhD Thesis, Universidade de Lisboa (Bolsa CNPq referência 200589/2019-9)

Master Thesis

Finished

  1. Automatic conversion of ADA source code to scala, Espada, Guilherme Jorge Nunes Monteiro (https://repositorio.ul.pt/handle/10451/48217)
  2. Bayesian approach to Ecological Monitoring data: Latent Growth Curve Models. Mestrado em Bioestatística, Universidade de Lisboa, Faculdade de Ciências.
  3. Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
  4. Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  5. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  6. Rita Afonso Population genomics of the endangered seabird Bermuda Petrel (Pterodroma cahow). Mestrado em Biologia Evolutiva e do Desenvolvimento, Faculdade de Ciências, Universidade de Lisboa
  7. Luis Coelho (2020), Study of the CP nature of the top-Higgs coupling in ttH events at the LHC, MSc Thesis in Physics, University of Coimbra, Faculty of Sciences
  8. Joana Mingacho (2020), Terrestrial Gamma-ray Flashes analysis for Aircraft Transport Safety, Master in Engineering physics, University of Coimbra, Faculty of Sciences
  9. Joana Antunes, Simulations of radiosensitization efficacy of nanoparticles in proton therapy, Mestrado Integrado em Engenharia Biomédica e Biofísica, Universidade de Lisboa, Faculdade de Ciências.
  10. Maura Teixeira, Search for Dark Matter in Monotop Events at the Large Hadron Collider, Master in Physics, University of Minho
  11. Jacinto Fonseca, Detection of Magnetic Inelastic Dark Matter, Master in Physics, University of Coimbra
  12. Matteo Magherini, Vector Boson Scattering with a tau lepton in the final state in proton-proton collisions at the Large Hadron Collider, MSc Univ. of Perugia
  13. Ricardo Barrué, Study of the ATLAS sensibility to anomalous Spin/CP components in the HWW vertex, MSc in Physics Engineering, IST

ongoing

  1. Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.

Conference Paper

  1. "A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020
  2. P. Lopes; A. Oliveira; C. Pereira; R. S. Brito; M. A. Cardoso; R. Martins; M. David; J. Gomes; J. Pina et al., "RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts," 2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO), Opatija, Croatia, 2020, pp. 1651-1655, doi: 10.23919/MIPRO48935.2020.9245231.
  3. CAMPUZANO F., SOBRINHO J., RODRIGUES M., NUNES S., CASTELLANOS P., ALMADA F., FERNANDES C.S., PASCOAL A., NEVES R., OLIVEIRA A., OLIVEIRA A., BROTAS V. (2020). Desenvolvimento dum observatório costeiro para a Área Metropolitana de Lisboa. 6as Jornadas de Engenharia Hidrográfica/1as Jornadas Luso-Espanholas de Hidrografia, 408-411
  4. Manso, J., Marcelino, J., Caldeira, L.. (2018) – Settlement Analysis of the Montesinho CFRD. Third International DAM WORLD Conference – DAMWORLD 2018, Foz do Iguaçu, Brasil, 17 e 21 de setembro de 2018.
  5. Manso, J., Marcelino, J., Caldeira, L.. (2019) "Settlement analysis of the Montesinho concrete-face rockfill dam", XVII European Conference on Soil Mechanics and Geotechnical Engineering – XVII ECSMGE-2019, Reykjavík, Islândia, 1 a 7 de setembro de 2019.
  6. Manso, J., Marcelino, J., Caldeira, L.. (2020) "Yielding of rockfill in triaxial experiments", DAM WORLD Webinar, evento online, emitido a partir de Lisboa, 22 a 24 de setembro de 2020.
  7. R. Pedro, Operation and Performance of the ATLAS Tile Calorimeter, J. Phys.: Conf. Ser. 1690 012045
  8. B. Pereira on behalf of the ATLAS Collaboration, Radiation hardness of the atlas tile calorimeter optical components, J. Phys.: Conf. Ser. 1690 012053
  9. Laura Sargsyan and Filipe Martins, Evaluation of a new visualization and analytics solution for slow control data for large scale experiments, EPJ Web of Conferences 245, 07001 (2020), https://doi.org/10.1051/epjconf/202024507001
  10. L. Apolinário, Time evolution of a medium-modified jet, PoS EPS-HEP2019 (2020) 296, http://dx.doi.org/10.22323/1.364.0296
  11. Helena Santos, Jet Production in Heavy Ion Collisions with the ATLAS Experiment, PoS 2020, vol. 364, p. 286, https://pos.sissa.it/364/286/
  12. P.Lopes, A.Oliveira, C.Pereira, R.S.Brito, M.A.Cardoso, R.Martins, M.David, J.Gomes, J.Pina, RESCCUE RAF App - Using Technology to Mitigate Climate Change Urban Impacts, Mipro2020, ISSN 1847-3946, pp 1959-1963
  13. M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Europlanet Science Congress 2020, online, 21 September-9 Oct 2020, EPSC2020-311, 2020, http://dx.doi.org/10.5194/epsc2020-311
  14. G. Strong et al., Muon Energy Measurement from Radiative Losses in a Calorimeter for a Collider Detector, https://arxiv.org/abs/2008.10958
  15. Shoaib Sufi et.al, Report on the Workshop on Sustainable Software Sustainability 2019 (WOSSS19), http://dx.doi.org/10.5281/zenodo.3922155
  16. M. Gallinaro et al., Precise timing with the PICOSEC-Micromegas detector, Nuovo Cim. C 43 (2020) 1, https://doi.org/10.1393/ncc/i2020-20013-8
  17. M. Gallinaro et al., Beyond the Standard Model in Vector Boson Scattering signatures, https://arxiv.org/abs/2005.09889
  18. M. Gallinaro et al., Single photoelectron time resolution studies of the PICOSEC-Micromegas detector, JINST 15(2020) 04, C04053, https://doi.org/10.1088/1748-0221/15/04/C04053
  19. Agostinho Gomes, Jose Augusto, Filipe Cuim, Guiomar Evans, Rui Fernandez, Luis Gurriana, Filipe Martins, Upgrade of the ATLAS Tile Calorimeter High Voltage System, ATL-TILECAL-PROC-2019-008, PoS 370-062, http://dx.doi.org/10.22323/1.370.0062
  20. G. Strong, HiggsML Lumin Code: supporting arXiv:2002.01427, https://doi.org/10.5281/zenodo.3754669
  21. M. Gallinaro et al., Progress on the PICOSEC-Micromegas Detector Development: Towards a precise timing, radiation hard, large-scale particle detector with segmented readout, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 958 (2020) 162877, http://dx.doi.org/10.1016/j.nima.2019.162877
  22. V. Lozza for the SNO+ Collaboration, Backgrounds Analysis for the SNO+ Experiment, Proceedings of TAUP 2019, to be published in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/1468/1/012135

Conference Poster

  1. RODRIGUES M., MARTINS R., ROGEIRO J., OLIVEIRA A., FORTUNATO A.B., AZEVEDO A., FREIRE P., CRAVO A., JACOB J., ROSA A. (2020). The UBEST observatory: an innovative HPC-based portal for water quality management in coastal regions. EOSC week 2020, 1pp.
  2. Borges V. 2020 (20 May). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: ECDC COVID-19 Laboratory Networks Influenza, European Centre for Disease Prevention and Control (ECDC)
  3. Borges and Isidro, 2020 (10 October). Genetic diversity of the novel coronavirus SARS-CoV-2 (COVID-19) in Portugal; XV CICS-UBI Symposium CICS-UBI.
  4. Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia. LNEC, 3 a 6 de maio de 2020 (adiado).
  5. Palestra/Webinar «A flora ameaçada de Portugal continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 8 de Maio de 2020, integrada no «BioLousada em Casa», organizado pela Câmara Municipal de Lousada.
  6. Palestra/Webinar «A flora ameaçada de Portugal continental», por Paulo Pereira (Sociedade Portuguesa de Botânica), a 5 de Outubro de 2020, integrada no Festival de Observação de Aves & Actividades de Natureza/Festival Bird Watching, em Sagres, organizado pela Sociedade Portuguesa para o Estudo das Aves, pela Câmara Municipal de Vila do Bispo e pela Associação Almargem.
  7. Comunicação «Apresentação da publicação ‘Lista Vermelha da Flora Vascular de Portugal Continental’ e considerações finais», por Ana Francisco (Sociedade Portuguesa de Botânica), a 13 de Outubro de 2020, integrada na Conferência Pública «Plantas em Risco de Extinção: A Lista Vermelha da Flora Vascular de Portugal Continental», realizada na Fundação Calouste Gulbenkian (auditório 2), em Lisboa, organizada pela Sociedade Portuguesa de Botânica.
  8. URL da comunicação: https://listavermelha-flora.pt/wp-content/uploads/2020/11/07_PDF_AnaFrancisco.pdf
  9. Logótipo da INCD apresentado no slide 21 da comunicação.
  10. Palestra/Webinar «Lista Vermelha da Flora Vascular de Portugal Continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 4 de Novembro de 2020, para a turma do 10ª ano da Escola Secundária Pedro Nunes, em Lisboa.
  11. P. Figueiredo, G. Lage, P. Conde Muíño, R. Pedro, Investigando as interações entre o bosão de Higgs e o W com ATLAS Open Data, Conferência Nacional de Física (Física 2020), Lisboa
  12. Carolina Costa, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferência Nacional de Física (Física 2020), Lisboa
  13. Rita Silva, AMBER Experiment at CERN, Jornadas LIP, Braga, Portugal
  14. A.S. Alic, M. Antonacci, M. Caballer, I. Campos, A. Costantini, M. David, S. Dlugolinsky, G. Donvito, C. Duma, J. Gomes, M. Hardt, I. Heredia, L. Hluchy, K. Ito, V. Kozlov, L. Lloret, A. López García, J. Marco, L. Matyska, G. Moltó, G. Nguyen, P. Orviz, M. Plociennik, Z. Šustr, V. Tran, P. Wolniewicz, W. zu Castell, DEEP framework for deep learning, ISC High Performance 2020, Frankfurt
  15. Susana Santos, Determination of the Higgs CP properties in hadron colliders, Jornadas LIP, Braga, Portugal
  16. Rute Pedro, Machine Learning in the Search for New Physics Phenomena at the LHC, Jornadas do LIP, Braga, Universidade do Minho
  17. M. Moita, N. Auricchio, E. Caroli, R. M. Curado da Silva, G. De Cesare, S. Del Sordo, J. M. Maia, J. Stephen, E. Virgilli, Monte Carlo study of a 3D CZT Spectroscopic-imager for Scattering Polarimetry, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
  18. Ana Peixoto, Novel flavour-changing neutral currents in the top quark sector, Poster session at the TOP2020 international conference
  19. Luís Sintra, Luísa Arruda, Patrícia Gonçalves, Particle Energy Spectra Reconstruction of the MFS Data using Machine Learning Techniques, Jornadas Científicas LIP 2020, Universidade do Minho, Braga
  20. M. Moita, R. M. Curado da Silva, J. M. Maia, G. Salgado, G. Canezin, C. Kierans, R. Caputo, J. E. McEnery, Polarimetric Potential of AMEGO-X Mission Proposal, XXX Encontro Nacional de Astronomia e Astrofísica, Instituto de Astrofísica e Ciências do Espaço, Porto
  21. Miguel Moita, Polarimetric Potential of AMEGO-X Mission Proposal, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
  22. Emanuel Gouveia, Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment, LIP Jornadas, Braga, Universidade do Minho
  23. Diogo de Bastos, Prospects at the High-Luminosity LHC with the CMS experiment, Particle physics for the future of Europe, IST, Lisbon
  24. B. Pereira, Radiation hardness of the atlas tile calorimeter optical components, ICPPA 2020, Virtual World - Moscow
  25. Coelho, Luis Felipe and Goncalo, R. and Gouveia, E. D. and Moreira De Carvalho, A. L. and Onofre, A., Search for CP-odd ttH production in the H -> bb decay channel, 6th IDPASC/LIP PhD Students Workshop, Portugal
  26. Luis Coelho, Search for CP-odd ttH production in the H->bb decay channel with ATLAS, 6th IDPASC PhD students workshop,
  27. Ana Peixoto, Search for Flavour Changing Neutral Currents interactions in the tZq vertex with the ATLAS Experiment at 13 TeV, LIP Jornadas 2020, Braga, Universidade do Minho
  28. Tiago Vale, Search for vector-like quarks with the ATLAS Experiment, LIP Jornadas, Braga, Universidade do Minho
  29. C. Costa, R. Barrué, P. Conde Muíño, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferencia Nacional de Física (Física 2020)
  30. Ricardo Barrué, Sensitivity to anomalous HWW couplings at ATLAS, LIP Jornadas, Braga, Universidade do Minho
  31. N.Leonardo, S. Fonseca, E. Melo, A.Jales, T.Gaehtgens, Study of the efficiency of muon identification algorithm with Tag and Probe method using CMS Open Data, Fisica 2000
  32. Ana Carvalho, Ricardo Gonçalo, Patricia Conde, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, 8th Conference of Large Hadron Collider Physics
  33. Ana Luísa Moreira de Carvalho, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, LHCP 2020
  34. M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Outer planet moon - magnetosphere interaction workshop
  35. S. Andringa, A. Blanco, P. Dobrilla, R. Gonçalo, D. Gonçalves, G. Gouveia, L. Lopes, J. Pereira, Um dispositivo móvel baseado em RPCs para tomografia de muoes, FÍSICA 2020 - 22ª Conferência Nacional de Física,
  36. A. Blanco, P. Fonte, L. Lopes, E. Neves, J. Saraiva e M. Veiga, Um novo detetor de tempo de voo para a experiência HADES, FÍSICA 2020 - 22ª Conferência Nacional de Física
  37. Sara Mesquita, Lília Perfeito and Joana Gonçalves de Sá, Using pandemic periods to improve now-casting models based on search engine data, Complex Networks 2020, Madrid

Datasets

  1. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954

2019

Journal Paper with direct contribution

  1. A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, Environmental Modelling & Software, 2019, 104585,ISSN 1364-8152, https://doi.org/10.1016/j.envsoft.2019.104585.
  2. Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins, Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
  3. F.J.A.L. Cruz, Saman Alavi, J.P.B. Mota, "Low-temperature Thermodynamic Study of the Metastable Empty Clathrate Hydrates using Molecular Simulations", ACS. Earth Space Chem. 3 (2019) 789
  4. Oliveira A.; Rodrigues, M.; Rogeiro, J.; Fortunato, A. B.; Teixeira, J.; Azevedo, A.; Lopes, P. (2019) OPENCoastS: An Open-Access App for Sharing Coastal Prediction Information for Management and Recreation. In: Rodrigues J. et al. (eds) Computational Science – ICCS 2019. ICCS 2019. Lecture Notes in Computer Science, vol 11540. Springer, https://doi.org/10.1007/978-3-030-04849-5_44
  5. Anabela Oliveira, André Fortunato, João Rogeiro, Joana Teixeira, Alberto Azevedo, Laura Lavaud, Xavier Bertin, Jorge Humberto Lúcio Oliveira Gomes, Mario David, Joao Pina, Marta Rodrigues, Pedro Lopes (2019) OPENCoastS: an open-access service for the automatic generation of coastal forecast systems. In: ENVSOFT_2019_458 _R1 (Accepted, Ready for Decision)
  6. Automatic Design of Artificial Neural Networks for Gamma-Ray Detection Filipe Assunção, João Correia, Rúben Conceição, Mário Pimenta, Bernardo Tomé, Nuno Lourenço, Penousal Machado IEEE Access, Vol 7 (2019) 110531 10.1109/ACCESS.2019.2933947
  7. Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Barros, Maneira, Prior Phys. Rev. D 99, 032013 10.1103/PhysRevD.99.032013
  8. Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto Accepted for publication on IEEE Transactions on Nuclear Science on 04 Oct 2018, 10.1109/TNS.2019.2900398 10.1109/TNS.2019.2900398
  9. Gravitational wave and collider probes of extended Higgs sectors with a low cutoff Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP) Eur. Phys. J. C (2019) 79: 156 10.1140/epjc/s10052-019-6655-1
  10. Search for invisible modes of nucleon decay in water with the SNO+ detector M. Anderson et al. (The SNO+ Collaboration) Phys. Rev. D 99, 032008 10.1103/PhysRevD.99.032008
  11. GUIMesh: a tool to import STEP geometries into Geant4 via GDML M. Pinto, P. Gonçalves accepted for publication on Computer Physics Communications, 10.1016/j.cpc.2019.01.024 10.1016/j.cpc.2019.01.024
  12. β decay of 133 In : γ emission from neutron-unbound states in 133 Sn M. Piersa, et al. Phys. Rev. C 99, 024304 (2019) 10.1103/PhysRevC.99.024304
  13. Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds M. Anderson et al. (SNO+ Collaboration) Phys. Rev. D 99, 012012 (2019) 10.1103/PhysRevD.99.012012
  14. Boron-10 lined RPCs for sub-millimeter resolution thermal neutron detectors: Feasibility study in a thermal neutron beam L.M.S. Margato, A. Morozov, A. Blanco, P. Fonte, F.A.F. Fraga, B. Guerard, R. Hall-Wilton, C. Höglunde, A. Mangiarotti, L. Robinson, S. Schmidt and K. Zeitelhack 2019 JINST 14 P01017 10.1088/1748-0221/14/01/P01017
  15. Search for vector-boson resonances decaying to a top quark and bottom quark in the lepton plus jets final state in $pp$ collisions at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B788 (2019) 347-370 10.1016/j.physletb.2018.11.032
  16. Measurement of the Gamma Ray Background in the Davis Cavern at the Sanford Underground Research Facility, D. Akerib et al, Astroparticle Physics Volume 116, 2020, 102391, 10.1016/j.astropartphys.2019.102391
  17. Hadronic interaction model sibyll 2.3 c and inclusive lepton fluxes, Anatoli Fedynitch, Felix Riehn, Ralph Engel, Thomas K. Gaisser, and Todor Stanev, Phys. Rev. D 100, 103018, 10.1103/PhysRevD.100.103018
  18. Role of the t(t)over-barh rest frame in direct top-quark Yukawa coupling measurements, Andrea Ferroglia, Miguel C. N. Fiolhais, Emanuel Gouveia, and António Onofre, Phys. Rev. D 100, 075034, 10.1103/PhysRevD.100.075034
  19. Calculations for deep inelastic scattering using fast interpolation grid techniques at NNLO in QCD and the extraction of alpha_s from HERA data, D. Britzger, J. Currie, A. Gehrmann-De Ridder, T. Gehrmann, E.W.N. Glover, C. Gwenlan, A. Huss, T. Morgan, J. Niehues, J. Pires, K. Rabbertz, M.R. Sutton, Eur.Phys.J. C79 (2019) no.10, 845, 10.1140/epjc/s10052-019-7351-x
  20. Beam test results of the RADEM Engineering Model, M.Pinto, P. Gonçalves, P. Socha, W. Hajdas, A. Marques, J.Costa Pinto, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 10.1016/j.nima.2019.162795
  21. Dark Matter Benchmark Models for Early LHC Run-2 Searches: Report of the ATLAS/CMS Dark Matter Forum, D. Abercrombie et al. Phys. Dark Univ. 27 (2020) 100371, 10.1016/j.dark.2019.100371
  22. Measurement of B-s(0) meson production in pp and PbPb collisions at root S-NN=5.02 TeV, CMS Collaboration (2263 authors), Phys. Lett. B 796 (2019) 168-190, 10.1016/j.physletb.2019.07.014
  23. Differential Dijet Cross Section at the LHC, Aude Gehrmann-De Ridder, Thomas Gehrmann, E.W.N. Glover, Alexander Huss, Joao Pires, Phys. Rev. Lett. 123, 102001 (2019), 10.1103/PhysRevLett.123.102001
  24. Improved measurements of the β -decay response of liquid xenon with the LUX detector, D Akerib et al, Phys. Rev. D 100, 022002, 2019, 10.1103/PhysRevD.100.022002
  25. Long term experience in Autonomous Stations and production quality control, L. Lopes, A. B. Alves, P. Assis, A. Blanco, N. Carolino, M. A. Cerda, R. Conceição, O. Cunha, C. Dobrigkeit, M. Ferreira, P. Fonte, L. de Almeida, R. Luz, V. B. Martins, L. Mendes, J. C. Nogueira, A. Pereira, M. Pimenta, R. Sarmento, V. de Souza, B. Tomé, J. Instrum. 14 (2019) C07002, 10.1088/1748-0221/14/07/C07002
  26. Numerical modeling of cosmic-ray transport in the heliopshere and interpretation of proton and helium fluxes in Solar Cycle 24, N. Tomassetti, F. Barao, B. Bertucci, E. Fiandrini, M. Orcinha, Advances in Cosmic-Ray Astrophysics and Related Areas, Volume 64, Issue 12, (2019), 10.1016/j.asr.2019.06.025
  27. Transverse extension of partons in the proton probed in the sea-quark range by measuring the DVCS cross section, COMPASS Collaboration (225 authors), Phys.Lett.B 793 (2019) 188-194, 10.1016/j.physletb.2019.04.038
  28. Measurement of the average shape of longitudinal profiles of cosmic ray air-showers at the Pierre Auger Observatory, The Pierre Auger Collaboration, A. Aab et al, J. Cosmol. Astropart. Phys. 3 (2019) 018, 10.1088/1475-7516/2019/03/018
  29. Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons, COMPASS Collaboration (205 authors), Nucl. Phys. B 940 (2019) 34-53, 10.1016/j.nuclphysb.2018.12.024
  30. PICOSEC-Micromegas: Robustness measurements and study of different photocathode materials, M. Gallinaro et al., J.Phys.Conf.Ser. 1312 (2019) no.1, 012012
  31. Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory, B. Aharmim et al. (SNO Collaboration), Phys. Rev. D 99, 032013 (2019), 10.1103/PhysRevD.99.032013
  32. Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission, M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto, IEEE Transactions on Nuclear Science Volume: 66 Issue: 7 ,1770 - 1777, 10.1109/TNS.2019.2900398
  33. Compton polarimetry with a multi-layer CdTe focal plane prototype, M. Moita, E. Caroli, J.M. Maia, R.M. Curado da Silva, N. Auricchio, J.B. Stephen, M. Páscoa, A.M.F. Trindade, Nucl. Instr. Meth. A, Vol. 918, 2019, pp. 93-98, 10.1016/j.nima.2018.10.192
  34. Gravitational wave and collider probes of extended Higgs sectors with a low cutoff, Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP), Eur. Phys. J. C (2019) 79: 156, 10.1140/epjc/s10052-019-6655-1
  35. Search for invisible modes of nucleon decay in water with the SNO+ detector, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 032008 (2019), 10.1103/PhysRevD.99.032008
  36. GUIMesh: a tool to import STEP geometries into Geant4 via GDML, M. Pinto, P. Gonçalves, Computer Physics Communications, Volume 239, June 2019, Pages 150-156,10.1016/j.cpc.2019.01.024
  37. Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 012012 (2019), 10.1103/PhysRevD.99.012012
  38. Measurement of proton induced gamma-ray emission cross sections on Na from 1.0 to 4.1 MeV, M. Chiari, et al., Nucl. Instr. and Meth. in Phys. B 441, 108 (2019), 10.1016/j.nimb.2017.01.043
  39. Properties of the CsI(Tl) detector elements of the CALIFA detector A. Knyazev, et al., Nucl. Instr. and Meth. in Phys. A 940, 393 (2019) 10.1016/j.nima.2019.06.045
  40. Measurement of neutron production in atmospheric neutrino interactions at the Sudbury Neutrino Observatory SNO Collaboration Phys. Rev. D 99, 112007 (2019) 10.1103/PhysRevD.99.112007
  41. Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
  42. Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
  43. Tests of Lorentz invariance at the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Phys. Rev. D 98, 112013 10.1103/PhysRevD.98.112013
  44. Measurement of differential cross sections for Z boson pair production in association with jets at $sqrt{s} =$ 8 and 13 TeV CMS collaboration (2303 authors) Phys.Lett. B789 (2019) 19-44 10.1016/j.physletb.2018.11.007
  45. Correlated long-range mixed-harmonic fluctuations measured in $pp$, $p$+Pb and low-multiplicity Pb+Pb collisions with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B789 (2019) 444-471 10.1016/j.physletb.2018.11.065
  46. Measurements of gluon-gluon fusion and vector-boson fusion Higgs boson production cross-sections in the $H o WW^{ast} o e umu u$ decay channel in $pp$ collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2935 authors) Phys.Lett. B789 (2019) 508-529 10.1016/j.physletb.2018.11.064
  47. Measurement of photon–jet transverse momentum correlations in 5.02 TeV Pb + Pb and $pp$ collisions with ATLAS ATLAS collaboration (2924 authors) Phys.Lett. B789 (2019) 167-190 10.1016/j.physletb.2018.12.023
  48. Search for dark matter particles produced in association with a top quark pair at $sqrt{s} =$ 13 TeV CMS collaboration (2304 authors) Phys.Rev.Lett. 122 (2019) 011803 10.1103/PhysRevLett.122.011803
  49. Search for light resonances decaying to boosted quark pairs and produced in association with a photon or a jet in proton-proton collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2885 authors) Phys.Lett. B788 (2019) 316-335 10.1016/j.physletb.2018.09.062
  50. Seleção de Atributos de Dados Inconsistentes em ambiente HDF5+Python na cloud INCD; João Apolónia, Luís Cavique, Universidade Aberta, DCeT https://repositorioaberto.uab.pt/bitstream/10400.2/8912/1/184-Texto%20Artigo-680-1-10-20191206.pdf
  51. Search for Higgs boson pair production in the $gammagammamathrm{boverline{b}}$ final state in pp collisions at $sqrt{s}=$ 13 TeV CMS collaboration (2285 authors) Phys.Lett. B788 (2019) 7-36 10.1016/j.physletb.2018.10.056
  52. Measurement of differential cross sections for inclusive isolated-photon and photon+jets production in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2299 authors) Eur.Phys.J. C79 (2019) 20 10.1140/epjc/s10052-018-6482-9
  53. Search for heavy charged long-lived particles in proton-proton collisions at $sqrt{s} = 13$ TeV using an ionisation measurement with the mbox{ATLAS} detector ATLAS collaboration (2933 authors) Phys.Lett. B788 (2019) 96-116 10.1016/j.physletb.2018.10.055
  54. Search for low-mass resonances decaying into bottom quark-antiquark pairs in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2292 authors) Phys.Rev. D99 (2019) 012005 10.1103/PhysRevD.99.012005
  55. Search for pair production of Higgs bosons in the $bar{b}bar{b}$ final state using proton-proton collisions at $sqrt{s} = 13$ TeV with the ATLAS detector ATLAS collaboration (2901 authors) JHEP 1901 (2019) 030 10.1007/JHEP01(2019)030
  56. Electroluminescence TPCs at the Thermal Diffusion Limit NEXT collaboration (81 authors) JHEP 1901 (2019) 027 10.1007/JHEP01(2019)027
  57. Search for long-lived particles in final states with displaced dimuon vertices in $pp$ collisions at $sqrt{s}=$ 13 TeV with the ATLAS detector ATLAS collaboration (2920 authors) Phys.Rev. D99 (2019) 012001 10.1103/PhysRevD.99.012001
  58. Search for heavy Majorana or Dirac neutrinos and right-handed $W$ gauge bosons in final states with two charged leptons and two jets at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2924 authors) JHEP 1901 (2019) 016 10.1007/JHEP01(2019)016
  59. Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement, Rodrigues, S, Sinval, J, Queirós, C, Marôco, J, Kaiseler, M., Int J Select Assess. 2019; 27: 152– 168. https://doi.org/10.1111/ijsa.12238

Thesis / Dissertation

PhD Thesis

Master Thesis

  1. Scintillation detectores for dosimetric monitoring in interventional cardiology
  2. New observables and techniques for the study of jets in hadron collisions
  3. Study of the exclusive production of the top quark in the CMS experiment
  4. Searching for jet quenching in small systems
  5. Topic modelling for jets
  6. Thermal Study of a Module for SWGO (Southern Hemisphere Wide field-of-view Gamma-ray Observatory)
  7. Conception of a Tissue Equivalent Plastic Dosimeter Using Scintillating Fibres for Hadronic Therapy and Space Radiation Effects Studies
  8. Probing the quark gluon plasma medium through B meson production measurements in PbPb collisions at the LHC
  9. The impact of electric field distortion on CP violation studies: study of space charge effects on protoDUNE
  10. Machine Learning in Analytical Chemistry: Applying Innovative Data Analysis Methods Using Chromatographic Techniques
  11. Estudo da resposta dosimétrica de cintiladores plásticos em feixes de protões
  12. Analysis of in-flight data on the AlphaSat radiation Environment Effects Facility
  13. PlaCor: Plataforma para a Computação Orientada ao Recurso
  14. Treino de redes neuronais profundas de forma distribuída
  15. Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
  16. Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.
  17. Santos, C. 2019. Estado atual das populações de berbigão (Cerastoderma spp) no estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências. 64 pp.
  18. Ferreira, M. 2019. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 45 pp.

Conference Paper

Conference Poster

2018

Journal Paper with direct contribution

  1. Llarena, Anna;Katrin, et al. "INNUENDO: a cross sectoral platform for the integration of genomics in the surveillance of food borne pathogens." EFSA Supporting Publications 15.11 (2018): 1498E. https://efsa.onlinelibrary.wiley.com/doi/abs/10.2903/sp.efsa.2018.EN-1498
  2. Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November. Nonintrusive Monitoring of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
  3. Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. Response Time Characterization of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
  4. F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores”, 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
  5. F.J.A.L. Cruz and J.P.B. Mota, “Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores”, 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
  6. F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes”, XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
  7. Rodrigues, S., Sinval, J., Queirós, C., Marôco, J., & Kaiseler, M. (2019). Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment, 27(2), 152–168. https://doi.org/10.1111/ijsa.12238
  8. Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019). Quality of Work Life Scale: Validity evidence from Brazil, and Portugal. Applied Research in Quality of Life. https://doi.org/10.1007/s11482-019-09730-3
  9. haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, ... BioRxiv, 441774
  10. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
  11. Observation of Fine Time Structures in the Cosmic Proton and Helium Fluxes with the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration Phys. Rev. Lett. 121, 051101
  12. Testing Diffusion of Cosmic Rays in the Heliosphere with Proton and Helium Data from AMS N. Tomassetti, F. Barão, B. Bertucci, E. Fiandrini, J. L. Figueiredo, J. B. Lousada, and M. Orcinha Phys. Rev. Lett. 121, 251104
  13. Search for the standard model Higgs boson produced in association with top quarks and decaying into a b(b)overbar pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration Phys. Rev. D 97 (2018) 072016
  14. Search for flavour-changing neutral current top-quark decays t -> qZ in proton-proton collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 7 (2018) 176
  15. The High Voltage distribution system of the ATLAS Tile Calorimeter and its performance during data taking D. Calvet, S. Calvet, R. Chadelas, D. Cinca, Ph. Grenier, P. Gris, P. Lafarguette, D. Lambert, M. Marjanovi, L. F. Oleiro Seabra, F. M. Pedro Martins, J. B. Pena Madeira Gouveia De Campos, S. M. Romano Saez, P. Rosnet, C. Santoni, L. Valéry, F. Vazeille JINST 13 (2018) P08006
  16. Search for pair production of heavy vector-like quarks decaying into high-(PT) W bosons and top quarks in the lepton-plus-jets final state in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 8 (2018) 048
  17. CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
  18. Observation of Higgs boson production in association with a top quark pair at the LHC with the ATLAS detector ATLAS Collaboration Phys. Lett. B 784 (2018) 173, arXiv:1806.00425 [hep-ex]
  19. Observation of H -> b(b)over-bar decays and V H production with the ATLAS detector ATLAS Collaboration Phys. Lett. B 786 (2018) 59-86
  20. Search for charged Higgs bosons decaying into top and bottom quarks at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration JHEP 1811 (2018) 085
  21. Combination of the Searches for Pair-Produced Vectorlike Partners of the Third-Generation Quarks at root s=13 TeV with the ATLAS Detector ATLAS Collaboration Phys. Rev. Lett. 121 (2018) 211801
  22. Operation and performance of the ATLAS Tile Calorimeter in Run 1 ATLAS collaboration Eur.Phys.J. C78 (2018) 987
  23. Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
  24. Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
  25. MARTA: A high-energy cosmic-ray detector concept with high-accuracy muon measurement P. Abreu, S. Andringa, P. Assis, A. Blanco, V. Barbosa Martins, P. Brogueira, N. Carolino, L. Cazon, M. Cerda, G. Cernicchiaro, R. Colalillo, R. Conceição, O. Cunha, R. M. de Almeida, V. de Souza, F. Diogo, C. Dobrigkeit, J. Espadanal, C. Espirito-Santo, M. Ferreira, P. Ferreira, P. Fonte, U. Giaccari, P. Gonçalves, F. Guarino, O. C. Lippmann, L. Lopes, R. Luz, D. Maurizio, F. Marujo, P. Mazur, L. Mendes, A. Pereira, M. Pimenta, R. R. Prado, J. Rídký, R. Sarmento, C. Scarso, R. Shellard, J. Souza, B. Tomé, Eur. Phys. J. C (2018) 78: 333
  26. The MARTA (Muon Array with RPCs for Tagging Air showers) Front-End acquisition system P. Assis, A. Blanco, P. Brogueira, M. Ferreira and R. Luz IEEE Transactions on Nuclear Science ( Volume: 65 , Issue: 12 , Dec. 2018 )2920 - 2928
  27. Towards a Next Generation of CORSIKA: A Framework for the Simulation of Particle Cascades in Astroparticle Physics Ralph Engel, Dieter Heck, Tim Huege, Tanguy Pierog, Maximilian Reininghaus, Felix Riehn, Ralf Ulrich, Michael Unger, Darko Veberič Comput Softw Big Sci (2019) 3: 2
  28. Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
  29. From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
  30. Observation of proton-tagged, central (semi)exclusive production of high-mass lepton pairs in pp collisions at 13 TeV with the CMS-TOTEM precision proton spectrometer CMS and TOTEM Collaborations J. High Energy Phys. 7 (2018) 153
  31. Charged particle timing at sub-25 picosecond precision: the PICOSEC detection concept M. Gallinaro et al. arXiv:1806.04395
  32. Search for top squarks decaying via four-body or chargino-mediated modes in single-lepton final states in proton-proton collisions at $sqrt{s}$=13~TeV P. Bargassa, C. Beirao et al J. High Energy Phys. 9 (2018) 065
  33. PICOSEC: Charged particle timing at sub-25 picosecond precision with a Micromegas based detector M. Gallinaro et al. Nucl. Instrum. Meth. A 903, 317 (2018)
  34. Deep Diffused APDs for Charged Particle Timing Applications: Performance after Neutron Irradiation M. Gallinaro et al. arXiv:1812.08433
  35. Transverse-momentum-dependent multiplicities of charged hadrons in muon-deuteron deep inelastic scattering COMPASS Collaboration Phys. Rev. D 97, 032006 (2018)
  36. New analysis of eta-pi tensor resonances measured at the COMPASS experiment JPAC and COMPASS Collaborations Physics Letters B 779 (2018) 464–472
  37. Longitudinal double-spin asymmetry A1p and spin dependent structure function g1p of the proton at small values of x and Q2 M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 781 (2018) 464-472
  38. Search for muoproduction of X(3872) at COMPASS and indication of a new state X^~(3872) M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 783 (2018) 334–340
  39. K− over K+ multiplicity ratio for kaons produced in DIS with a large fraction of the virtual-photon energy R. Akhunzyanov et al. (COMPASS Coll.) Physics Letters B 786 (2018) 390–398
  40. Light isovector resonances in π−p → π−π−π+p at 190 GeV/c M. Aghasyan et al. (COMPASS Collab.) Phys. Rev. D 98, 092003 (2018)
  41. Azimuthal asymmetries of charged hadrons produced in high-energy muon scattering off longitudinally polarised deuterons C. Adolph et al (COMPASS Coll.) Eur. Phys. J. C (2018) 78:952
  42. Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons M.G. Alexeev et al (COMPASS Coll.) Nucl. Phys. B 940 (2019) 34–53
  43. Design and expected performance of a novel hybrid detector for very-high-energy gamma astrophysics P. Assis, U. Barres de Almeida, A. Blanco, R. Conceição, B. D'Ettore Piazzoli, A. De Angelis, M. Doro, P. Fonte, L. Lopes, G. Matthiae, M. Pimenta, R. Shellard, B. Tomé Astropart.Phys. 101 (2018) 36-36
  44. Structure of Be-13 studied in proton knockout from B-14 G. Ribeiro, E. Nacher, O. Tengblad, et al. Phys. Rev. C 98, 024603 (2018)
  45. Global constraints on top quark anomalous couplings Frederic Deliot, Ricardo Faria, Miguel C. N. Fiolhais, Pedro Lagarelhos, Antonio Onofre, Christopher M. Pease, Ana Vasconcelos Phys. Rev. D 97 (2018) 013007
  46. Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
  47. Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
  48. From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
  49. Sensitivity of jet substructure to jet-induced medium response José Guilherme Milhano, Urs Achim Wiedemann, Korinna Christine Zapp Phys.Lett. B779 (2018) 409-413
  50. Probing the time structure of the quark-gluon plasma with top quarks Liliana Apolinário, José Guilherme Milhano, Gavin P. Salam, Carlos A. Salgado Phys.Rev.Lett. 120 (2018) no.23, 232301
  51. Novel subjet observables for jet quenching in heavy-ion collisions Liliana Apolinário, José Guilherme Milhano, Mateusz Ploskon, Xiaoming Zhang Eur.Phys.J. C78 (2018) no.6, 529
  52. CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
  53. The fate of quarkonia in heavy-ion collisions at LHC energies: a unified description of the sequential suppression patterns Pietro Faccioli, Carlos Lourenço Eur.Phys.J. C78 (2018) 731
  54. CP in the dark Duarte Azevedo, Pedro M. Ferreira, M. Margarete Muhlleitner, Shruti Patel, Rui Santos, Jonas Wittbrodt J. High Energy Phys. 11 (2018) 091
  55. Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
  56. “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
  57. “Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
  58. “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes” F.J.A.L. Cruz and J.P.B. Mota XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
  59. Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) International Journal of Selection and Assessment, 27(2), 152–168.
  60. Quality of Work Life Scale: Validity evidence from Brazil, and Portugal Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) Applied Research in Quality of Life
  61. A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, .. BioRxiv, 441774
  62. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
  63. Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
  64. Nonintrusive Monitoring of Microservice-Based Systems Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
  65. Response Time Characterization of Microservice-Based Systems Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
  66. Near-future changes in storm surges along the Atlantic Iberian coast, Natural Hazards, Fortunato, A.B., Meredith, E.P., Rodrigues, M., Freire, P., Feldmann, H. 2018. https://doi.org/10.1007/s11069-018-3375-z
  67. umd-verification: Automation of Software Validation for the EGI federated e-Infrastructure, Pablo Orviz, Joao Pina, Álvaro López, Isabel Campos, Jorge Gomes, Mario David, J Grid Computing (2018) 16: 683. https://doi.org/10.1007/s10723-018-9454-2
  68. INDIGO-DataCloud: a platform to facilitate seamless access to e-infrastructures, D. Salomoni , I. Campos, L. Gaido, J. Marco de Lucas, P. Solagna, J. Gomes, et al, J Grid Computing (2018) 16: 381. https://doi.org/10.1007/s10723-018-9453-3
  69. Enabling rootless Linux Containers in multi-user environments: the udocker tool, Jorge Gomes, Isabel Campos, Emanuele Bagnaschi, Mario David, Luis Alves, Joao Martins, Joao Pina, Alvaro Lopez-Garcia, Pablo Orviz, Computer Physics Communications, Volume 232, 2018, Pages 84-97, ISSN 0010-4655, DOI: 10.1016/j.cpc.2018.05.021
  70. Running high resolution coastal models in forecast systems: moving from workstations and HPC cluster to cloud resources, João Rogeiro, Marta Rodrigues, Alberto Azevedo, Anabela Oliveira, João Paulo Martins, Mário David, João Pina, Nuno Dias, Jorge Gomes, Advances in Engineering Software, Volume 117, 2018, Pages 70-79, ISSN 0965-9978, DOI: 10.1016/j.advengsoft.2017.04.002
  71. Electrons in GEO measured with the ESA Multi-Functional Spectrometer during the January 2014 SEP, L. Arruda, P. Goncalves, A. Marques, J. Costa-Pinto, A. Aguilar, P. Marinho, T. Sousa, H. Evans, P. Nieminen, IEEE TNS Vol65, Issue 8 pp 1540 - 1545 August 18, DOI: 10.1109/TNS.2018.2854161
  72. Assessment of radiation exposure in manned missions to Mars for three mission profiles, A. L. Casimiro, J. M. Sampaio, P. Gonçalves, M. Pinto, Radiation and Applications Journal (RAD Journal), Volume 3, Issue 1, pp. 27-33, March 2018, DOI: 10.21175/RadJ.2018.01.006
  73. Optimization of the signal-to-background ratio in prompt gamma imaging using energy- and shifting time-of-flight discrimination: experiments with a scanning parallel-slit collimator, P. Cambraia Lopes, P. Crespo, J. Huizenga, D.R. Schaart, IEEE Trans. Radiat. Plasma Med. Sci., vol. 2, pp. 510-9, DOI: 10.1109/TRPMS.2018.2846612
  74. Fast phylogenetic inference from typing data, by J. A. Carriço, M. Crochemore, A. P. Francisco, S. P. Pissis, B. Ribeiro‑Gonçalves and C. Vaz. Algorithms for Molecular Biology, 13:4, 2018, DOI: 10.1186/s13015-017-0119-7
  75. Dynamic phylogenetic inference for sequence-based typing data, by A. P. Francisco, M. Nascimento and C. Vaz. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 604-604, 2017, DOI: 10.1145/3107411.3108214
  76. An approach to evolve and exploit repertoires of general robot behaviours, Jorge Gomes, Sancho Moura Oliveira, Anders Lyhne Christensen, Swarm and Evolutionary Computation, Volume 43, 2018, Pages 265-283, ISSN 2210-6502, https://doi.org/10.1016/j.swevo.2018.06.009.
  77. A biobjective feature selection algorithm for large omics datasets, Cavique, L, Mendes, AB, Martiniano, HFMC, Correia, L., Expert Systems. 2018; 35:e12301. https://doi.org/10.1111/exsy.12301

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Thesis / Dissertation

PhD Thesis

Master Thesis

Conference Paper

Conference Poster

2017

Journal Paper with direct contribution

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Thesis / Dissertation (*)

Phd Thesis

(*) Ended in 2017

Master Thesis

Conference Paper

Conference Poster

2023