Scientific Publications

Scientific publications which used INCD resources

2024
2025
2023
2022
2021
2020
2019
2018
2017

2024

International articles with referee

Melnik, T., Sinval, J., Pinho, V. D. de, Junior, J. A. S. H., Oliveira, M. da S., & Lopes, F. M. (2025). Knowledge and use of evidence-based practice in psychology in the clinical practice of Brazilian psychologists: A cross-sectional study. Healthcare, 13(4), 1–18. https://doi.org/10.3390/healthcare13040431
Nevado B, Atchison GW, Bridges EL, Orzell S, Filatov D, Hughes CE. Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Paplionoideae) in Florida. Molecular Ecology (accepted).
Andrade, R., Laranjeiro, N., & Vieira, M. (2024). BugHub: A Large Scale Issue Report Dataset. In 19th European Dependable Computing Conference - EDCC, accepted for publication. Leuven.
Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Correlates of burnout and dropout intentions in medical students: A cross-sectional study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.08.003
"Leveraging LLMs for On-the-fly Instruction Guided Image Editing" dos autores Rodrigo Santos, João Silva e António Branco EPIA 2024, International Conference on Artificial Intelligence (https://doi.org/10.48550/arXiv.2403.08004)
Morais, I., Carneiro, F. A., Sinval, J., Costa, P. A., & Leal, I. (2024). The Walsh Family Resilience Questionnaire: Validity evidence from Portugal. Family Relations. https://doi.org/10.1111/fare.13078
Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Exploring the impact of depression, anxiety, stress, academic engagement, and dropout intention on medical students’ academic performance: A prospective study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.09.116
Melo, L. E. A. de, Sinval, J., & Isler, C. A. (2025). Prospective avenues in travel behavior research supported by the cognitive dissonance theory: A scoping review. Transportation Research Part F: Traffic Psychology and Behaviour, 109, 501–519. https://doi.org/10.1016/j.trf.2024.12.022
Galamba, N., Sickle Cell Hemoglobin “Drugged” with Cyclic Peptides is Aggregation Incompetent, J. Phys. Chem. B, 128, 36, 8662, 2024 URL: https://doi.org/10.1021/acs.jpcb.4c03805
Martins, G., Galamba, N., Wild Type α-Synuclein Structure and Aggregation: A Comprehensive Coarse-Grained and All-Atom Molecular Dynamics Study, J. Chem. Inf. Model., 64, 15, 6115, 2024 URL: https://doi.org/10.1021/acs.jcim.4c00965
Gomes I., Martins, G., Galamba N., Essential Dynamics of Ubiquitin in Water and in a Natural Deep Eutectic Solvent, Phys. Chem. Chem. Phys., 26, 18244, 2024 URL: htps://pubs.rsc.org/en/Content/ArticleLanding/2024/CP/D4CP01773K 1.Iana Lychko; Cátia Lopes Soares; Barbosa, A.J.M.; Tomás Rosa Calmeiro; Rodrigo Ferrão de Paiva Martins; Ana Margarida Gonçalves Carvalho Dias; Ana Cecília Afonso Roque. "Kinetics of charge-dependent reversible condensation of reflectin nanostructures". Materials Advances (2024): https://doi.org/10.1039/D4MA00788C.

Oral Presentations

Proceeding in international conferences

Title:
- date:
- Authors:

Posters (internation meetings)

Galamba, N. Cyclic Peptides as Protein Aggregation Inhibitors for Globular and Intrinsically Disordered Disease-Related Proteins, The Leuven Protein Aggregation Meeting (2nd edition), September 11-13, 2024, Leuven, Belgium – poster
Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Gonçalves Carvalho Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "Molecular Modeling in Biotechnology: Design and Discovery of small molecule adsorbents". Trabalho apresentado em EuroQSAR 2024, 2024.
Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "In silico Affinity Ligands: Design and Discovery of small molecule adsorbents". Trabalho apresentado em Bpi Europe 2024, 2024.
Moura Barbosa, Arménio J.; Soares, Cátia Lopes; Esteves, Carina; Nurrito, Ariana; Lychko, Iana; Ana Margarida Dias; Pina, Ana Sofia; Roque, Ana Cecília Afonso. "From code to structure: molecular modeling in biomaterials assembly". Trabalho apresentado em SUPRAlife Second School – “Bioinspired Supramolecular Self-Assemblies, 2024.

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

Ongoing

Master Thesis

Vasco Neto – MSc, “Probing the Anti-Sickling Power of Distinct Drugs in Sickle Cell Disease”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
Inês Gomes – MSc, “Probing the Stability of Biomolecules in Deep Eutectic Solvents”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
Catarina Nascimento – MSc, “Molecular Mechanisms of Amyloid Aggregation in Neurodegenerative Diseases”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
11/2024, Computational Modeling of Biopharmaceuticals Purification Systems, Jéssica Rodrigues, Master in Computational Biology and Bioinformatics, FCT UNL.

Finished

Ongoing

Patents

Datasets

Courses

Course for Biochemistry BSc Degree: Introduction to Biomolecular Simulation, at FCT UNL. The course aims to introduce students to the field of biomolecular simulation. HPC computing time for students.

2025

International articles with referee

Storti, B. C., Sinval, J., Munro, Y. L., Diaz, F. J. M., & Sticca, M. G. (2025). Advisor-advisee relationship and the organizational culture of doctoral programs on doctoral students’ mental health and academic performance: A scoping review protocol. MethodsX. https://doi.org/10.1016/j.mex.2025.103433

Oral Presentations

Proceeding in international conferences

Title: "A Scalable Model for Frequency Distribution of Low Occurrence Multi-words Towards Handling Very Large Spectrum of Text Corpora Sizes"
- date: ECML PKDD 2025 15 a 19 de Setembro, no Porto, Portugal
- Authors Joaquim Silva e José Cardoso e Cunha

Posters (internation meetings)

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

Ongoing

Master Thesis

Carvalho, I. C. (2025). Clinical reasoning tasks perceptions and associated variables in medical students: A cross-sectional study [Master’s dissertation, University of Lisbon].

Finished

Ongoing

Patents

Datasets

2023

International articles with referee

Gonçalves, M., Bernardo, C., Bernardino, M., & Soares, C. G. (2022). Climate change impacts on the wave energy in the Azores Islands. Trends in Renewable Energies Offshore, 43-51.
CAMPOS, S., RODRIGO, A.P., MOUTINHO CABRAL, I. MENDES, V., MANADAS, B., D'AMBROSIO, M. & COSTA, P.M. (2023). An exploration of novel bioactives from the venomous marine annelid Glycera alba. Toxins, 15, 655 (doi: 10.3390/toxins15110655).
Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano et al. (2023) "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Genome Medicine 15: 43. http://dx.doi.org/10.1186/s13073-023-01196-1.
Santos, João Dourado; Sobral, Daniel; Pinheiro, Miguel; Isidro, Joana et al. (2023) “INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance”. Research Square. https://doi.org/10.21203/rs.3.rs-3556988/v1.
Substitution Models of Protein Evolution with Selection on Enzymatic Activity Ferreiro D., Khalil R., Sousa S.F., and Arenas M. Molecular Biology and Evolution 41 (2) (2024) Article | DOI: 10.1093/molbev/msae026
Exploiting Locusta migratoria as a source of bioactive peptides with anti-fibrosis properties using an in silico approach Teixeira C.S.S., Biltes R., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food and Function 15 (2) pp.493-502 (2023) Article | DOI: 10.1039/d3fo04246d
Crystal structures of Streptomyces tsukubaensis sigma factor SigG1 and anti-sigma RsfG Leite J.P., Lourenco F., Oliveira R., Sousa S.F., Mendes M.V., and Gales L. Journal of Structural Biology 215 (4) (2023) Article | DOI: 10.1016/j.jsb.2023.108038
In silico identification of novel PqsD inhibitors: promising molecules for quorum sensing interference in Pseudomonas aeruginosa Vieira T.F., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering 9 (1) pp.7-19 (2023) Article | DOI: 10.1039/d3me00107e
Use of lysinated multiwalled carbon nanotubes with carbohydrate ligands as a doxorubicin nanocarrier: A molecular dynamics analysis Martins F.G., Thakur C.K., Karthikeyan C., Moorthy N.S.H.N., and Sousa S.F. Carbon Trends 12 (2023) Article | DOI: 10.1016/j.cartre.2023.100280
Modulation of the functional interfaces between retroviral intasomes and the human nucleosome Mauro E., Lapaillerie D., Tumiotto C., Charlier C., Martins F., Sousa S.F., Metifiot M., Weigel P., Yamatsugu K., Kanai M., Munier-Lehmann H., Richetta C., Maisch M., Dutrieux J., Batisse J., Ruff M., Delelis O., Lesbats P., and Parissi V. mBio 14 (4) (2023) Article | DOI: 10.1128/mbio.01083-23
An in silico approach to unveil peptides from Acheta domesticus with potential bioactivity against hypertension, diabetes, cardiac and pulmonary fibrosis Teixeira C.S.S., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food Research International 169 (2023) Article | DOI: 10.1016/j.foodres.2023.112847
Structural, physicochemical and anticancer study of Zn complexes with pyridyl-based thiazolyl-hydrazones Araskov J.B., Maciejewska N., Olszewski M., Visnjevac A., Blagojevic V., Fernandes H.S., Sousa S.F., Puerta A., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-de-Luzuriaga J.M., Uguz O., Koca A., Todorovic T.R., and Filipovic N.R. Journal of Molecular Structure 1281 (2023) Article | DOI: 10.1016/j.molstruc.2023.135157
TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa Carneiro J., Magalhaes R.P., de la Oliva Roque V.M., Simoes M., Pratas D., and Sousa S.F. Journal of Computer-Aided Molecular Design 37 (5-6) pp.265-278 (2023) Article | DOI: 10.1007/s10822-023-00505-5
Susana Simões, Miguel Lino, Angela Barrera, Catarina Rebelo, Francesca Tomatis, Andreia Vilaça, Christopher Breunig, Andrea Neuner, João Peça, Ricardo González, Alexandra Carvalho, Stefan Stricker, and Lino Ferreira. ‘Near-infrared light-activated formulation for the spatial controlled release of CRISPR-Cas9 ribonucleoprotein for brain gene editing’, accepted in Angewandte Chemie.
Ricardo D. González, Susana Simões, Lino Ferreira, and Alexandra T. P. Carvalho. ‘Designing Cell Delivery Peptides and SARS-CoV-2-Targeting Small Interfering RNAs: A Comprehensive Bioinformatics Study with Generative Adversarial Network-Based Peptide Design and In Vitro Assays’, Molecular Pharmaceutics, 2023, 20, 12, 6079–6089, doi:10.1021/acs.molpharmaceut.3c00444.
Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Insights into the Degradation of Polymer–Drug Conjugates by an Overexpressed Enzyme in Cancer Cells’, Journal of Medicinal Chemistry, doi: 10.1021/acs.jmedchem.2c01781.
Teodoro, M. C., Conceição, E. M., Sinval, J., de Lourdes, M., & Neufeld, C. B. (2023). Adaptation, confirmatory factor analysis, and psychometric properties of the Brazilian version of the Repetitive Eating Questionnaire. International Journal of Eating Disorders. https://doi.org/10.1002/eat.23943
Mixão, V., Pinto, M., Sobral, D. et al. ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Genome Med 15, 43 (2023). https://doi.org/10.1186/s13073-023-01196-1
João Dourado Santos, Daniel Sobral, Miguel Pinheiro et al. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance, 07 November 2023, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-3556988/v1]
Carvalho J., Faria R., Butlin R.K., Sousa V.C. (2023) poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14185
Carvalho J., Morales H., Faria R., Butlin R.K., Sousa V.C. (2023) Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13834
Casanova, J., Sinval, J., & Almeida, L. (2024). Éxito académico, compromiso y autoeficacia de los estudiantes universitarios de primer año: variables personales y desempeño del primer semestre. Anales de Psicología / Annals of Psychology, 40(1), 44–53. https://doi.org/10.6018/analesps.479151
F.J.A.L. Cruz and J.P.B. Mota, "Partial Denaturation of Double-Stranded DNA on Pristine Graphene under Physiological-like Conditions", Liquids 2023, 3, 168.
F.J.A.L. Cruz and J.P.B. Mota, “Structure and Thermodynamics of Empty Clathrate Hydrates bellow the Freezing Point of H2O”, 14th Int. Chem. Bio. Eng. Conference, Bragança, Portugal, September 2023.
Wang, S., Islam, H., Abdelwahab, H.S., Guedes Soares, C., 2024. Uncertainty analysis of CFD solver for predicting ship responses in head waves, in preparation.
Gomes I., Galamba N., Protein Stability in a Natural Deep Eutectic Solvent: Preferential Hydration or Solvent Slaving?, J. Chem. Phys., 159, 235101, 2023 (URL: https://doi.org/10.1063/5.0177095)
Neto V., Victor BL. , Galamba N., Cyclic Peptides as Aggregation Inhibitors for Sickle Cell Disease, J. Med. Chem., 66, 23, 16062–16074, 2023 (URL: https://doi.org/10.1021/acs.jmedchem.3c01484)
Martins, G., Nascimento, C., Galamba, N., Mechanistic Insights into Polyphenols’ Aggregation Inhibition of α-Synuclein and Related Peptides, ACS, Chem. Neurosci., 14, 10, 1905–1920, 2023 (URL: https://doi.org/10.1021/acschemneuro.3c00162)
Monteiro, H., Paiva, A., Duarte, R.C., Galamba, N., On the not so anomalous water-induced structural transformations of choline chloride–urea (reline) deep eutectic system, Physical Chemistry Chemical Physics 25 (1), 439-454, 2023 (URL: https://doi.org/10.1039/D2CP04139A)
Dias, A. M. G. C., Moreira, I. P., Lychko, I., Soares, C. L., Nurrito, A., Barbosa, A. J. M., Lutz-Bueno, V., Mezzenga, R., Carvalho, A. L., Pina, A. S. & Roque, A. C. A. (2023). Hierarchical self-assembly of a reflectin-derived peptide. Front. Chem., 11.
Almeida, J., Palma, C., Félix, P.M., Brito, A.C. (2023). Long-term variation of dissolved metals and metalloid in the waters of an Atlantic mesotidal estuary (Sado Estuary, Portugal). Marine Pollution Bulletin, 188, 114615. HYPERLINK "https://doi.org/10.1016/j.marpolbul.2023.114615"https://doi.org/10.1016/j.marpolbul.2023.114615
Brito, A.C., Pereira, H., Picado, A., Cruz, J., Cereja, R., Biguino, B., Chainho, P., Nascimento, A., Carvalho, F., Cabral, S., Santos, C., Palma, C., Borges, C:, Dias, J.M. (2023). Increased oyster aquaculture in the Sado Estuary: how to ensure ecosystem sustainability? Science of the Total Environment, 855, 158898.
Favareto, L., Brotas, V., Rudorff, N., Zacarias, N., Tracana, A., Lamas, L., Nascimento, A., Ferreira, A., Gomes, M., Borges, C., Palma, C., Brito, A.C. (2023). Response of phytoplankton to coastal upwelling: the importance of temporal and spatial scales. Limnology and Oceanography, 68, 1376-1387. https://doi.org/10.1002/lno.12353
Ferreira, A., Garrido, S., Costa, J.L., Teles-Machado, A., Brotas, V., Brito, A.C. (2023). What drives the recruitment of European sardine in Atlanto-Iberian waters (SW Europe)? Insights from a 22-year analysis. Science of the Total Environment, 881, 163421. HYPERLINK "https://doi.org/10.1016/j.scitotenv.2023.163421"https://doi.org/10.1016/j.scitotenv.2023.163421.
Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Pereira, E., Belo, A.F., Portela, T., Telhado, A., & Quintella, B.R. Upstream movement of juvenile eels (Anguilla anguilla L.) in a southwestern European river. Environ Biol Fish 106, 1313–1325. https://doi.org/10.1007/s10641-023-01417-x
França, S. Changes in the Functional Role of the Tejo Estuary (Portugal, Europe) According to Fish Ecological Guilds. Fishes 2023, 8, 545. https://doi.org/10.3390/fishes8110545
João M. Miranda, Guilherme Osswald, Fernando A. Castro, Rui A. Rego, (2023). OpenFOAM validation for indoor ventilation applications, CILAMCE-2023, Proceedings of the XLIV Ibero-Latin-American Congress on Computational Methods in Engineering, ABMEC Porto, Portugal.
Machine learning approach to the background reduction in singly charged cosmic-ray isotope measurements with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA (2023) 168644 10.1016/j.nima.2023.168644
The ATLAS Experiment at the CERN Large Hadron Collider: A Description of the Detector Configuration for Run 3 ATLAS Collaboration (R. Pedro et al.) CERN-EP-2022-259 10.48550/arXiv.2305.16623
Laser Calibration of the ATLAS Tile Calorimeter during LHC Run 2 R. Pedro, B. Pereira et al. JINST 18 (2023) 06, P06023 10.1088/1748-0221/18/06/P06023
Search for pair-production of vector-like quarks in pp collision events at TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector ATLAS Collaboration (N. Castro, T. Vale et. al ) Phys. Lett. B 843 (2023) 138019 10.1016/j.physletb.2023.138019
Search for single production of vector-like T quarks decaying into Ht or Zt in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro et al.) J. High Energy Phys. 8 (2023) 153 10.1007/JHEP08(2023)153
Search for flavor-changing neutral-current couplings between the top quark and the Z boson with proton-proton collisions at √ s = 13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro, A. Peixoto et al) Phys. Rev. D 108, 032019 10.1103/PhysRevD.108.032019
Anomaly detection search for new resonances decaying into a Higgs boson and a generic new particle X in hadronic final states using s√=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (I. Ochoa et. al. ) Phys. Rev. D 108 (2023) 052009 10.1103/PhysRevD.108.052009
Luminosity determination in pp collisions at s√=13 TeV using the ATLAS detector at the LHC ATLAS Collaboration (R. Pedro et al.) Eur. Phys. J. C 83 (2023) 982 10.1140/epjc/s10052-023-11747-w
Demonstrating Agreement between Radio and Fluorescence Measurements of the Depth of Maximum of Extensive Air Showers at the Pierre Auger Observatory The Pierre Auger Collaboration PRL (sibling of the PRD)
Ground observations of a space laser for the assessment of its in-orbit performance The Pierre Auger Collaboration Optica
Ultra high energy cosmic rays The intersection of the Cosmic and Energy Frontiers A. Coleman et al. (98 authors) Astropart Phys. 147 (2023) 102794 10.1016/j.astropartphys.2023.102819
A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory Pierre Auger Collaboration (379 authors) Astrophysical Journal Supplement 264 (2023) 2, 50 10.3847/1538-4365/aca537
Universality of the muon component of extensive air showers Lorenzo Cazon, Ruben Conceição and Felix Riehn JCAP03(2023)022 10.1088/1475-7516/2023/03/022
Outdoor systems performance and upgrade L. Lopes et al., NIMA 1054, 168446, 2023 10.1016/j.nima.2023.168446
Development of the CMS detector for the CERN LHC Run 3 CMS Collaboration arXiv:2309.05466, accepted for publication in the Journal of Instrumentation.
Sub-25 ps timing measurements with 10 x 10 cm2 PICOSEC Micromegas detectors M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167687 10.1016/j.nima.2022.167687
Towards robust PICOSEC Micromegas precise timing detectors M.Gallinaro et al. JINST 18 (2023) 07, C07018
A large area 100-channel PICOSEC Micromegas detector with time resolution at the 20 ps level M.Gallinaro et al. JINST 18 (2023) 07, C070
Search for top squarks in the four-body decay mode with single lepton final states in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) J. High Energy Phys. 6 (2023) 60 10.1007/JHEP06(2023)060
Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) Phys. Lett. B 842 (2023) 137531 10.1016/j.physletb.2022.137531
Search for high-mass exclusive gammagamma->WW and gammagamma->ZZ production in proton-proton collisions at 13 TeV CMS and TOTEM Collaborations JHEP 07 (2023) 229
Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations JINST 18 (2023) 09, P09009
A next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. (599 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 013001 10.1088/1361-6471/ac841a
Energy resolution of the LZ detector for high-energy electronic recoils G. Pereira et al J. Instrum. 18 (2023) C04007 10.1088/1748-0221/18/04/C04007
The MIGDAL experiment: Measuring a rare atomic process to aid the search for dark matter H. M. Araujo et al. (36 authors) Astropart Phys. 151 (2023) 102853 10.1016/j.astropartphys.2023.102853
First Dark Matter Search Results from the LUX-ZEPLIN (LZ) Experiment J. Aalbers et al. (LUX-ZEPLIN Collaboration) Phys. Rev. Lett. 131 (2023) 041002 10.1103/PhysRevLett.131.041002
Production and optical characterisation of blended Polyethylene Tethraplate (PET)/Polyethylene Naphtalate (PEN) scintillator samples P. Conde Muíño, J. A. Covas, A. Gomes, L. Gurriana, R. Machado, T. Martins, P. Mendes, R. Pedro, B. Pereira, A. J. Pontes, H. Wilkens arXiv:2312.14790
Dual-Polarity Ion Drift Chamber: Experimental results with Xe-S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 10.1016/j.nima.2022.167575
A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 10.1016/j.nima.2022.167603
The new HADES ToF Forward Detector A. Blanco et al., NIMA 1050, 168182, 2023 10.1016/j.nima.2023.168182
Evaluation of effective dose for gamma-rays of Terrestrial Gamma-ray Flashes in aviation: spectral- and atmosphere-effects J.M. Maia, R.M. Curado da Silva, Joana Mingacho Radiation Physics and Chemistry 215 (2024) 111332
First results on FHM - a Floating Hole Multiplier V. Chepel, G.Martinez-Lema, A.Roy, A.Breskin J. Instrum. 18 (2023) P05013 10.1088/1748-0221/18/05/P05013
Timing resistive plate chambers for thermal neutron detection with 3D position sensitivity L. M. S. Margato, G. Canezin, A. Morozov, A. Blanco, J. Saraiva, L. Lopes, P. Fonte L. M.S. Margato et al., Nuclear Instruments and Methods in Physics Research Section A, Volume 1052, July 2023, 168267 10.1016/j.nima.2023.168267
Low-energy physics in neutrino LarTPCs S. Andringa et al. (34 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 033001 10.1088/1361-6471/acad17
Evidence of antineutrinos from distant reactors using pure water at SNO+ SNO+ Collaboration Phys. Rev. Lett. 130, 091801 (2023) 10.1103/PhysRevLett.130.091801
Measurement of the total neutron cross section on argon in the 20 to 70 keV energy range S. Andringa, et al (ARTIE Collaboration) Phys. Rev. C 108, L011601 10.1103/PhysRevC.108.L011601
Heavy Baryon Spectroscopy in a Quark-Diquark Approach A. Torcato, A. Arriaga, G. Eichmann, M. T. Peña Few-Body Sys. 64, 45 (2023) https://doi.org/10.1007/s00601-023-01826-9
Intensity Ratio of Kβ/K$$\alpha$$ in Selected Elements from Mg to Cu, and the Chemical Effects of Cr K$$\alpha$$1,2 Diagram Lines and Cr Kβ/K$$\alpha$$ Intensity Ratio in Cr Compounds Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, T. Shoji, K. Słabkowska, Ł. Syrocki , M. Polasik, J. P. Gomilsek, J. P. Marques, J. M. Sampaio, M. Guerra, J. Machado, J. P. Santos, A. Hamidani, A. Kahoul, P. Indelicato, and F. Parente Ito, Y.; Tochio, T.; Yamashita, M.; Fukushima, S.; Shoji, T.; Słabkowska, K.; Syrocki, Ł.; Polasik, M.; Gomilsek, J.P.; Marques, J.P.; et al. Intensity Ratio of Kβ/Kα in Selected Elements from Mg to Cu, and the Chemical Effects of Cr Kα1,2 Diagram Lines and Cr Kβ/Kα Intensity Ratio in Cr Compounds. Int. J. Mol. Sci. 2023, 24, 5570. https://doi.org/10.3390/ijms24065570 10.3390/ijms24065570
Diverse mechanisms in proton knockout reactions from the Borromean nucleus 17Ne F. Wamers, C. Lehr, J. Marganiec-Galazka, et al. (62 authors) Eur. Phys. J. A 59, 154 (2023) 10.1140/epja/s10050-023-01063-y
Suppression of Coulomb-nuclear interference in the near-barrier elastic scattering of 17Ne from 208Pb J. Díaz-Ovejas, I. Martel, D. Dell'Aquila, et al. (40 authors) Phys. Lett. B 843 (2023) 138007 10.1016/j.physletb.2023.138007
Opacities of singly and doubly ionized neodymium and uranium for kilonova emission modeling A Flörs, R F Silva, J Deprince, H Carvajal Gallego, G Leck, L J Shingles, G Martínez-Pinedo, J M Sampaio, P Amaro, J P Marques, S Goriely, P Quinet, P Palmeri, M Godefroid Monthly Notices of the Royal Astronomical Society, Volume 524, Issue 2, September 2023, Pages 3083–3101 10.1093/mnras/stad2053
The first PET glimpse of a proton FLASH beam F. Abouzahr, J.P. Cesar, P. Crespo, M.J. Gajda, Z. Hu , W. Kaye, K. Klein, A. Kuo, S. Majewski, O.R. Mawlawi, A. Morozov, A. Ojha, F. Poenisch, J.C. Polf, M. Proga, N. Sahoo, J. Seco, T. Takaoka, S. Tavernier, U. Titt, X. Wang, X.R. Zhu, K. Lang Phys. Med. Biol. 68 (2023) 125001 10.1088/1361-6560/acd29e
Double J /$$\Psi$$ production in pion-nucleon scattering at COMPASS G.D. Alexeev et al. (COMPASS Coll.) Phys. Lett B 838 (2023) 137702 10.1016/j.physletb.2023.137702
Jet substructure observables for jet quenching in Quark Gluon Plasma: a Machine Learning driven analysis Miguel Crispim Romão, José Guilherme Milhano, Marco van Leeuwen e-Print: 2304.07196 [hep-ph]
The Forward Physics Facility at the High-Luminosity LHC J. L. Feng, F. Kling, M. H. Reno, et al. (including G. Chachamis) J.Phys.G 50 (2023) 3, 030501 10.1088/1361-6471/ac865e
Medium-induced radiation with vacuum propagation in the pre-hydrodynamics phase Carlota Andres, Liliana Apolinário, Fabio Dominguez, Marcos Gonzalez Martinez, Carlos A. Salgado JHEP 03 (2023) 189 10.1007/JHEP03(2023)189
Low-pT quarkonium polarization measurements: Challenges and opportunities Pietro Faccioli, Ilse Kraetschmer, Carlos Lourenco Phys. Lett. B 840 (2023) 137871 10.1016/j.physletb.2023.137871
Dilepton decays of vector particles Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 1-37 10.1007/978-3-031-08876-6_1
Particle Polarization in High Energy Physics An Introduction and Case Studies on Vector Particle Production at the LHC Preface Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) IX-XI
Reference frames and transformations Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 39-83 10.1007/978-3-031-08876-6_2
A frame-independent study of the angular distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 85-120 10.1007/978-3-031-08876-6_3
Meaning and interpretation of the frame-independent polarization Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 121-146 10.1007/978-3-031-08876-6_4
Smearing effects in non-planar processes Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 147-172 10.1007/978-3-031-08876-6_5
Polarization in cascade decays Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 173-242 10.1007/978-3-031-08876-6_6
Two-body decay distributions beyond the dilepton case Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 243-281 10.1007/978-3-031-08876-6_7
Alternative parametrization of the dilepton decay distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 283-290
Angular distributions of O -> i>V</igamma, with i>J</i(<iO</i) = J(V>)=1 and V -> l l |pigamma|pipi| ... Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 291-298
Towards a muon collider Carlotta Accettura et al, including G. Chachamis, G. Da Molin, M.Gallinaro Eur.Phys.J.C 83 (2023) 9, 864 10.1140/epjc/s10052-023-11889-x
Low projectile density contributions in the dilute-dense CGC framework for two-particle correlations Anderson Kendi Kohara, Cyrille Marquet, Víctor Vila JHEP 10 (2023) 159 10.1007/JHEP10(2023)159
Field output correction factors of small static field for iba razor nanochamber Dalila Mateus, Carlo Greco and Luis Peralta Biomed. Phys. Eng. Express 10 015004 10.1088/2057-1976/ad0ae0
Radioactivity in a bucket Luis Peralta Eur. J. Phys. 45 (2024) 015801 10.1088/1361-6404/ad0346
Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 167652, 2023 10.1016/j.nima.2022.167652
A large-area MRPC detector for muon scattering tomography J. Saraiva et al. NIMA 1050, 168183, 2023 10.1016/j.nima.2023.168183
An RPC-PET brain scanner demonstrator: First results Paulo Fonte et al NIMA 1051, 168236, 2023 10.1016/j.nima.2023.168236
Resistive plate chambers for precise measurement of high-momentum protons in short range correlations at R3B M. Xarepe et al., NIM 1055, 168445, 2023 10.1016/j.nima.2023.168445
Sealed (zero gas flow) resistive plate chambers Alberto Blanco, Paulo Fonte, Luis Lopes, Mario Pimenta Eur. Phys. J. Plus 138, 1021 (2023). 10.1140/epjp/s13360-023-04647-1
Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector J. Saraiva, C. Alemparte, D. Belver, A. Blanco, J. Callon, J. Collazo, A. Iglesias, L. Lopes Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167744 10.1016/j.nima.2022.167744
Observation of collider muon neutrinos with the SND@LHC experiment SND@LHC Colaboration Phys. Rev. Lett. 131, 031802 10.1103/PhysRevLett.131.031802
Exploring parameter spaces with artificial intelligence and machine learning black-box optimization algorithms Fernando Abreu de Souza, Miguel Crispim Romão, Nuno Castro, Mehraveh Nikjoo, Werner Porod Phys. Rev. D 107, 035004 10.1103/PhysRevD.107.035004
Berry: A code for the differentiation of Bloch wavefunctions from DFT calculations Leander Reascos, Fábio Carneiro, André Pereira, Nuno Filipe Castro, Ricardo Mendes Ribeiro Computer Physics Communications 295 (2024) 108972 10.1016/j.cpc.2023.108972
Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa Front. Artif. Intell. 6 (2023) 1268852 10.3389/frai.2023.1268852
Intermediate levels of scientific knowledge are associated with overconfidence and negative attitudes towards science Simone Lackner, Frederico Francisco, Cristina Mendonça, André Mata and Joana Gonçalves-Sá Nat. Hum. Behav. 7 (2023) 1490-+ 10.1038/s41562-023-01677-8
The effects of weather and mobility on respiratory viruses dynamics before and during the COVID-19 pandemic in the USA and Canada Irma Varela-Lasheras, Lília Perfeito, Sara Mesquita and Joana G Sá PLOS Digital Health 10.1371/journal.pdig.0000405
The gamma/hadron discriminator LCm in realistic air shower array experiments R. Conceicao, P. J. Costa, L. Gibilisco, M. Pimenta, B. Tome Eur. Phys. J. C 83 (2023) 932 10.1140/epjc/s10052-023-12106-5

Oral Presentations

COSTA, P.M. (2023). A century of research on environmental carcinogens: From legacy to emerging pollutants. II TOXRUN International Congress. Toxicology Research Unit – CESPU, Porto (Portugal), Abril de 2023.
COSTA, P.M. (2023). Novel tools and old problems: Where do we stand after a century of research into environmental carcinogens? Ciclo de palestras do Doutoramento em Biociências. Universidade de Córdova (Espanha), Janeiro de 2023.
09/2023 - BeONE project: outcomes and impact. One Health EJP final meeting at the Ministry of Health (Paris, França)
03/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. OHEJP Dissemination Webinars: New Tools for Surveillance and Risk Assessment
08/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
08/2023 - INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
Mendes, Sofia L.; Sousa Santos, Carla; Feulner, Philine G. D.; Sousa, Vitor C. (2023) Contrasting outcomes of hybridization in Iberian chubs revealed through whole genome data. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
Blanckaert, A; Sousa, VC (2023) Interactions between mechanisms of reproductive isolation. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
Cecília Roque Conference Oral - Nature Inspired Solutions in Health Biotechnology 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
Arménio Barbosa Conference Oral - A Molecular Modeling Perspective on the development of Synthetic Affinity ligands 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
Cecília Roque Conference Oral - A scalable method to purify reflectins from inclusion bodies 2023-11-08 ISPPP 2023, 5th-8th November 2023, Viena, Austria
Margaria Dias Conference Oral - Reflectin-derived protopeptide: solvent modulation to promote different supramolecular assembly and materials. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
Iana Lychko Conference Oral - Characterization of dynamic self-assembly of reflectins 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
Gonçalo Teixeira Conference Oral - Odorant-binding proteins based sensors for Volatile Organic Compounds detection. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal Young Investigator Award
Carlos Costa Conference Oral - Portugal Affinity reagents towards SARS-CoV-2. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
Cátia Soares Conference Oral - Portugal Dynamic Self-Assembly characterization of reflectins. 2023-06-02 Biophysics Festival, 1st-2nd June 2023, Porto, Portugal
Arménio Barbosa Conference Oral - Multiscale Modeling in Biophysics: Navigating techniques for optimal application, Biophysics Festival 2023, 1st-2nd June 2023, Porto, Portugal
Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Centaurium erythraea subsp. Majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus. Mitochondrial DNA Part B, 8(1), 86–90. https://doi.org/10.1080/23802359.2022.2160670
Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Glandora prostrata subsp. Lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus. Mitochondrial DNA Part B, 8(2), 270–273. https://doi.org/10.1080/23802359.2023.2175976
Madeira C [presenter & corresponding] et al. (2023) Multilayer molecular networks in fish adaptation to labile environments. EcoSummit 2023 - Building a sustainable and desirable future - adapting to a changing land and seascape, 13th-17th june, Gold Coast, Australia
Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Combining Drugs and Polymers for an in situ Prodrug Activation’, 6th Symposium in Medicinal Chemistry (University of Minho, 15th June 2023).
Combination of Biomolecular Simulations with Experimental Studies for More Efficient Drug Discovery, 6th Symposium on Medicinal Chemistry of University of Minho: Drug Discovery in the 21st Century 2023/06/15 – (University of Minho, Portugal), Sérgio F. Sousa
Combining multi-level biomolecular simulations with experimental data for drug discovery 8th PYChemM – Portuguese Young Chemists Meeting, 2023/05/17 – (Vila Real, Portugal) (Invited Keynote), Sérgio F. Sousa
Use of QM/MM Methods in Dissecting the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Conference on Theory and Application of Computational Chemistry, 2023/09/08 (Sapporo, Japan), Sérgio F. Sousa
Development of Biomolecular Simulation Protocols for Protein Recognition by DNA/RNA Sequences, Affinity2023 - 25th Meeting of the International Society of Molecular Recognition, 2023/05/07 (Lisbon, Portugal), Sérgio F. Sousa
Use of DFT in the Study of Enzymatic Reaction Mechanisms, DFT@PT Meeting, 2023/05/25 (Coimbra, Portugal), Sérgio F. Sousa
Application of QM/MM Methods to Understand the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Manchester Multiscale Conference – CCPBioSim, 2023/04/03 – (Manchester, UK), Sérgio F. Sousa
Use of Biomolecular Simulations to Understand and Engineer Aptamer Recognition for Biomedical Applications 9th international Oxford conference on antisense and therapeutic nucleic acids, 2023/03/27 – (Oxford, UK), Sérgio F. Sousa
Application of QM/MM Methods in the Study of the Catalytic Mechanism of Enzymes for Industrial Application, Quitel2023 - Montevideo, Uruguay - November 2023, Sérgio F. Sousa
Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “An in-silico study on the pH-dependent structure of cationic peptide dendrimers and their potential as vectors for siRNA”, Protein Electrostatics 2023, Genoa, IT. 26-29 June 2023 (Oral)
Advancements in the LouMu Project – Muography for Geological Surveys, Jornadas ICT 2023, 2023-02-02, Universidade do Minho, Braga, Pedro Teixeira
Avanços no Projeto LouMu – Muografia para Levantamentos Geofísicos, 12º Simpósio de Meteorologia e Geofísica da APMG, 2023-03-20, IPMA, Lisboa, Pedro Teixeira
Studying the origin of the elements with radioactive ion beams at ISOLDE/CERN, Jornadas Doutorais do Departamento de Física 2023, 2023-03-30, Lisboa, Faculdade de Ciênica da Faculdade de Lisboa, Francisco Barba
ATLAS Upgrade, 4th Workshop LIP-IGFAE 2023 Biblioteca Nacional, 2023-04-14, Lisboa, Helena Santos
ChatGPT: desafios e oportunidades na ótica da comunicação de ciência, III Jornadas de Comunicação de Ciência da Universidade do Minho, 2023-04-29, online, Nuno Castro
Manifesto para a ciência em Portugal: actualidade e ideias para o futuro (debate), 2023-05-16, Lisbon, Braga, Coimbra, Portugal, Joana Gonçalves-Sá
O LIP e o CERN, Seminário Engenharia e Políticas Públicas FEUP, 2023-06-15, U.Porto, Porto, Mário Pimenta
A novel neutron detection technology based on timing RPCs, 5th Doctoral Congress in Engineering, 15-16 June, 2023, University of Porto Faculdade de Engenharia, Universidade do Porto, Giorgio Canezin
Anomaly Detection at ATLAS, ATLAS-PT, 2023-06-19, Coimbra, Inês Pinto
TileCal ageing and calibration, ATLAS-PT, 2023-06-19, Coimbra, Beatriz Pinheiro Pereira
R&D of the scintillator materials, ATLAS-PT meeting, 2023-06-19, Coimbra, Rudnei Machado
Monotop searches and new Physics search with AFP, ATLAS-PT Meeting, 2023-06-19, Universidade de Coimbra, Maura Teixeira
Anomaly Detection at ATLAS, ATLAS-PT meeting, 2023-06-19, Coimbra, Inês Pinto
B-tagging in HI collisions, ATLAS-PT meeting, 2023-06-19, Coimbra, João Pedro Pires
HGTD Interlock, ATLAS-PT meeting, 2023-06-19, Coimbra, Helena Santos
TileCal DCS Report, ATLAS-PT meeting, 2023-06-19, Coimbra Portugal, Filipe Martins
Repositório Pólen, Integrações, Jornadas FCCN 2023, 2023-06-27 Escola Naval, Portugal, Zacarias Benta
Computing and Data Projects on digital Twins, Jornadas FCCN 2023, 2023-06-28, Escola Naval, Portugal, Jorge Gomes
Advancing the Portuguese Scientific Community with INCD and Google Cloud, Jornadas FCCN 2023, 2023-06-29, Escola Naval, Alfeite, Jorge Gomes
INCD - Overview of the activities in 2022, Ciência 2023, 2023-07-07, Aveiro, Portugal, Jorge Gomes
INCD - Infraestrutura Nacional de Computação Distribuída, Ciência 2023, 2023-07-07, Universidade de Aveiro, Portugal, Jorge Gomes
Searching for dark matter with the ATLAS detector using unconventional signatures, MAPFis Conference, 2023-07-24, Online, Maura Teixeira
TGF and High-energy astrophysics Observatory for gamma-Rays on board the Space Rider (THOR-SR), XXXIII ENNA Encontro Nacional de Astronomia e Astrofisica, 2023-09-07, Coimbra, Portugal, Rui Curado Silva
An effective and predictive model for the long-term variations of Cosmic Rays in the Heliosphere, 109º Congresso Nazionale, Società Italiana di Fisica, 2023-09-14, University of Salerno, Italy
Round Table: The Importance and Opportunity of Advanced Computing Infrastructures for Research and Innovation, UT Austin Portugal Program Annual Conference 2023, 2023-10-24, Braga, INL, Nuno Castro
Dados, análise e políticas: um novo sistema de vigilância epidemiológica, IV Congresso Nacional dos Médicos de Saúde Pública, 2023-10-26, Viseu, Portugal, Joana Gonçalves-Sá
A Importância das Competências Digitais na Inteligência Artificial (roundtable), INCoDe.2030: Fórum das Competências Digitais, 2023-10-30, Porto, Portugal, Joana Gonçalves-Sá
Infraestrutura Nacional de Computação Distribuída Novo Centro Operacional na UTAD, Encontro RNCA 2023, 2023-11-07, Universidade de Trás os Montes e Alto Douro, Vila Real, Portugal, Jorge Gomes
Science in the Machine Era, Development in Action - Inspiring Embryonic Minds, 2023-11-10, Faculdade de Ciências, UL, Lisbon, Portugal, Joana Gonçalves-Sá
Zapping projeto POLEN da FCT-FCCN, 10.º Fórum de Gestão de Dados de Investigação, 2023-11-15, Politécnico de Setúbal, Zacarias Benta
Searching for dark matter with the ATLAS detector using unconventional signatures, MAPFis PhD Students Assessment, 2023-12-06, Universidade do Minho, Maura Teixeira
O projeto AgriSpace, Copernicus para a Floresta e Agricultura em Portugal, 2023-12-19, Direção Geral do Território, João Pina

Proceeding in international conferences

An Earlier Experiences Towards Optimizing Apache Spark Over Frontera Supercomputer.
- Bernardo, S., Ruhela, A., Cazes, J., Harrell, S.L., Gomes, J.,
- High Performance Computing. ISC High Performance 2023. Lecture Notes in Computer Science, vol 13999. Springer, Cham.
- DOI: 10.1007/978-3-031-40843-4_29
Prospects for VHE monitoring of Gamma-ray Bursts with SWGO
- G. La Mura, U. Barres de Almeida, R. Conceição, A. de Angelis, F. Longo, M. Pimenta, E. Prandini, E. Ruiz-Velasco, B. Tomé, for the SWGO Collaboration
- Proceedings of the Sixteenth Marcel Grossmann Meeting, World Scientific
- DOI: 10.1142/9789811269776_0246
Very high energy sky monitoring with the Southern Wide-field Gamma-ray Observatory
- G. La Mura, U. Barres de Almeida and F. Longo
- J. Phys.: Conf. Ser. 2429 012022, 12th Cosmic Ray International Seminar - CRIS 2022
- DOI: 10.1088/1742-6596/2429/1/012022
Very high energy sky monitoring with the Southern Widefield Gamma-ray Observatory
- Giovanni La Mura, Ulisses Barres de Almeida and Francesco Longo
- EPJ Web of Conferences 280, 01007 (2023), EPJ Web Conf. Volume 280, 2023, RICAP-22, 8th Roma International Conference on Astroparticle Physics
- DOI: 10.1051/epjconf/202328001007
Study of the 12C+16O fusion reaction in carbon burning via the Trojan Horse Method
- A. A. Oliva, A. Tumino, N. Soic, et al.
- EPJ Web of Conferences 279, 11015 (2023)
- DOI: 10.1051/epjconf/202327911015
Coulomb dissociation of 16O into 4He and 12C
- L. T. Bott, K. Goebel, M. Heil, et al.
- EPJ Web of Conferences 279, 04003 (2023)
- DOI: 10.1051/epjconf/202327904003
Monitoring of Solar Energetic Particles and Cosmic Rays with the RADEM instrument onboard the ESA JUICE mission
- Patricia Gonçalves, Wojtek Hajdas, Marco Pinto, Andre Galli, and Olivier Witasse
- EGU General Assembly 2023 Vienna, Austria, 24–28 Apr 2023, EGU23-14711
- DOI: 10.5194/egusphere-egu23-14711
Signature of Accidental Symmetry Breaking in Two-particle Correlations within the CGC
- Anderson Kendi Kohara, Cyrille Marquet, Victor Vila
- Acta Phys.Polon.Supp. 16 (2023) 5, 25
- DOI: 10.5506/APhysPolBSupp.16.5-A25
Experimental study of high-energy fission and quasi-fission dynamics with fusion-induced fission reactions at VAMOS++
- D. Fernández, M. Caamaño, D. Ramos, et al.
- EPJ Web of Conferences 284, 04009 (2023)
- DOI: 10.1051/epjconf/202328404009
Higgs Physics at a Muon Collider with detailed detector simulation
- G. Da Molin et al.
- PoS ICHEP2022 (2022) 515
- https://pos.sissa.it/414/515
Resistive plate chambers for precise measurement of high-momentum protons in short range correlations at R3B
- M. Xarepe, T. Aumann, A. Blanco, et al.
- Nucl. Instr. and Methods A 1055, 168445 (2023)
- DOI: 10.1016/j.nima.2023.168445
LOOKING FORWARD: PHOTON-INDUCED PROCESSES WITH TAGGED PROTONS AT THE CMS EXPERIMENT
- Michele Gallinaro
- Acta Phys. Pol. B-Proc. Suppl. 16 (2023) 5-A12
- DOI: 10.5506/APhysPolBSupp.16.5-A12
Comprehensive investigation of fission yields by using spallation- and (p,2p)induced fission reactions in inverse kinematics
- J.L. Rodríguez Sánchez, A. Graña-González, J. Benlliure, et al.
- EPJ WEB CONF 284 (2023) 04020
- DOI: 10.1051/epjconf/202328404020
Sibyll "star" : ad-hoc modifications for an improved description of muon data in extensive air showers
- Felix Riehn, Ralph Engel, Anatoli Fedynitch
- PoS ICRC2023 (2023) 429 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
- DOI: 10.22323/1.444.0429
Gamma/hadron discrimination at PeV energies through the azimuthal fluctuations of air shower footprint at the ground
- A. Bakalová, R. Conceição, L. Gibilisco, V. Novotný, M. Pimenta, B. Tomé, J. Vícha
- PoS ICRC2023 (2023) 964, Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
- DOI: 10.22323/1.444.0964
The muon measurements of Haverah Park and their connection to the muon puzzle
- L. Cazon, H.P. Dembinski, G. Parente, F. Riehn, A.A. Watson
- PoS ICRC2023 (2023) 431 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
- DOI: 10.22323/1.444.0431
Study of b- and c-jets identification for Higgs coupling measurements at the Muon Collider
- G. Da Molin
- Nuovo Cim. C-Colloq. Commun. Phys. 46 (2023) 92
- DOI: 10.1393/ncc/i2023-23092-y
Accessing the forward region of the energy spectrum of leading neutral pions in ultra-high energy proton-air interactions
- M.A. Martins, L. Cazon, R. Conceição and F. Riehn
- PoS ICRC2023 (2023) 448 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
- DOI: 10.22323/1.444.0448
A novel method to search for point sources of ultra-high energy neutral particles using spacetime information
- M.A. Martins, L. Cazon,, R. Conceição,, J. Alvarez-Muñiz, and E. Zas
- PoS ICRC2023 (2023) 451 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
- DOI: 10.22323/1.444.0451
The Mercedes water-Cherenkov detector: a multi-PMT shallow tank design proposal for ground-based gamma-ray observatories
- Ulisses Barres de Almeida, Pedro Assis, Pedro Brogueira, Ruben Conceição, Luis M. Domingues Mendes, Guilherme F. Franco, Lucio Gibilisco, Borja S. González, Luis F. Mendes, Mario Pimenta, Gizele L.P. Santos and Bernardo Tomé for the SWGO collaboration
- Proceedings of the 38th International Cosmic Ray Conference, PoS ICRC2023 (2023) 601
- DOI: 10.22323/1.444.0601
Muon tomography with Resistive Plate Chambers for geological characterization
- R. Sarmento et al.
- Nuclear Inst. and Methods in Physics Research, A 1060 (2024) 169031
- DOI: 10.1016/j.nima.2023.169031

Posters (internation meetings)

MOUTINHO CABRAL, I., MISSIONÁRIO, M., NUNES, M., MENDONÇA, V., FERNANDES, J., TRAVESSO, M., VINAGRE, C., MADEIRA, D., GROSSO, A.R., COSTA, P.M. & MADEIRA, C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023, Gold Coast (Austrália), Junho de 2023.
MADEIRA, C., MISSIONÁRIO, M., ALMEIDA, C., MOUTINHO CABRAL, I., NUNES, M., FERNANDES, J.F., TRAVESSO, M., ANTÓNIO, C., RODRIGUES, A.M., MENDONÇA, V., VINAGRE, C., GROSSO, A.R., COSTA, P.M., MADEIRA, D. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
GONÇALVES C, MOUTINHO CABRAL I, RODRIGO AP, MADEIRA C, ALVES DE MATOS AP, GROSSO AR & COSTA PM (2023) Uncovering the potential of Cephalopoda and Polychaeta toxins for drug discovery. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
Alpha-synuclein Structural Dynamics from Molecular Dynamics Simulations” at the BioISI Ciências Research and Innovation Week 2023;
“Wild Type and Mutated α-synucleins’ Structure from Coarse-Grained Molecular Dynamics Simulations” at the 2023 Coimbra 3D-Bioinfo-PT;
Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vitor. "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Applied Bioinformatics & Public Health Microbiology 2023
Dourado Santos J, Sobral D, Pinheiro M, Isidro J, Bogaardt C, Pinto M, Prada JM, Horton DL, Gomes JP, TELEVIR Consortium, Borges V, INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.Applied Bioinformatics & Public Health Microbiology 2023
Sofia L. Mendes, Carla Sousa Santos, Philine G. D. Feulner, Vitor C. Sousa Multiple outcomes of hybridization in Iberian chubs inferred from whole genome data, 23-27 July 2023, Ferrara, Italy
M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
Iana Lychko Conference Poster Optimized production of reflectins and characterization of their reversible self-assembly 2023-12-09 PROTEIOS Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
Arménio Barbosa Meeting Poster Modeling studies of reflectin de novo peptide assembly 2023-04-05 5th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 4-5th April, 2023, Portugal
Madeira C, Missionário M, Almeida C, Cabral IM, et al. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte, 5th-7th july, Aveiro, Portugal
Cabral IM, Missionário M, Nunes M, […], Madeira C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023 - Building a sustainanble and desirable future: adapting to a changing land and seascape. 13th-17th june, Gold Coast, Australia
- M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
2nd Annual Meeting of CIBIT: "Deciphering emotions in the human brain - a functional MRI exploration of music-induced emotions and their potential applications"; Alexandre Sayal, Inês Bernardino, Teresa Sousa, Miguel Castelo-Branco, Bruno Direito (2023)
Luís Mendes, Gas Regeneration System for RPCs, LISHEP2023, UERJ, Rio de Janeiro, Brasil 2023-03-06
Nuno Leonardo, New Era in Neutrino Physics at Colliders: construction and physics of SND@LHC experiment, LISHEP 2023, Rio de Janeiro, 2023-03-07
Ricardo Silva, Improving opacity predictions through optimization of atomic data calculations, Atomic Processes in Plasmas (APIP) 2023, Vienna, Austria, 2023-05-16
Ricardo Barrué, The ATLAS Trigger System, 11th Large Hadron Collider Physics Conference 2023, Belgrade, Serbia, 2023-05-23
Nuno Fernandes, ATLAS Trigger and Data Acquisition Upgrades for the High-Luminosity LHC, 11th Large Hadron Collider Physics Conference 2023, Belgrade, Serbia, 2023-05-23
Joana Antunes, Impact of Physical Parameters on GBM Survival Curves in Enhanced Radiotherapy with Gold Nanoparticles, 61th Annual Particle Therapy C0-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
Maria Giorgi, Proton minibem radiation therapy for cardiac radioablation: A proof of concept, 61th Annual Particle Therapy Co-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
Miguel Molina-Hernández, Radiolysis modeling of FLASH during a continuous beam irradiation, 61th Annual Particle Therapy C0-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
Joana Leitão, Proton Multi-Beam FLASH Radiotherapy: Combining FLAH and IMPT Applied to Meningioma Case, 61th Annual Particle Therapy Co-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
Ricardo Silva, An Atomic Data Optimization Method For Improved Kilonova Opacity Modeling, International Colloquium On Atomic Spectra And Oscillator Strengths For Astrophysical And Laboratory Plasmas (ASOS14), Paris, France, 2023-07-10
Joana Gonçalves-Sá, Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting, NetSci2023: International School and Conference on Network Science, Vienna, Austria, 2023-07-12
Pedro Canatário Duarte, The diffusion of information in social media – How complex is it?, NetSci2023: International School and Conference on Network Science, Vienna, Austria, 2023-07-14
Ana Luísa Carvalho, The ATLAS trigger system during Run 3, Lepton Photon Conference, Melbourne, Australia, 2023-07-17
Felix Riehn, The muon measurements of Haverah Park and their connection to the muon puzzle, 38th International Cosmic Ray Conference (ICRC2023) - The Astroparticle Physics Conference, Nagoya, Japan and Online, 2023-07-27
André Torcato, Heavy baryon spectroscopy in a quark-diquark approach, 25th European conference on few-body problems in physics (EFB25), Mainz, Germany, 2023-07-30
Miguel Martins, Accessing the forward region of the energy spectrum of leading neutral pions in ultra-high energy proton-air interactions, The Astroparticle Physics Conference, ICRC 2023, Nagoya, Japan and Online, 2023-08-01
Miguel Martins, A novel method to search for point sources of ultra-high energy neutral particles using spacetime information, The Astroparticle Physics Conference, ICRC 2023, Nagoya, Japan and Online, 2023-08-03
Maura Teixeira, ATLAS Forward Proton Detector as a Tool for New Physics Searches, poster presentation at European School of High Energy Physics,Grenaa, Denmark 2023-09-11
Patrícia Gonçalves, The Radiation Monitor onboard JUICE, Science opportunities during cruise Heliophysics in Europe, ESTEC, ESA, Noordwijk, The Netherlands, 2023-11-01
BRAVER challenges students in radiation protection training in an international training, Higher Education with Impact Conference, Hasselt, Belgium, 2023-12-13
CHERNE, an adaptative network focused on students, Higher Education with Impact Conference, Hasselt, Belgium, 2023-12-15

Posters (national meetings)

Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “In silico study of cationic peptide dendrimers as pH-dependent vectors for siRNA”, 3D-BIOINFO-PT Annual Meeting, Coimbra, Portugal, Dez. 2023. (Poster)
Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “Investigating the pH-Dependent Structure of Cationic Peptide Dendrimers and Their Potential as siRNA Vectors: An In-Silico Study”, 3rd Chem & Biochem Students Meeting, FCUL, Lisboa, Portugal, July 13, 2023. (Poster)
Ricardo Silva, Improved Opacity Predictions of r-process Elements, Jornadas Doutorais do Departamento de Física 2023 Lisboa, Faculdade de Ciênica da Faculdade de Lisboa, 2023-03-30
Tomás Correia Sousa, CALIFA calibration with cosmic muons, Doctoral Congress of Engineering 2023, Faculdade de Engenharia da Universidade do Porto, 2023-06-16

Thesis / Dissertation

PhD Thesis

Finished

Dr. Gonçalo Teixeira, “Olfaction inspired sensing using tailor-made proteins” , MIT Portugal Program of Bioengineering Systems, FCT NOVA, December 2023.
Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.
Rational development of new biocatalysts for the production of Parkinson Disease drugs Student: Juliana Rocha Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: July 25 2023
IST Miguel Orcinha Study of solar modulation effects on cosmic ray fluxes measured by the AMS experiment
ATLAS, Pheno UC Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment
UC Alexandre Fonseca Trindade Study of noble gases mixtures characteristics as a detection medium
DarkMatter UC Guilherme Pereira Data processing and Human Machine Interface for the monitoring and control system of LZ dark matter experiment
FCUL Elisabet Galiana Analysis and simulation of (p,g) and PIGE low energy reactions: An ENSARRoot developmen
IST Diogo de Bastos Search for the supersymmetric stop quark in the CMS experiment
FCUL Dalila Mateus Estudos dosimétricos para SBRT/SRT de pequenas lesões do Cérebro
IST Ana Luísa Carvalho Study of the CP properties of the Higgs coupling to top quarks with ATLAS at the LHC.

Ongoing

Jorge Filipe Marques Gadelho
- Título: Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OpenFOAM
- Universidade: Instituto Superior Técnico - Universidade de Lisboa Cabral, C. (ongoing). Assessment of impacts of marine non-indigenous species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Carvalho, F. (ongoing). Changes in Ecosystem Services with the introduction of marine invasive species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Afonso, I. (ongoing). Fouling marine non indigenous species at different biogeographical levels. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Goulding, T. (ongoing). The Portuguese clam fishery: Future impact of Hybrids and Ocean Acidification to coastal communities. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Pereira, E. (ongoing). Dinâmica da migração catádroma do muge (Liza ramada Risso, 1827) e sua importância para os ecossistemas fluviais. Doutoramento em Biologia, Universidade de Évora
Belo, A.F. (ongoing). Contribuição para o conhecimento da biologia e ecologia do sável em Portugal: impacto do restauro fluvial e da gestão participada na sua conservação. Doutoramento em Biologia, Universidade de Évora.
Silva, A.F. (ongoing). Avaliação da adequabilidade do desenho e dimensionamento de uma Área Marinha Protegida com vista à gestão de recursos pesqueiros. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Monteiro, R. (ongoing). Assessment of anthropogenic impacts on the European Eel in Portugal. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa
Marques, J.P. (ongoing). Migrações da corvina-legítima: importância do estuário do Tejo como área de viveiro e de reprodução. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
Silva, S. (ongoing). Estudo das populações de truta (Salmo trutta L.) no limite sul de distribuição: implicações para a sua gestão e conservação. Doutoramento em Biologia, Universidade de Évora.
Rato, A. (ongoing). Gestão e conservação das espécies potamódromas: dinâmica de movimentos, fidelidade espacial e migrações parciais. Doutoramento em Biologia, Universidade de Évora.
Almeida, A.R. (ongoing). FRESHseaBASS - Divergent sea bass freshwater incursions. Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa. 1. Pedro R. Figueiredo. ‘Enzymatic Synthesis of Biodegradable Amphiphilic Polymer-drugs for Cancer Treatment.’
Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex Student: André Pina Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: January15th 2024 1. Development of biocidal formulations for effective biofouling control Student: Susana Maria da Fonseca Fernandes (Supervisor Principal: Manuel Simões; Outros Supervisores: Fernanda Borges) Programa Doutoral em Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal 2019 – 2023 Defense: Feb9th 2024
Ana Sofia Carvalho, FCT (PD/BD/135550/2018) Immune profiling of advanced-stage HER2+ breast cancer by scRNA-seq.
Matthew Cox Physics - University of Liverpool
Matteo Pisano IST
Ricardo Barrué IST
Duarte Guerreiro FCUL Doutoramento em Engenharia Física
Sara Mesquita UNL- NOVA
José Patuleia Venâncio IST DEFT
Borja González IST
Maura Teixeira UMinho
Joana Antunes FCUL Doutoramento em Engenharia Biomédica e B...
Beatriz Pinheiro Pereira IST PhD in Physics
Miguel Molina-Hernández IST
Raúl Torres IST
Luis Coelho UC
João Martins da Silva IST
João Arruda Gonçalves IST Doctoral Programme in Physics
Manuel Xarepe FCUL PhD. Engineering Physics
Rudnei Machado IST
João Saraiva UC
Mariana Brás IST
Lucio Gibilisco IST
Afonso Paixão Marques UC Engineering Physics
Carina Coelho FCUL
Joana Leitão IST
Luís Afonso UP
Esteban Chalbaud UC Doutoramento em Física
André Cordeiro IST
Nuno Fernandes IST Engineering Physics
Alexandra Fernandes UMinho
Guilherme Soares IST Doutoramento em Engenharia Fisica Tecnol...
Pedro Costa IST
Cristiana Rodrigues FCUL PhD in Biomedical and Biophysics Enginee...
Fernando Souza UMinho
Johan Wulff IST
Giacomo Da Molin IST
Dario Vaccaro IST
André Torcato IST
Ricardo Silva FCUL
Wallison Campanelli FCUL
Eduardo Ferreira UniGraz
Íris Damião IST
Giovanni Marozzo IST
Francisco Barba FCUL
Sandro Saltão UC Doutoramento em Física
Nuno Olavo IST Doutoramento Física
Henrique Legoinha IST
Kai Jenkins UC
Annalisa Berti UMinho
Cristiana Francisco UC
Beymar Surco UC
António Pessanha Gomes IST Doutoramento em Engenharia Física Tecnol...
Caroline Licour UBI
Rodrigo Capucha FCUL
Rui Fernandez IST
Francisca Afonso FCUL
Pedro Conceição UBI Engenharia Aeronaútica
Geraldo Rodrigues IST Mechanical Engineer
Joel Filho UC Engenharia Física
Daniel Vareta IST Mechanical Engineer

Master Thesis

Finished

João Pedro Correia Mourão Miranda (2023) Simulação Numérica de Ventilação Instacionária em Espaços Interiores, ISEP.
RODRIGO DE JESUS EUSÉBIO "Re-implementation of a data analysis pipeline for the genetic characterization of viral pathogens in the context of laboratory surveillance of viral outbreaks" Sep, 2023 Nova Medical School
Marta Ferreira (2023) Genomics of adaptation to cadmium on a spatially heterogeneous environment. MSc Biologia Evolutiva e do Desenvolvimento. Faculdade de Ciências da Universidade de Lisboa.
- Mestrado em Bioinformática - Universidade do Minho;
  - Aluna: Catarina Gomes Ferreira;
  - Orientadores: Isabel Duarte (UAlg) e Miguel Rocha (UMinho).
  - MitoProfiles: Cancer mitochondrial profiles in high metabolic rate organs"
Jorge Fernando Pereira Sinval: Beyond the Accuracy of Clinical Reasoning: The Development of a New Instrument. Msc Faculdade de Medicina de Lisboa
Ribeiro, A.R. 2022. Estudo da dinâmica de movimentos e comportamento migratório dos ecótipos anádromo e holobiótico de truta (Salmo trutta L.) no rio Mondego., Mestrado em Ecologia e Gestão Ambiental, Faculdade de Ciências, Universidade de Lisboa.78pp HYPERLINK "http://hdl.handle.net/10451/56922"http://hdl.handle.net/10451/56922
Development of computational approaches for the identification of bioactive molecules present in databases of cyanobacterial compounds for therapeutic approaches in human diseases Student: Renato Soares (Main Supervisor: Dr. João Carneiro, CIIMAR; Other Supervisors: Diogo Pratas, Univ Aveiro) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Defense: July 24th 2023
Molecular Modelling of Natural Compounds Extracted from Plants as New Insecticide Agents Student: Maria Araújo Mestrado: Biofísica e Bionanosistemas Universidade do Minho, Portugal 2019/2022 Defense: April 23rd 2023
Understanding the Molecular Basis Behind Congenital Disorders of Glycosylation Student: Tiago André Cunha Oliveira Mestrado: Biochemistry of Health Escola Superior de Saúde, Instituto Politécnico do Porto, Portugal 2023 Defense: November22nd 2023
Uminho Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider
FCUL João Afonso Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework. http://hdl.handle.net/10451/56730
UC Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC
UC João Humberto Gomes Deep Learning in QCD Jets
UC Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0?2β decay of Xe-136
FCUL Catarina Pereira Performance of the TileCal High Voltage Upgrade System
FCUL Rui Fernandes Marques Controlo Digital e Nova Electrónica para o Banco de Testes para o Sistema de Alta Tensão dos Fotomultiplicadores do Tilecal
FCTUC António Sampaio Optimization of a device for deep-brain transcranial magnetic stimulation via simulations
FCUL Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT
IST Henrique Legoinha Probing the Quark Gluon Plasma with B0s and B+ Mesons: Cross Sections in pp and Nuclear Modification Factors in PbPb Collisions https://cds.cern.ch/record/2860807/
FCUL Tomás Almeida Design of a phantom for radiobiology studies
Uminho Pedro Chaves Probing Dark Matter with Higgs Bosons and Top Quarks
FCUL Lia Pereira The effects of radiation on amyloids and cells experimentally and modeled using the TOPAS framework http://hdl.handle.net/10451/59369
UBI Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
FCUL João Pedro Pires Deep Neural Netwoers in Experimental Data Analyses
1. FCUL Tomás Correia Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR http://hdl.handle.net/10451/59068
IST Pedro Canatário Duarte The diffusion of information in social media – How much complexity do we need?
IST Lénea Luís Deciphering jet quenching effects through a quantile ratio
UC Pedro Póvoa Combining HPC and Low-Power Systems for Data-Intensive-Acquisition Sensors in Space Missions
UC Francisco Santos Procura de fugas em redes de água
UC João Parente Development of Machine Learning Tools for the extraction of behavioral and physiological parameters of birds in their natural environment
UC Francisco Casalinho Probing the vaccum with di-Higgs production
UC Jorge Francisco Silva Transmission muon tomography using ultra-low gas consumption RPC technology
UC António Caramelo High Granularity Timing Detector’s Patch Panel Filter Testing
FCTUC Giorgio Canezin A nRPC-4D neutron Detector Concept with Timing and Tridimensional Position Readout Capability
UC António Carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans
UC José Sousa Development of a High-Energy Astrophysics Tracker for the Space Rider Orbital Maiden Flight
IST António Pessanha Gomes Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury
IST Simão Costa Probing quark hadronization with B mesons at the LHC http://cds.cern.ch/record/2883330?ln=en
IST Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
Uminho Magda Duarte Development of high-resolution, three-dimensional muographies
IST Guilherme Rita de Almeida Acceleration of track reconstruction algorithms using GPUs
IST Marco Leitão "QGP effects on Energy Correlators inside jets"
IST Milton Freitas Measurement of the number of muons in high occupancy MARTA stations
FCUL Edgar Sousa Study of dosimetry techniques applied to electron beams with high dose rate
ISEL Maria João Borges Beam tests of a scintillation array detector for high-resolution dosimetry
FCUL Ana Campos Estudo da dispersão de partículas alfa em filmes finos
FCUL Nuno Taborda Construção de um protótipo para o estudo da exalação de radão por materiais de construção
FCUL Fábio do Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro
UC Maria Miguel Interlock electronics for the high Granularity Timing Detector od the ATLAS

Ongoing

2023-present (main supervisor). David Lohmann – MSc in Computational Biology and Bioinformatics thesis: “Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios”. NOVA School of Science and Technology, Portugal
2023-present (co-supervisor). Raquel Maricato - MSc in Computational Biology and Bioinformatics thesis: “Evolution of the minimal stress proteome in marine fauna: potential for adaptation to climate change”. NOVA School of Science and Technology, Portugal.
2023-present (co-supervisor). João Lopes – MSc in Computational Biology and Bioinformatics thesis: “Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats”. NOVA School of Science and Technology, Portugal.

Patents

Datasets

Martins, C., Carvalho, L.M., Moutinho Cabral, I., Saúde, L., Dreij, K., Costa, P.M. A mechanistic study on the interaction effects between legacy and pollutants of emerging concern: A case study with B[a]P and diclofenac. Accession number GSE232729 (under publication embargo)
Gonçalves, C., Moutinho Cabral, I., Grosso, A.R, Costa, P.M. Transcriptome profiling of the posterior salivary gland of the cuttlefish Sepia officinalis. Accession number GSE251667 (under publication embargo)
Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 3,076 Campylobacter jejuni isolates. https://zenodo.org/record/7230105#.Y-ftJi0qJQI.
Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,999 Escherichia coli isolates. https://zenodo.org/record/7230102#.Y-fuTi0qJQI.
Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, Joao Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective cgMLST profiles of a diverse dataset comprising 1,874 Listeria monocytogenes isolates. https://zenodo.org/record/7230003#.Y-fvCC0qJQI.
Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,434 Salmonella enterica isolates. https://zenodo.org/record/7230091#.Y-fvrC0qJQI
Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vítor. Multiple Sequence Alignment of a diverse dataset with 1788 Mycobacterium tuberculosis isolates. https://zenodo.org/doi/10.5281/zenodo.7772651

Software Cientifico

MitoCarta, depositado no GitHub (https://github.com/MitoProfiles/MitoCarta)
Validation and benchmarking of ReporTree (a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data) https://github.com/insapathogenomics/ReporTree
Development of INSaFLU TELE-VIR platform https://github.com/INSaFLU/INSaFLU
Development of INSaFLU Snakemake https://github.com/INSaFLU/insaflu_snakemake

2022

International articles with referee

Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 10.3389/fnins.2022.862315
Magalhães, Rita P., et al. "Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach." Molecular Systems Design & Engineering 7.5 (2022): 434-446. https://doi.org/10.1039/D2ME00009A
Burke, Anthony J., Carla SS Teixeira, and Sergio F. Sousa. "Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product." Asian Journal of Organic Chemistry 11.4 (2022): e202100692. https://doi.org/10.1002/ajoc.202100692
Lapaillerie, Delphine, et al. "Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces." Antimicrobial Agents and Chemotherapy 66.8 (2022): e00083-22. https://doi.org/10.1128/aac.00083-22
Araškov, Jovana B., et al. "Zn (II) complexes with thiazolyl–hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity." CrystEngComm 24.29 (2022): 5194-5214. https://doi.org/10.1039/D2CE00443G
Keller-Costa, Tina, et al. "Evidence for cross-feeding, metabolic specialization, and niche partitioning in the octocoral holobiont." (2022). https://doi.org/10.21203/rs.3.rs-1630933/v1
Nogueira, Paulo Jorge, et al. "Multimorbidity profile of COVID-19 deaths in Portugal during 2020." Journal of clinical medicine 11.7 (2022): 1898. https://doi.org/10.3390/jcm11071898
Silva, Sandra Godinho, et al. "Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere." Marine Drugs 20.7 (2022): 423. https://doi.org/10.3390/md20070423
Fernandes, Henrique S., et al. "A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems." Molecules 27.17 (2022): 5524. https://doi.org/10.3390/molecules27175524
Vieira, Tatiana F., et al. "Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations." Antibiotics 11.2 (2022): 185. https://doi.org/10.3390/antibiotics11020185
Rocha, Juliana F., Sérgio F. Sousa, and Nuno MF Sousa A. Cerqueira. "Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids." ACS Catalysis 12.9 (2022): 4990-4999. https://doi.org/10.1021/acscatal.1c05567
Pereira, Ana Cláudia, et al. "Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells." Molecular Systems Design & Engineering (2022). https://doi.org/10.1039/D2ME00022A
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Semi-empirical and empirical calculation of Kβ/Kα intensity ratios for Low-Z Elements A. Hamidani, A. Kahoul, S. Daoudi, J.M. Sampaio, J.P. Marques, F. Parente, K. Meddouh, N. Kup Aylikci, V. Aylikci, Y. Kasri At. Nucl. Data Tables 149, 101549 (2023) 10.1016/j.adt.2022.101549
Independently Optimized Orbital Sets in GRASP – The Case of Hyperfine Structure in Li I Y. Li, P. Jönsson, M. Godefroid, G. Gaigalas, J. Bieron, J. P. Marques, P. Indelicato, and C. Chen Atoms 2023, 11, 4 10.3390/atoms11010004
Design of beam optics for RF-separated kaon and antiproton beams in the M2 beam line of the CERN North Area A. Gerbershagen et al. (14 authors) NIM A 1048 (2023) 168004 https://doi.org/10.1016/j.nima.2022.168004
An experiment for electron-hadron scattering at the LHC K.D. J. André et al Eur.Phys.J.C 82 (2022) 1, 40 10.1140/epjc/s10052-021-09967-z
A template method to measure the t(t)over-bar polarisation J. A. Aguilar-Saavedra, M. C. N. Fiolhais, P. Martin-Ramiro, J. M. Moreno, A. Onofre Eur. Phys. J. C 82 (2022) 134 10.1140/epjc/s10052-022-10063-z
Impact of jet-production data on the next-to-next-to-leading-order determination of HERAPDF2.0 parton distributions H1 Collaboration / ZEUS Collaboration (234 authors) Eur. Phys. J. C 82 (2022) 243 10.1140/epjc/s10052-022-10083-9
Jets and Jet Substructure at Future Colliders Johan Bonilla et al. (27 authors) Front. Physics 10 (2022) 897719 10.3389/fphy.2022.897719
On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
On the polarization of the non-prompt contribution to inclusive J/psi production in pp collisions Pietro Faccioli, Carlos Lourenco J. High Energy Phys. 10 (2022) 010 10.1007/JHEP10(2022)010
NNLO interpolation grids for jet production at the LHC D. Britzger, A. Gehrmann-De Ridder, T. Gehrmann, E. W. N. Glover, C. Gwenlan, A. Huss, J. Pires, K. Rabbertz, D. Savoiu, M. R. Sutton, J. Stark Eur.Phys.J.C 82 (2022) 10, 930 10.1140/epjc/s10052-022-10880-2
Improved background subtraction and a fresh look at jet sub-structure in JEWEL J. G. Milhano and K. Zapp Eur. Phys. J. C82 (2022) no.11, 1010 10.1140/epjc/s10052-022-10954-1
Multiparticle production in proton-nucleus collisions beyond eikonal accuracy P. Agostini, T. Altinoluk, N. Armesto, F. Dominguez and J. G. Milhano Eur. Phys. J. C82 (2022) no.11, 1001 10.1140/epjc/s10052-022-10962-1
Flavour-Changing Neutral Scalar Interactions of the Top Quark Nuno Castro, Kirill Skovpen Universe 2022, 8, 609 10.3390/universe8110609
Heavy quarks and jets as probes of the QGP Liliana Apolinário, Michael Winn, Yen-Jie Lee Prog.Part.Nucl.Phys. 127 (2022) 103990 10.1016/j.ppnp.2022.103990
Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Colaboration To be published in JINST (arXiv:2210.02784)
The SHiP experiment at the proposed CERN SPS Beam Dump Facility SHiP Collaboration Eur.Phys.J.C 82 (2022) 5, 486 https://doi.org/10.1140/epjc/s10052-022-10346-5
Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa arXiv:2211.03233 10.48550/arXiv.2211.03233
A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 DOI: 10.1126/sciadv.abm4234
Validation of dMEREM, the Detailed Mars Energetic Radiation Environment Model, with RAD Data from the Surface of Mars Patricia Goncalves, Luisa Arruda, Marco Pinto Front. Astron. Space Sci. 9 (2022) 833144 10.3389/fspas.2022.833144
Pioneering evaluation of GaN transistors in geostationary satellites Hugo Mostardinha, Diogo Matos, Nuno Borges Carvalho, Jorge Sampaio, Marco Pinto, Patricia Gonçalves, Tiago Sousa, Paul Kurpas, Joachim Wuerfl, Andrew Barnes, François Garat & Christian Poivey Sci Rep 12, 12886 (2022) https://doi.org/10.1038/s41598-022-17179-y
The BepiColombo Environment Radiation Monitor, BERM Marco Pinto, Beatriz Sanchez-Cano, Richard Moissl, Johannes Benkhoff, Carlota Cardoso, Patrícia Gonçalves, Pedro Assis, Rami Vainio, Philipp Oleynik, Arto Lehtolainen, Manuel Grande & Arlindo Marques Space Sci. Rev. 218 (2022) 54 10.1007/s11214-022-00922-2
Tackling the muon identification in water Cherenkov detectors problem for the future Southern Wide-field Gamma-ray Observatory by means of Machine Learning B.S. González, R. Conceição, M. Pimenta, B. Tomé, A. Guillén Neural Computing & Applications 34, pages 5715–5728 (2022) https://doi.org/10.1007/s00521-021-06730-z
P_{\gamma h}^{\alpha} A new variable for γ/h discrimination in large gamma-ray ground arrays R. Conceição, B.S. González, M. Pimenta, B. Tomé Phys.Lett.B 827 (2022) 136969 10.1016/j.physletb.2022.136969
The relation between optical and γ-ray emission in BL Lac sources G La Mura, J Becerra Gonzalez, G Chiaro, S Ciroi, J Otero-Santos Monthly Notices of the Royal Astronomical Society, Volume 515, Issue 4, October 2022, Pages 4810–4827 10.1093/mnras/stac2041
The Mercedes water Cherenkov detector P. Assis, A. Bakalová, U. Barres de Almeida, P. Brogueira, R. Conceição, A. De Angelis, L. Gibilisco, B. S. González, A. Guillén, G. La Mura, L. M. D. Mendes, L. F. Mendes, M. Pimenta, R. C. Shellard, B. Tomé, J. Vícha Eur.Phys.J.C 82 (2022) 10, 899 10.1140/epjc/s10052-022-10857-1
Gamma/hadron discrimination at high energies through the azimuthal fluctuations of the particle distributions at ground R. Conceição, L. Gibilisco, M. Pimenta, B. Tomé JCAP 10 (2022) 086 https://doi.org/10.1088/1475-7516/2022/10/086
Evaluation of the potential of a gamma-ray observatory to detect astrophysical neutrinos through inclined showers Jaime Alvarez-Muñiz, Ruben Conceição, Pedro J. Costa, Mário Pimenta, Bernardo Tomé Phys.Rev.D 106 (2022) 10, 102001 10.1103/PhysRevD.106.102001

Oral Presentations

Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Activation of Gemcitabine-Polyester Conjugates in Tumor Tissues. BEB Day 2023 - Science Challenges 2023.
Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Xenonucleic acids for advanced therapeutics. Virtual Winter School on Computational Chemistry 2022.
Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Catalytic Cycle of the Human Carboxylesterase 2. Virtual Winter School on Computational Chemistry 2022.
Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Hydrolysis of cocaine towards less toxic products: a QM/MM approach. BEB Day 2022 - The overview effect 2022.
Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Principal Component Analysis of the Human Carboxylesterase 2 Active Site Conformations. BEB Day 2022 - The overview effect 2022.
Beatriz C. Almeida, Jennifer Kaczmarek, Kristala L. Jones Prather and Alexandra T. P. Carvalho. Allosteric transcription factor: essential residues. 8th Annual CCPBioSim Conference - Frontiers in Biomolecular Simulation 2022.
COSTA, P.M. (2022). Marine Biotechnology: Applications in Sustainability and Medicine: prospects and tools for bioprospecting. VII Semana da Bioengenharia. Instituto Superior Técnico da Universidade de Lisboa, Lisboa (Portugal), March 2022 (invited speaker).
MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology. Dutch Society of Toxicology, Maastricht (Netherlands), September 2022.
RODRIGO, A.P., GONÇALVES, C., MOUTINHO CABRAL, I., MARTINS, C., D'Ambrosio, M., MADEIRA, C., COSTA P.M. (2022). Advances in the bioprospecting for novel bioreactives from marine invertebrates: Multi-omics and computational strategies. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022. (Invited speaker)
NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., FERNANDES, J.F., MISSIONÁRIO, M., TRAVESSO, M., GROSSO, A.R., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Goby fish populations in intertidal environments: gene networks and epigenetic regulators modulating energy metabolism in response to seasonal warming and local climate regimes. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022.
MISSIONÁRIO, M. (2022). Marine shallow waters as climate change hotspots - multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. UCIBIO BioSeminars. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), December 2022.
Biomolecular Simulations in the Age of Information EUGLOH Research Conference "Global Health Challenges: Advances in E-Health” 2022/11/21 – (University of Lund, Sweden) (online)
Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
BioSIM - Application of Biomolecular Simulations in the Study of Biofilms Biofilms@UP – A Investigação em Biofilmes na Universidade do Porto 2022/09/15 – (University of Porto, Portugal)
herapy for Genetic Diseases: The Computer as a Tool to Address Genetic Variability VirCo 2022 Meeting “Understanding genetics: a key to a Healthier GENEration” organized by the Portuguese Pharmaceutical Students’ Association (APEF) and by the Croatian Pharmacy and Medical Biochemistry Students Association (CPSA) and that 2022/05/21 (online)
Employing Biomolecular Simulations for a Molecular Understanding of Human Diseases 2nd Workshop “From In Silico to Animal Models for the Study of Human Diseases” 2022/04/20 - University of Aveiro (Portugal)
QM/MM Methods and Protein Ligand Docking: Fundamentals and Applications Ciclo de Seminários, M.Sc. in Computational Biology 2022/04/07 - Invited by Prof. Irina Moreira (Univ Coimbra, Portugal)
Application of QM/MM Methods for Rational Enzyme Engineering of New Biocatalysts: Fighting the Three Demons Les Houches – TSRC Protein Dynamics CECAM Meeting 2022/05/23 – (Aussois, France)
Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
2022/10/27 Bioseparation and Materials - Introduction to affinity ligands Pure Winter School 2022 University of Bayreuth (Bayreuth, Germany)

Proceeding in international conferences

Title: Distal edge determination for a multi-slat prompt-gamma camera: Irradiation with a 200-MeV proton beam
- date: 2022-02-11
- Authors: H. Simões, A. Morozov, J. Silva, J. Teodoro, P. Crespo
Title: Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting
- date: 2022-02-10
- Authors: Sara Mesquita, Lília Perfeito, João Loureiro and Joana Gonçalves-Sá
- Conference: NetSciX 2022 - International School and Conference on Network Science Porto, Portugal
Title: Sensitivity to neutrinoless double beta decay of 136Xe with a third generation TPC dark matter experiment
- date: 2022-06-01
- Authors: A. Lindote and I. Olcina
- Conference: Neutrino 2022, Seoul, Korea (virtual)
Title: Neutrino physics with the LUX-ZEPLIN Detector
- date: 2022-05-31
- Authors: Paulo Brás (on behalf of LZ Collaboration)
- Neutrino 2022 Seul,Coreia (virtual)
Title: Deciphering Jet Quenching Effects with Novel Reclustering Tool
- date: 2022-04-06
- Authors: Liliana Apolinario, Pablo Rodriguez, Korinna Zapp
- Conference: Quark Matter 2022 Krakow, Poland (remote)
Title: Timing RPC for thermal neutron detection with 3D position sensitivity
- date: 2022-09-26
- Conference: XVI Workshop on Resistive Plate Chambers and Related Detectors CERN, 26–30 Sept 2022
Title: Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector
- date: 2022-05-22
- Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
Title: Improving count rate capability of timing RPCs by increasing the detector working temperature
- date: 2022-05-22
- Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
Title: Large Field CdTe Monitor for Astrophysics and TGF Science on board the Space Rider
- date: 2022-11-07
- Authors: R. M. Curado Da Silva, J. M. Maia, J. Sousa, P. Póvoa, J. Mingacho, G. Falcão, J. Gonçalves, G. Salgado, M. Moita
- Conference: IEEE Nuclear Science Symposium Milano, Italy
Title: Dual-Polarity Ion Drift Chamber: Experimental results with Xe-SF6 mixtures
- date: 2022-05-22
- Authors:
- Conference: place:
Title: Between even and odd: probing the CP-nature of the Higgs-Top Yukawa coupling date: 2022-07-08
- conference: International Conference on High Energy Physics (ICHEP 2022) Bologna, Italy
Title: The microevolution of information on social media
- date: 2022-10-20
- Authors: Lília Perfeito and Joana Gonçalves-Sá
- Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
Title: Flu or Not: A computational approach to respiratory-disease surveillance before and after COVID-19
- date: 2022-10-20
- Authors: Eleonora Tulumello, Sara Mesquita, Lilia Perfeito, Irma Varela-Lasheras and Joana Gonçalves-Sá
- Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
- date: 2022-11-09
- Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
- Conference: EPH - 15th European Public Health Conference 2022 Berlin, Germany
Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
- date: 2022-11-09
- Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
- conference: [3C] Cells, Computers & Clinics Oeiras, Portugal
Title: Proton Multi-Beam FLASH Radiotherapy: Combining FLASH and IMPT
- date: 2022-11-30
- Authors: Joana Leitão, João Seco, Patrícia Gonçalves
- Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
Title: Monte Carlo Modeling of Inter-Track Radical Reactions for FLASH
- date: 2022-11-30
- Authors: Miguel Molina, Yujie Chi, T. Zhang, Patrícia Gonçalves and João Seco
- Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
Title: Simulation of a multi-slat prompt-gamma camera for proton beam distal edge determination during pelvic irradiation
- date: 2022-11-05
- Authors: J. Silva, H. Simões, A. Morozov, J. Teodoro, P. Crespo
- Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italymulti-slat
Title: Simulation of proton range monitoring in an anthropomorphic phantom using a multi-slat prompt-gamma camera
- date: 2022-11-05
- Authors: J. Teodoro, H. Simões, A. Morozov, J. Silva, P. Crespo
- Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italy
Title: Positron emission tomography for proton range verification in proton radiation therapy
- date: 2022-11-05
- Authors: S.P. Tavernier, R. Bugalho, F. Caramelo, J.P. Cesar, P.Crespo, J.C. Da Silva, L. Ferramacho, N. Ferreira, P. Gonçalves, D.Grosshans, B. Jesus, K.Klein, K. Lang, C. Layden, C. Leong, W. Matava,A. Mozorov, F. Poenisch, M. Proga, N. Sahoo, J. Seco, H. Simões, R.Silva, M. Silveira, J. Varela
- Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Nov. 5 - 12, Milano, Italy
Dias, Ana; Moreira, Inês Pimentel; Lychko, Iana; Nurrito, Arianna; Barbosa, A.J.M.; Lutz-Bueno, Viviane; Mezzenga, Raffaele; et al. Corresponding author: Roque, Ana Cecília Afonso. "Hierarchical Self-Assembly of the Reflectin-Derived Protopeptide". Preprint. 2023. http://dx.doi.org/10.2139/ssrn.4406145. 10.2139/ssrn.4406145
Studying mass generation for gluons Gernot Eichmann, Jan M. Pawlowski (selected for Editor's choice) SciPost Phys.Proc. 6 (2022) 018 https://doi.org/10.48550/arXiv.2112.08058

Posters (international meetings)

MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022). Bioprospecting marine environments for unravelling novel drugs: Transcriptomics and interactome-directed analyses of two toxin-secreting Polychaeta. 1st Egas Moniz One Health Symposium.
NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., MISSIONÁRIO, M., FERNANDES, J.F., TRAVESSO, M., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Transcriptome profiling of the common goby Pomatoschistus microps exposed to seasonal warming reveals gene downregulation as an energy-saving mechanism to cope with thermal stress. 1st Egas Moniz One Health Symposium.
MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology.
GONÇALVES, C., COSTA, P.M. (2022). Unravelling cephalopod venom glands through histological and transcriptomic approaches. Encontro Ciência’22.
Barbosa, A.J.M.; Arianna Nurrito; Ana Margarida Dias; Soares, Cátia; Lychko, Iana; Roque, ACA. "Modeling studies of reflectin de novo peptide assembly". Paper presented in 15th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 2023.
Carlos Costa; Barbosa, A.J.M.; Ana Margarida Dias; Roque, ACA. "Affinity reagents towards the SARS-CoV-2 spike protein". Paper presented in BPP2022 Biopartitioning & Purification Conference, 2022.

Posters (national meetings)

GONÇALVES, C., GROSSO, A.R., COSTA, P.M. (2022). Advances on the venom glands of Cephalopoda: Targets for the prospecting of novel bioactives. UCIBIO Scientific Advisory Board Meeting.
Title: Detecting land-surface changes from space: Porting the Aqua Monitor application from Google Earth Engine
- date: 2022-03-22
- Authors: B. Backeberg, Z. Benta, M. David, G. Donchyts, J. Gomes, T.Gonçalves, J. Langemeijer, J. Pina, M. Viana
- Conference: First Copernicus National Conference Évora, Portugal

Thesis / Dissertation

PhD Thesis

Finished

On the measurement and interpretation of the fluxes of galactic cosmic-ray nuclei Eduardo Bueno (https://doi.org/10.33612/diss.253636377)
Guilherme Guedes A global approach to physics beyond the Standard Model (https://hdl.handle.net/10481/76867)
Ana Sofia Inácio Measurement of the 130 Te Two-Neutrino Double Beta Decay Half-life with the SNO+ Experiment
Maria Ramos The interplay between collider and astrophysical probes of non-minimal composite Higgs models (https://digibug.ugr.es/bitstream/handle/10481/72877/95029%281%29.pdf?sequence=4)
Correia, M.J. 2022. Tools for the management and conservation of the European eel (Anguilla anguilla): An application to Santo André lagoon. Faculdade de Ciências, Universidade de Lisboa, 203 pp. Submitted in May 2022.

Ongoing

Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment
Miguel Orcinha Estudo da modulação Solar no fluxo de raios cósmicos com dados da experiência AMS
The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho (UL/FCUL)
Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás (UL/IST)
Developing Multi-Beam FLASH with Proton Beams Joana Leitão (UL/IST)
Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira (UL/IST)
Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado (UL/IST)
Raios Cósmicos: desenvolvimento de módulos de divulgação através design participativo Luís Afonso
Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco (UL/IST)
Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues (UL/FCUL)
Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes (UL/IST)
Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares (UL/IST)
Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves (UL/IST)
Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes (U.Minho)
Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe (UL/FCUL)
Jetography in Heavy Ion Collisions André Cordeiro (UL/IST)
AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza (U.Minho)
Study of lepton universality in top quarks pairs events Giacomo Da Molin (UL/IST)
Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa (UL/IST)
The Partonic Structure of Hadrons Eduardo Ferreira (UL/IST)
Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro (UL/IST)
Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli (UL/FCUL)
Differential tracking on disinformation websites and its impact on search engine results Íris Damião (UL/IST)
Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud (U.Coimbra, IDPASC PT-CERN Call 2022/1)
Beatriz C. Almeida, Ricardo S.V. Pires, Kristala L.J. Prather, and Alexandra T.P. Carvalho. The role of zing in transcription factor allosteric regulation.
Ricardo D. González, Warispreet Singh, Lino Ferreira, and Alexandra T.P. Carvalho. Enzymatic synthesis of RNA-peptide conjugates as potential therapeutics for COVID-19.
Inês Carvalho Leonardo (2020.08210.BD)
2021.07128.BD - Fábio Martins - Rational Development of Nanomedicines for Cardiovascular Diseases.
2020.09087.BD - Rita Magalhães - In Silico Optimization of Biocatalysts for Plastic Biodegradation.
SFRH/BD/147276/2019 - Susana Maria da Fonseca Fernandes - Development of biocidal formulations for effective biofouling control.
SFRH/BD/136594/2018 - André Figueiredo Pina - Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.
SFRH/BD/137844/2018 - Claudia Tatiana Freitas Vieira - New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.
SFRH/BD/136746/2018 - Juliana Ferreira Rocha - Rational development of new biocatalysts for the production of Parkinson Disease Drugs.
Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.

Master Thesis

Finished

João Antunes Particle reconstruction in large liquid scintillator detectors using charge and time signal modelization - the SNO+ neutrino physics experiment (UL/IST)
Daniel Neacsu Dark matter searches at the LHC in models with extended scalar sectors
Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
Fátima Alcaso Design and optimisation of a xenon TPC with SiPM readout for neutrinoless double beta decay studies
Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
António Oliveira Unsupervised machine learning techniques in high energy physics
Beatriz Artur Impact of Quark-Gluon Plasma in Extensive Air Showers (https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/1972678479055537) )
Rita Silva Optimisation studies for the pion-induced Drell-Yan measurement at the AMBER experiment (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502847)
Henrique Neves From the Concept to Development of Astrophysics Payloads for Gamma Radiation Studies (U.Coimbra)
Carlota Cardoso Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury (UL/IST )
Francisco Barba Characterization of thin silicon strip detectors for nuclear experiments (UL/FCUL http://hdl.handle.net/10451/53658)
André Torcato Heavy-baryon spectroscopy in a quark-diquark 1. approach (UL/FCUL http://hdl.handle.net/10451/51871)
David Almeida PandeMedia: an annotated corpus of digital media for issue salience (UL/FCUL http://hdl.handle.net/10451/55576)
Matilde Santos Caracterização e teste funcional de um micro dosímetro de fibras ópticas cintilantes (UL/FCUL http://hdl.handle.net/10451/53766)
Nísia Fernandes Estudo da radiossensibilização de células tumorais do pâncreas com nanopartículas (http://hdl.handle.net/10451/51982)
José Rodrigues Embedded systems for heating and machine learning in microcontrollers (U.Coimbra)
João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/left21/dissertacao/565303595502771)
Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502772)
NUNES, M. (2022). Gene networks modulating heat acclimatization in common gobies: influence of latitude and season in fish metabolism and health. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Carolina Madeira and Pedro M. Costa.
MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Pedro M. Costa and Ana Rita Grosso.
Brandão, P.R. 2022. Portuguese estuarine systems and their essential ecological role for some fish species: trends and predictions in face of global changes. Mestrado em Ecologia Marinha, Universidade de Lisboa, Faculdade de Ciências. 61 pp.
Santos, Gil, 2022. Activity patterns and tridimensional space use of the European catfish (Silurus glanis) on Belver reservoir. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 57 pp. http://hdl.handle.net/10451/51885
Almeida, J. 2022. Trace Metals in the Sado Estuary and their implications on the Environmental Quality. Mestrado em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa, 103 pp. Submitted in July 2022.

Ongoing

Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
Carolina Felgueiras Simulations and benchmark of a fast neutron detector for nuclear astrophysics (UL/FCUL)
Magda Duarte Development of high-resolution, three-dimensional muographies (U.Minho)
Joana Vences Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations
Simão Costa Quark hadronization with B mesons at the LHC (UL/IST)
André Neves Astrofísica Multi-Mensageira com o Telescópio AMEGO da NASA (U.Coimbra)
Francisca Santos Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission (UL/IST)
Francisco Barreiro Geometrical aspects of jet quenching in small systems
Manuel Mariano Sensitivity of jet sub-structure observables to jet quenching in collisions of light nuclei (UL/IST)
Tomás Almeida Design of a phantom for radiobiology studies (UL/FCUL)
Igor Gago Life prospection on Mars - Studing the Martian Subsurface Radiation Environment (UL/IST)
João Pires Deep Neural Netwoers in Experimental Data Analyses (UL/FCUL)
Milton Freitas Measurement of the number of muons in high occupancy MARTA stations (UL/IST)
Lia Pereira Modelling protein amyloid structures and observing the effects of radiation using the GEANT4-DNA toolkit (UL/FCUL)
João Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework (UL/FCUL)
Tomás Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR
Rita Pestana Development of a standard methodology for online dose calculation in air (UL/FCUL)
Henrique Legoinha Probing the properties of the plasma of quarks and gluons with heavy flavour (UL/IST)
Joana Reis Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider (UL/FCUL)
Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT (UL/FCUL)
Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC (U.Coimbra)
Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0?2β decay of Xe-136 (U.Coimbra)
Gulherme Calé Jet jet correlations in QCD (UL/FCUL)
Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider (U.Minho)
José Cordeiro Development of an FPGA-accelerated clustering for the ATLAS trigger system (UL/IST)
Catarina Pereira Performance of the TileCal High Voltage Upgrade System (UL/FCUL)
Pedro Lagarelhos Prospects for the HL-LHC of the measurement of the top quark couplings in the ttbar semileptonic channel (UL/IST)
Ana Campos Estudo da dispersão de partículas alfa em filmes finos (UL/FCUL)
Guilherme Crispim Pre-equilibrium of the Quark-Gluon Plasma (UL/IST)
Miguel Lopes Integration of the HiRezBrainPET with a clinical PET/CT system - Image performance evaluation of a prototype for next-generation brain tomography (UL/IST)
Maria Borges Beam tests of a scintillation array detector for high-resolution dosimetry (UL/IST)
Fábio Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro (UL/FCUL)
Marco Leitão Disentangling QGP response using energy flow correlators (UL/IST)
António carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans (U.Coimbra)
Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST)
Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST)
Ana Filipa Fernandes (MSc in Biotechnology / FCT-NOVA)

Patents

EP21306547 / BNT231376EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, S. Routier - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (Indole derivaties) 04 November 2021
EP21306521 / BNT231394EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, M. Teulade-Fichou, R. Lartia, G. Bordeau - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (triphenylamine derivatives) 29 October 2021
Alexandra T.P. Carvalho, Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek J. Quinn, Thomas S. Moody, Andreia F. Sousa, and Armando J.D. Silvestre. Novel Variants of Hyperthermophilic Carboxylesterase for Polymer Synthesis (PCT/IB2022/051111) 2022.

Datasets

MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Glycera alba. Direct submission to GenBank – Accession OL606744
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Serine protease inhibitor Kazal-type from Glycera alba. Direct submission to GenBank – Accession OL606745
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich secretory protein from Hediste diversicolor. Direct submission to GenBank – Accession OL606746
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Thyrostimulin beta-5 subunit from Hediste diversicolor. Direct submission to GenBank – Accession OL606747
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Glycera alba. Direct submission to GEO – Accession GPL31947
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Hediste diversicolor. Direct submission to GEO – Accession GPL31948
GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Sepia officinalis. Direct submission to GenBank - Accession number: OP198203 (under publication embargo)
GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. SE-cephalotoxin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198204 (under publication embargo)
GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Venom Insulin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198205 (under publication embargo)
GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209720 (under publication embargo)
GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein (latisemin-like) from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209721 (under publication embargo)
GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Chitinase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209722 (under publication embargo)
GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Hyaluronidase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209723 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Cysteine-rich venom protein from Eulalia sp. Direct submission to GenBank – Accession OP254189 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12A from Eulalia sp. Direct submission to GenBank – Accession OP254190 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12B from Eulalia sp. Direct submission to GenBank – Accession OP254191 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M13 from Eulalia sp. Direct submission to GenBank – Accession OP254192 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Serine protease from Eulalia sp. Direct submission to GenBank – Accession OP254193 (under publication embargo)
RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Hyaluronidase from Eulalia sp. Direct submission to GenBank – Accession OP254194 (under publication embargo)

2021

Journal Paper with direct contribution

de Almeida, Duarte Sampaio Belchior. Urban Tourism Crowding Dynamics: Carrying Capacity and Digital Twinning. Diss. ISCTE-Instituto Universitario de Lisboa (Portugal), 2021. https://www.proquest.com/openview/e302b10227ebcf57af55fb137348500c/1?pq-origsite=gscholar&cbl=2026366&diss=y
Almeida, Beatriz C., et al. "Transcription factor allosteric regulation through substrate coordination to zinc." NAR genomics and bioinformatics 3.2 (2021): lqab033. https://doi.org/10.1093/nargab/lqab033
Silva, João Manuel, et al. "Burden of Liver Cirrhosis in Portugal between 2010 and 2017." GE-Portuguese Journal of Gastroenterology 28.3 (2021): 153-161. https://doi.org/10.1159/000510729
Cabrita, Alexandra, et al. "Multiple pathways to homothallism in closely related yeast lineages in the Basidiomycota." Mbio 12.1 (2021): e03130-20. https://doi.org/10.1128/mBio.03130-20
Fortunato, A. B., et al. "Sediment dynamics and morphological evolution in the Tagus Estuary inlet." Marine Geology 440 (2021): 106590. https://doi.org/10.1016/j.margeo.2021.106590
Figueiredo, Pedro R., Ricardo D. González, and Alexandra TP Carvalho. "Human Carboxylesterase 2 in Cocaine Metabolism." Molecular Catalysis 515 (2021): 111938. https://doi.org/10.1016/j.mcat.2021.111938
Figueiredo, Pedro R., et al. "Introduction of a Glycine Linker Connecting the Heavy and Light Chains in Synthetic Cardosin B-Derived Rennet Changes the Specificity of Subpocket S3′." The Journal of Physical Chemistry B 125.17 (2021): 4368-4374. https://doi.org/10.1021/acs.jpcb.1c01826
Pinto, R., Sobral, D., Grosso, A.R. (2021). Comprehensive Detection of Pseudogenes Transcribed by Readthrough. In: Poliseno, L. (eds) Pseudogenes. Methods in Molecular Biology, vol 2324. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1503-4_6
Crispim Romão, M., Castro, N.F., Milhano, J.G. et al. Use of a generalized energy Mover’s distance in the search for rare phenomena at colliders. Eur. Phys. J. C 81, 192 (2021). https://doi.org/10.1140/epjc/s10052-021-08891-6
Another look at the three-gluon vertex in the minimal Landau gauge, Guilherme T.R. Catumba (Coimbra U. and Valencia U., IFIC), Orlando Oliveira (Coimbra U.), Paulo J. Silva (Coimbra U.) https://doi.org/10.22323/1.396.0467
PTPARL-D: an annotated corpus of forty-four years of Portuguese parliamentary debates Paulo Almeida, Manuel Marques-Pita, and Joana Gonçalves-Sá Corpora 2021 16:3, 337-348 https://www.euppublishing.com/doi/full/10.3366/cor.2021.0226
Borges, Sousa et al, 2021 (Eurosurveillance); https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2021.26.10.2100130
Borges, Isidro et al, 2021 (Viruses); https://www.mdpi.com/1999-4915/13/4/604
Borges, Isidro, Trovão et al, 2021 (pre-print in medRxiv); https://www.medrxiv.org/content/10.1101/2021.02.22.21252216v1
Borges et al, 2021 (pre-print in Virological.org); https://virological.org/t/long-term-evolution-of-sars-cov-2-in-an-immunocompromised-patient-with-non-hodgkin-lymphoma/621
Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
S. Aune, J. Bortfeldt, F. Brunbauer, C. David, D. Desforge, G. Fanourakis, M. Gallinaro, F. García, I. Giomataris, T. Gustavsson, F.J. Iguaz, M. Kebbiri, K. Kordas, C. Lampoudis, P. Legou, M. Lisowska, J. Liu, M. Lupberger, O. Maillard, I. Maniatis, I. Manthos, H. Müller, E. Oliveri, T. Papaevangelou, K. Paraschou, M. Pomorski, B. Qi, F. Resnati, L. Ropelewski, D. Sampsonidis, L. Scharenberg, T. Schneider, L. Sohl, M. van Stenis, A. Tsiamis, Y. Tsipolitis, S.E. Tzamarias, A. Utrobicic, R. Veenhof, X. Wang, S. White, Z. Zhang, Y. Zhou, Timing performance of a multi-pad PICOSEC-Micromegas detector prototype, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment,Volume 993, 2021, https://doi.org/10.1016/j.nima.2021.165076
Rodrigues M, Martins R, Rogeiro J, Fortunato AB, Oliveira A, Cravo A, Jacob J, Rosa A, Azevedo A, Freire P. 2021 (in press). A web-based observatory for biogeochemical assessment in coastal regions, Journal of Environmental Informatics.
Rodrigues, M., A. Rosa, A. Cravo, Jacob, J., Fortunato, A.B. 2021 (in press). Effects of Climate Change and anthropogenic pressures in the water quality of a coastal lagoon (RIa Formosa, Portugal), Science of the Total Environment.
Rato, A.S., Alexandre, C.M., Almeida, P.R., Costa, J.L., Quintella, B.R. 2021. Effects of hydropeaking on the behaviour, fine-scale movements and habitat selection of an Iberian cyprinid fish. River Research and Applications
Sroczyńska, K., A. Conde, P. Chainho & H. Adão (2021). How nematode morphometric attributes integrate with taxonomy-based measures along an estuarine gradient. Ecological Indicators 124: 107384. https://doi.org/10.1016/j.ecolind.2021.107384
Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
MODELING THE IMPACTS OF HARBOR DREDGING AND DISPOSAL ON COASTAL WATER-LEVELS AND RUN-UP WITH XBEACH, Coastal Dynamics Conference, 28 June-2 July 2021.
Pereira, C., Maranha, J. R. e Cardoso R. (2021). A general mathematical framework for modelling soil-water retention behaviour. 3rd Pan-American Conference on Unsaturated Soils, Rio de Janeiro, Brazil (aceite para publicação).
CRAVO A., ROSA A., RODRIGUES M. (2020). Effects of climate change and anthropogenic pressures in the water quality of the Ria Formosa (Portugal). XX Seminário Ibérico de Química Marina - SIQUIMAR 2020, 1 pp.
Mendes, Lourenço S.; Lara, Javier L.; Viseu, Maria T. 2021. "Is the Volume-of-Fluid Method Coupled with a Sub-Grid Bubble Equation Efficient for Simulating Local and Continuum Aeration?" Water 13, no. 11: 1535.
Balduíno César Mateus,Mateus Mendes,José Torres Farinha nd António Marques Cardoso "Anticipating Future Behavior of an Industrial Press Using LSTM Networks" Appl. Sci. 2021, 11(13), 6101; https://doi.org/10.3390/app11136101
Paolillo, A., Sinval, J., Silva, S. A., & Scuderi, V. E. (2021). The relationship between inclusion climate and voice behaviors beyond social exchange obligation: The role of psychological needs satisfaction. Sustainability, 13(18), 1-19. https://doi.org/10.3390/su131810252
Balduino Mateus, Mateus Mendes, José Torres Farinha, António Marques Cardoso, Data Analysis for Predictive Maintenance Using Time Series and Deep Learning Models – A Case Study in a Pulp Paper Industry, in Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
João Rodrigues, José Torres Farinha, António Marques Cardoso1 and Mateus Mendes, Prediction of Sensor Values in Paper Pulp Industry Using Neural Networks, Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
Pais, P., Oliveira, J., Almeida, V., Yilmaz, M., Monteiro, P.T., Teixeira, M.C. “Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host survival and probiotic activity based on promoter sequence variability”. Genomics, 113(2): 530-539, 2021.
Mendes S, et al. (2021) Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. HEREDITY https://doi.org/10.1038/s41437-021-00466-1.
Clemente F, et al. (2021) The genomic history of the Aegean palatial civilizations CELL 184: P2565-2586.e21 https://doi.org/10.1016/j.cell.2021.03.039
Palma JHN, 2017, CliPick – Climate change web picker. A tool bridging daily climate needs in process based modelling in forestry and agriculture, Forest Systems [S.l.], v. 26, n. 1, p. eRC01, may 2017. ISSN 2171-9845. https://doi.org/10.5424/fs/2017261-10251
SANTOS, M.L., D’AMBROSIO, M., RODRIGO, A.P., PAROLA, A.J. & COSTA, P.M. (2021). A transcriptomic approach to the metabolism of tetrapyrrolic photosensitizers in a marine annelid. Molecules 26, 3924. (doi: 10.3390/molecules26133924).
RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
Assessing the effects of PMM2 variants on protein stability Quelhas, D., Carneiro, J., Lopes-Marques, M., Jaeken, J., Martins, E., Rocha, J.F., Teixeira Carla, S.S., Ferreira, C.R., Sousa, S.F., Azevedo, L. (2021) Molecular Genetics and Metabolism, 134 (4), pp. 344-352. DOI: 10.1016/j.ymgme.2021.11.002
In silico identification of possible inhibitors for protein kinase B (PknB) of mycobacterium tuberculosis Vieira, T.F., Martins, F.G., Moreira, J.P., Barbosa, T., Sousa, S.F. (2021) Molecules, 26 (20), art. no. 6162, .
Structure and thermodynamics of empty clathrate hydrates below the freezing point of water† Fernando J. A. L. Cruz *a and José P. B. Motaa Phys. Chem. Chem. Phys., 2021,23, 16033-16043 https://doi.org/10.1039/D1CP00893E
The milk-derived lactoferrin inhibits V-ATPase activity by targeting its V1 domain Santos-Pereira, C., Rocha, J.F., Fernandes, H.S., Rodrigues, L.R., Côrte-Real, M., Sousa, S.F. (2021) International Journal of Biological Macromolecules, 186, pp. 54-70. DOI: 10.1016/j.ijbiomac.2021.06.200
Compensatory epistasis explored by molecular dynamics simulations Serrano, C., Teixeira, C.S.S., Cooper, D.N., Carneiro, J., Lopes-Marques, M., Stenson, P.D., Amorim, A., Prata, M.J., Sousa, S.F., Azevedo, L. (2021) Human Genetics, 140 (9), pp. 1329-1342. DOI: 10.1007/s00439-021-02307-x
The complete catalytic mechanism of xanthine oxidase: A computational study Ribeiro, P.M.G., Fernandes, H.S., Maia, L.B., Sousa, S.F., Moura, J.J.G., Cerqueira, N.M.F.S.A. (2021) Inorganic Chemistry Frontiers, 8 (2), pp. 405-416. DOI: 10.1039/d0qi01029d
The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina, A.F., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) ChemBioChem, DOI: 10.1002/cbic.202100555
New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes, H.S., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) Molecular Diversity DOI: 10.1007/s11030-021-10259-7
Identification of new potential inhibitors of quorum sensing through a specialized multi-level computational approach Martins, F.G., Melo, A., Sousa, S.F. (2021) Molecules, 26 (9), art. no. 2600 DOI: 10.3390/molecules26092600
Morgado P., L. Cavique (2021), Seleção de atributos usando LAID e sua implementação em sistemas de computação de alto desempenho, Revista de Ciências da Computação n.16, pp. 93-112.
Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
Light Higgs searches in t(t)over-bar phi production at the LHC Duarte Azevedo, Rodrigo Capucha, Emanuel Gouveia, Antonio Onofre, Rui Santos J. High Energy Phys. 4 (2021) 77 Jrn-Dir 2021-04-09 10.1007/JHEP04(2021)077
Measurement of the associated production of a Higgs boson decaying into b-quarks with a vector boson at high transverse momentum in pp collisions at \sqrt(s)=13TeV with the ATLAS detector ATLAS Collaboration (2927 authors) Phys. Lett. B 816 (2021) 136204 Jrn-Dir 2021-04-27 10.1016/j.physletb.2021.136204
A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
Configuration and performance of the ATLAS b-jet triggers in Run 2 ATLAS Collaboration Eur. Phys. J. C 81 (2021) 1087 Jrn-Dir 2021-12-01 10.1140/epjc/s10052-021-09775-5
Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
Measurement of the Fluctuations in the Number of Muons in Extensive Air Showers with the Pierre Auger Observatory Pierre Auger Collaboration (360 authors) Phys. Rev. Lett. 126 (2021) 152002 Jrn-Dir 2021-04-16 10.1103/PhysRevLett.126.152002
Timing performance of a multi-pad PICOSEC-Micromegas detector prototype M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165076 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165076
Modeling the timing characteristics of the PICOSEC Micromegas detector J. Bortfeldt et al. (41 authors) Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165049 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165049
Measurement of the CP-violating phase phi(s) in the B-s(0) -> J/psi phi(1020) -> mu(+)mu-K+K- channel in proton-proton collisions at root s=13 TeV CMS Collaboration (2307 authors) Phys. Lett. B 816 (2021) 136188 Jrn-Dir 2021-05-10 10.1016/j.physletb.2021.136188
Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. arXiv:2106.01393 Jrn-Dir 2021-06-02
Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector CMS MTD Collaboration (199 authors) J. Instrum. 16 (2021) P07023 Jrn-Dir 2021-07-01 10.1088/1748-0221/16/07/P07023
Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector D. Bastos, M. Gallinaro, T. Niknejad, J.C. Silva, J. Varela, et al. JINST 16 (2021) P07023 Jrn-Dir 2021-07-15
Observation of B0s mesons and measurement of the B0s/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration arXiv:2109.01908 Jrn-Dir 2021-09-04
Advances in Multi-Variate Analysis Methods for New Physics Searches at the Large Hadron Collider M. Gallinaro, G. Strong, J. Varela, et al. Rev.Phys. 7 (2021) 100063 Jrn-Dir 2021-11-06
Improving sensitivity to low-mass dark matter in LUX using a novel electrode background mitigation technique D. S. Akerib et al. Phys. Rev. D 104, 012011 Jrn-Dir 2021-07-19 https://doi.org/10.1103/PhysRevD.104.012011
Projected sensitivity of the LUX-ZEPLIN experiment to the two neutrino and neutrinoless double beta decays in Xe-134 D. S. Akerib et al. Phys. Rev. C 104 (2021) 065501 Jrn-Dir 2021-12-10 https://doi.org/10.1103/PhysRevC.104.065501
Simulation of 125 I Auger emission spectrum with new atomic parameters from MCDHF calculations J.M. Sampaio, J. Ekman, B.P.E. Tee, R. du Rietz, B.Q. Lee, M.S. Pires, P. Jönsson, T. Kibédi , M. Vos , A.E. Stuchbery, and J.P. Marques J. Quant. Spectr. Rad. Tranf. 227, 107964 (2022) Jrn-Dir 2021-10-12 10.1016/j.jqsrt.2021.107964
Optical readout studies of the Thick-COBRA gaseous detector F. Garcia, F.M. Brunbauer, M. Lisowskac, H. Müller, E. Oliveri, D. Pfeiffer, L. Ropelewski, J. Samarati, F. Sauli, L. Scharenber, A.L.M. Silva, M. van Stenis, R. Veenhof and J.F.C.A. Veloso JINST 16 (2021) T01001 Jrn-Dir 2021-01-07 10.1088/1748-0221/16/01/T01001
Operation of a novel large area, high gain, single stage gaseous electron multiplier F.D. Amaro, R. Roque, N.V. Duarte, A. Cortez, and J.A. Mir Journal of Instrumentation 16 (2021) P01033 Jrn-Dir 2021-01-27 10.1088/1748-0221/16/01/P01033
Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS A. Oliveira, A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, P. Lopes Anabela Oliveira, André B. Fortunato, Marta Rodrigues, Alberto Azevedo, João Rogeiro, Samuel Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, Pedro Lopes, Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, Volume 143, 2021 Jrn-Dir 2021-06-13 10.1016/j.envsoft.2021.105132
New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories R. Conceição, L. Peres, M. Pimenta, B. Tomé Eur. Phys. J. C 81, 80 (2021) Jrn-Dir 2021-01-25 10.1140/epjc/s10052-021-08883-6
Muon identification in a compact single-layered water Cherenkov detector and gamma/hadron discrimination using Machine Learning techniques R. Conceição, B. S. González, A. Guillén, M. Pimenta and B. Tomé Eur. Phys. J. C 81, 542 (2021) Jrn-Dir 2021-05-13 10.1140/epjc/s10052-021-09312-4
The SNO+ Experiment M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P08059 (2021) Jrn-Dir 2021-08-25 10.1088/1748-0221/16/08/P08059
Optical calibration of the SNO+ detector in the water phase with deployed sources M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P10021 Jrn-Dir 2021-10-19 10.1088/1748-0221/16/10/P10021
Quark Mass Function from an OGE-type Interaction in Minkowski Space E. P. Biernat, F. Gross, M. T. Peña, A. Stadler, S. Leitão Acta Phys. Polon. Supp. 14 (2021) 9 Jrn-Dir 2021-01-01 10.5506/APhysPolBSupp.14.9
Fundamental Parameters Related to Selenium Kα and Kβ Emission X-Ray Spectra Mauro Guerra, Jorge M. Sampaio, Gonçalo R. Vília, César A. Godinho, Daniel Pinheiro, Pedro Amaro, José P. Marques, Jorge Machado, Paul Indelicato, Fernando Parente, José Paulo Santos Atoms 9,8 (2021) Jrn-Dir 2021-01-22 10.3390/atoms 9010008
Peeling graphite layer by layer reveals the charge exchange dynamics of ions inside a solid Anna Niggas, Sascha Creutzburg, Janine Schwestka, Benjamin Wöckinger, Pedro L. Grande, Bernhard C. Bayer, José P. Marques, Friedrich Aumayr, Robert Bennett, Richard A. Wilhelm Communications Physics 4, 1801 (2021). Jrn-Dir 2021-08-12 10.1038/s42005-021-00686-1
NeuLAND: The high-resolution neutron time-of-flight spectrometer for R3B at FAIR K. Boretzky, I. Gasparic, M. Heil, et al. Nucl. Instr. and Methods A 1014, 165071 (2021) Jrn-Dir 2021-10-21 10.1016/j.nima.2021.165701
The large COMPASS polarized solid ammonia target for Drell–Yan measurements with a pion beam V. Andrieux, C. Pires, C. Quintans et al NIM A 1025 (2022) 166069 Jrn-Dir 2021-12-10 https://doi.org/10.1016/j.nima.2021.166069
Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
Running in the ALPs M. Chala, G. Guedes, M. Ramos and J. Santiago Eur. Phys. J. C (2021) 81: 181 Jrn-Dir 2021-02-23 10.1140/epjc/s10052-021-08968-2
Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
New leptons with exotic decays: collider limits and dark matter complementarity Guilherme Guedes, José Santiago arXiv:2107.03429 Jrn-Dir 2021-07-09
Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 Jrn-Dir 2022-01-14 DOI: 10.1126/sciadv.abm4234
Fortunato, A.B., P. Freire, B. Mengual, X. Bertin, C. Pinto, K. Martins, T. Guérin, A. Azevedo 2021.Sediment dynamics and morphological evolution in the Tagus Estuary inlet, Marine Geology, 440: 106590. DOI: 10.1016/j.margeo.2021.106590
Oliveira, A., A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardes, L. Lavaud, X. Bertin, A. Nahon, G. Jesus, M. Rocha, P. Lopes 2021. Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, 143: 105132. DOI: 10.1016/j.envsoft.2021.105132
Rocha, M; Oliveira, A.; Freire, P.; Fortunato, A.B.; Nahon, A.; Barros, J.L.; Azevedo, A.; Oliveira, F.S.B.F.; Rogeiro, J.; Jesus, G.; Martins, R.J.; Santos, P.P.; Tavares, A.O.; Oliveira, J. 2021. Multi-Hazard WebGIS Platform for Coastal Regions, APPLIED SCIENCES-BASEL, 11/11: 5253, DOI: 10.3390/app11115253
Rodrigues, M., R. Martins, J. Rogeiro, A. B. Fortunato, A. Oliveira, A. Cravo, J. Jacob, A. Rosa, A. Azevedo, P. Freire 2021. A Web-Based Observatory for Biogeochemical Assessment in Coastal Regions, Journal of Environmental Informatics, 38/1: 1.15. DOI:10.3808/jei.202100450
Fassoni-Andrade, A. C., Durand, F., Moreira, D., Azevedo, A., dos Santos, V. F., Funi, C., and Laraque, A.: Comprehensive bathymetry and intertidal topography of the Amazon estuary, Earth Syst. Sci. Data, 13, 2275–2291, https://doi.org/10.5194/essd-13-2275-2021, 2021.

Thesis / Dissertation

PhD Thesis

Finished

RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
Henrique Silva Fernandes Título: Computational studies addressed to PLP-Dependent enzymes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
Carla Sílvia Silva Teixeira Título: Computational studies addressed to multifunctional enzyme complexes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
Cátia Sofia dos Santos Pereira Novel insights on the interaction of lactoferrin with proton pumping ATPases towards understanding its antifungal and anticancer activities Programa Doutoral em Biologia Molecular e Ambiental Molecular (PDBMA), Univ Minho Concluída em Setembro de 2021
RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
Ana Paula Pereira Peixoto Search for new interactions in the top quark sector CERN-THESIS-2021-149.pdf
Emanuel Demétrio Mendes Gouveia Universidade do Minho Escola de Ciências Tese de Doutoramento Física Agosto de 2021 Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment at the LHC
Holography, QCD and Regge Theory Artur Jorge Carvalho Amorim de Sousa (https://hdl.handle.net/10216/136375)
PhD thesis of Paulo Braz, "Sensitivity to the 0νββ decay of 136Xe and development of Machine Learning tools for pulse classification for the LUX-ZEPLIN experiment”

Ongoing

GONÇALVES, C. (2019-present). Coleoid venoms: Predicting cephalotoxin function and biotechnological applications from ecological and evolutionary traits. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (January 2019). FCT grant ref. SFRH/BD/144914/2019
2021.07128.BD
2020.09087.BD
MARTINS, C. (2017-present). Carcinogenic toxicants and emerging pollutants. A comprehensive case-study on toxicant interactions in vivo and in vitro: from Molecular Toxicology to Environmental Risk Assessment. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (September 2017). FCT grant ref. SFRH/BD/120030/2016
Inês Raquel Carvalho Leonardo 2020.08210.BD Tecnologias Agrárias e Alimentares Portugal Universidade Nova de Lisboa
2021.07128.BD Rational Development of Nanomedicines for Cardiovascular Diseases.
2020.09087.BD In Silico Optimization of Biocatalysts for Plastic Biodegradation.
SFRH/BD/147276/2019 Development of biocidal formulations for effective biofouling control.
SFRH/BD/136594/2018 Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.
SFRH/BD/137844/2018 New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

Master Thesis

Finished

Phytoplankton community in the Algarve coastal region: implications to aquaculture production. MSc Thesis in Ciências do Mar. Universidade de Lisboa
CABRAL, I. (2020-present). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: submitted.
SANTOS, M.L. (2021). A transcriptomic approach to the metabolism of porphyrin-like pigments in a marine Polychaeta (Eulalia sp.). M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. 43 pp. + Appendix. Final status: Approved. Classification: 18 (0-20).
GROU, M. (2021). A molecular and pathophysiological approach to tissue regeneration in the planarian model. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 40 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).
PIMPÃO, A. (2021). Novel developments on the association of the AHR-CYP1A1 axis and arterial hypertension related to obstructive sleep apnea. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica (in collaboration with NOVA Medical School), Universidade Nova de Lisboa, Monte de Caparica, 77 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).
Mestrado Informação e Sistemas Empresariais, Univ. Aberta/IST da dissertação intitulada "Feature Selection using LAID and its Implementation on High-Performance Computing Systems" de Paulo Morgado, orientado por L. Cavique e defendido em novembro 2021.
P. Xavier and N. Galambaa) Effect of urea on the hydration and aggregation of hydrophobic and amphiphilic solute models: Implications to protein aggregation J. Chem. Phys. 155, 144501 (2021); https://doi.org/10.1063/5.0064707
Manghnani, K. (2021) Extraction and Visualization of Fake News Indicators (Tese de mestrado) - Instituto Superior Técnico, Universidade de Lisboa. Lisboa, Portugal.
Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.
"A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)
Mestrado Bolonha em Bioengenharia e Nanossistemas, IST/LISBOA "Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics" Gabriel Nascimento Serafim
Mariana Luz, Projecto de mestrado com o titulo: "Assessing the Prevalence of Transcription Readthrough in healthy tissues through computational approaches", Mestrado em Genetica Molecular e Biomedicina, FCT-NOVA;
Valerio Fiori, Projecto de mestrado com o titulo: "Finding Biomarkers of Metastatic Potential in Colorectal Cancer", Mestrado em Bioinformatica e Biologia Computacional, FCUL
B. Oliveira, "High-Pressure He/H2/O2 Mixtures Combustion on the ESTHER Driver: Experiment and Modeling", Ms.C. Thesis, Eng. Aeroespacial, Instituto Superior Técnico, Universidade de Lisboa.
Ricardo Silva (2021), Atomic structure calculations in lanthanide ions relevant to kilonovae,FCUL
André Cordeiro, Towards the space-time picture of a QCD parton shower, IST
Filipa Baltazar (2021), A Monte Carlo based study of the FLASH effect in radiotherapy with protons, IST
Miguel Martins, Measurement of the features of muon number distribution using MARTA engineering array, IST
Alexandra Fernandes, Measurement of the features of muon number distribution using MARTA engineering array, mestrado em Astronomia e Astrofisica da universidade do Porto
Pedro Costa, Detection of astrophysical neutrinos with a gamma-ray observatory, IST
Laura Peres, A novel energy reconstruction for high-energy gamma-ray wide field of view observatories, IST
Eduardo Ferreira, From light-front wave functions to parton distribution functions, IST MEFT
Nuno Fernandes, Development of GPU-Accelerated Trigger Algorithms for the ATLAS Experiment at the LHC, Mestrado em Engenharia Física Tecnológica IST
Maria Faria, Investigating the flavour anomalies through the rare beauty decay B0→K∗0μ+μ−, IST MEFT
Beatriz Pinheiro Pereira, Radiation damage of the optical components of the ATLAS TileCal calorimeter at the High-Luminosity LHC, IST MEFT

Conference Paper

J. Varela on behalf of the TOFHIR2 design team, TOFHIR2: The readout ASIC of the CMS Barrel MIP Timing Detector, CMS CR-2021/001
Anabela Oliveira, Alberto Azevedo, André B. Fortunato, Marta Rodrigues, João Rogeiro, Pedro Lopes, Samuel Bernardo, Jorge Gomes, João Pina, Mario David, 2021 (in press). OPENCoastS: a tailored coastal forecasting WebGIS service, Proceedings of the 3rd Conference of the Arabian Journal of Geosciences, 4 pp.
“Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.
“A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.
GONÇALVES, C., MOUTINHO CABRAL, I., RODRIGO, A.P., FONSECA,D., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A stinging issue: omics and computational tools for the bioprospecting of novel marine toxins. XII European Conference on Marine Natural Products. National University of Ireland, Galway (Ireland), August 2021.
MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. Jornadas Intercalares das Dissertações Anuais dos Mestrados dos Departamentos de Química e Ciências da Vida 2021. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), February 2021.
Deciphering the interaction of lactoferrin with V-ATPase towards a deeper understanding of its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)
Structure-based Virtual Screening, Molecular Dynamics and Free Energy calculations for the identification of novel inhibitors against biofilm formation by C.violaceum Fábio G. Martins, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)
Structure-based Virtual Screening,Molecular Dynamics and Free Energy calculations for the identification of New Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal
Specialized multi-level computational approach for the identification of novel quorum sensing inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa The 24th meeting of the International Society for Molecular Recognition, Affinity 2021 22-24 June 2021, Lisboa, Portugal (online)
Identification of potential quorum sensing inhibitors through structure-based virtual screening, molecular dynamics, and free energy calculations Fábio G. Martins, André Melo, Sérgio F. Sousa e-Conference on Innovation in Microbial Control, October 7-8 2021, Porto, Portugal (online)
Targeting the PQS system: Discovery of New Quorum Sensing Inhibitors for P. aeruginosa through an in silico methodology Tatiana F. Vieira, Rita P. Magalhães, Manuel Simões, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)
Machine Learning Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)
Using Biomolecular Simulations to Understand the Enzymatic Activity of Xanthine Oxidase Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira BioSeminars@UCIBIO July 21st 2021, Lisbon, Portugal (Online)
Exploring the Nitrate and Nitrite Reductase Activity of Xanthine Oxidase – a QM/MM study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira 12th Molybdenum and Tungsten Enzymes Conference (MoTEC 2021) September 28th to October 1st 2021, Marseille, France (Online)
The Nitrate and Nitrite Reductase Activity of Xanthine Oxidase: a Computational Study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira XXI SPB National Congress of Biochemistry October 14th to 16th 2021, Universidade de Évora, Évora, Portugal (Online) Note: Award Best Oral Communication
Developed of Inverted Virtual Screening Approaches for the Identification of Protein Targets Associated to the Biological Activity of Specific Molecules Tatiana F. Vieira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
A multidisciplinary approach to untangle the mechanisms behind the antifungal activity of lactoferrin Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real 15th International Conference on Lactoferrin: Structure, Function and Applications December 6-10th 2021, Beijing, China (online)
Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family: a step further to assure food safety and quality Inês CARVALHO LEONARDO, Martijn STAATS, Marleen VOORHUIJZEN, Valerie VAN DER VORST, Bas FRONEN, Jorge CAPELO, Maria Teresa BARRETO CRESPO, Frédéric BUSTOS GASPAR November 2021 ISEKI e-conference 2021 - Food Texture, Quality, Safety and Biosecurity in the Global Bioeconomy Online (Austria)
Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family for food safety and quality assurance Inês Carvalho Leonardo, Martijn Staats, Marleen Voorhuijzen, Valerie van der Vorst, Bas Fronen, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021
Two-particle Correlations in multi-Regge Kinematics, N. B. de Leon, G. Chachamis and A. S. Vera, arXiv:2112.13794 [hep-ph]; contribution to Low-x workshop 2021
New results on the modification of jet structure in Heavy Ion collisions, Helena Santos, on behalf of the ATLAS, ALICE and CMS Collaborations, PoS(LHCP2021)082, https://doi.org/10.22323/1.397.0082
Rare heavy-flavour decays, A. Boletti (on behalf of the ATLAS, CMS, and LHCb Collaborations), PoS(LHCP2021)139
Comparison of Voxel S-values and Monte Carlo Simulation in [177Lu]Lu-DOTA-TATE Quantification for Patient-Specific Dosimetry, Rodrigues, C., Ferreira, P., Oliveira, F. P. M., Silva, Â., Peralta, L., Costa, D. C., Eur J Nucl Med Mol Imaging, 48 (2021) S75, https://doi.org/10.1007/s00259-021-05547-1
Study of central exclusive production of top quark-antiquark pairs at LHC, M. Pisano, Nuovo Cimento 44C (2021) 66
Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição, P. Assis, F. Assunção, A. Bakalova, U. Barres de Almeida, C. Roque Bom, J. Correia, A. De Angelis, L.O. Dias, B. Serrano González, A. Guillén, G. La Mura, N. Lourenço, P. Machado, S. Marques, L. Mendes, M. Pimenta, R. Shellard, B. Tomé and J. Vicha, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 707, https://doi.org/10.22323/1.395.0707
Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 709, https://doi.org/10.22323/1.395.0709
New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories, R. Conceição, L. Peres, M. Pimenta and B. Tomé, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 711, https://doi.org/10.22323/1.395.0711
Search for new physics in b→sℓ+ℓ− transitions at CMS, A. Boletti, on behalf of the CMS Collaboration, PoS(ICHEP2020)365
The ATLAS Hardware Track Trigger performance studies for the HL-LHC, A. L. Moreira de Carvalho on behalf of the ATLAS Collaboration, PoS(LHCP2020)247
Jet substructure modification probes the QGP resolution length, J. Casalderrey-Solana, G. Milhano, D. Pablos and K. Rajagopal, Nucl.Phys.A 1005 (2021) 121904, 10.1016/j.nuclphysa.2020.121904
Impact of LHC jet data on Parton Distribution Functions, João Pires, PoS LHCP2020 (2020) 145, 10.22323/1.382.0145
Gamma-ray Astrophysics in the MeV Range The ASTROGAM Concept and Beyond, A. De Angelis, V. Tatischeff, S. Brandt, A. Bulgarelli, R. Curado da Silva, I. Grenier, L. Hanlon, D. H. Hartmann, M. Hernanz, G. Kanbach, I. Kuvvetli, P. Laurent, M. Mariotti, M. N. Mazziotta, J. Mc Enery, A. Morselli, K. Nakazawa, M. Pearce, J. Rico, X. Wu, S. Zane, A. Zoglauer, Exp. Astron. 51 (2021) 1225-1254, 10.1007/s10686-021-09706-y

Conference Poster

RODRIGO, A.P., GROSSO, A., MENDES, V.M., MANADAS, B., BATISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2021). Unveiling venomous annelids by combining omics with ecological traits: The example of a phyllodocid. 12th European Conference on Marine Natural Products, Galway (Ireland), September 2021.
Borges V. 2021 (23 March). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: Joint ECDC-WHO EURO virus characterisation working group meeting, World Health Organization (WHO) and European Centre for Disease Prevention and Control (ECDC)
MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.
Integrated biochemical and computational approach reveals novel mechanisms underlying the antifungal activity of the milk-derived lactoferrin protein Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real XXI SPB National Congress of Biochemistry 14-16th Oct 2021, Évora, Portugal (online)
Application of QM/MM methods for development of plastic degradation enzymes Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 6th 2021, Porto, Portugal (online)
Integrated in silico approach for the development of a new antipsychotic drug candidate to treat schizophrenia Rodrigo Andrade, Elina Marinho, Alba Iglesias, Jose Brea, Marián Castro, Filipe A. Almeida Paz, Filipe M. Areias, Maria I. Loza, Sérgio F. Sousa and M. Fernanda Proença Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal
Borges V. 2021. (23 March). Título: “Add-value of SARS-CoV-2 minor variant analysis: some practical examples”. I-MOVE-COVID-19 annual meeting.
Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho and Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP), May 7th 2021, Porto, Portugal
Molecular Docking, Molecular Dynamics, and Free Energy Calculations for Identification of New Drugs Against Biofilm Formation in P.aeruginosa Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Hünfeld 2021: Workshop on Computer Simulation and Theory of Macromolecules April 23-24 2021 (online)
Identification of Biofilm Formation Inhibitors in Pseudomonas aeruginosa through Virtual Screening, Molecular Dynamics, and Free Energy Calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online) Best Poster Communication
Bioinformatic applications for the development of plastic degradation enzymes using QM/MM Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)
Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)
3D Prediction of Non-B DNA Conformations Associated with MtDNA Genomic Instability André F. Pina, Sérgio F. Sousa, João Carneiro X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)
In silico methodology for the identification of new drugs against biofilm formation in P. aeruginosa Tatiana F. Vieira, Rita P. Magalhães, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)
Discovery of New Drugs Against Biofilm Formation in P.aeruginosa through Molecular Docking, Virtual Screening, Molecular Dynamics and MM/GBSA calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)
Elucidating the interaction of lactoferrin with V-ATPase towards understanding its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa. The 24th meeting of the International Society for Molecular Recognition, Affinity 2021, 22-24 June 2021 Note: Young investigator award
A Multi-Level Computational Approach in the Discovery of New Quorum Sensing Inhibitors for P. aeruginosa Tatiana F. Vieira , Cristina Sousa, Sérgio F. Sousa Paul Ehrlich (PE) Euro-PhD Network virtual meeting, MedChem2021 26-28 July 2021 (online)
Development of a Classification Model for the Identification of Targets to Known P.aeruginosa Biofilm Formation Inhibitors Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa Machine Learning in Quantum Physics and Chemistry Summer School 24 August to 3 September 2021, Warsaw, Poland Note: Award for 3rd Best Poster
Specialized Multi-Level Computational Approach For The Identification of Novel Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)
Optimization of a Drug Discovery Computer Aided Workflow for Identification of P.aeruginosa Quorum-Sensing Inhibitors Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)
The catalytic mechanism of Nitrilase 2: the role of the Cys-Glu-Lys catalytic triad Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa 18th European Symposium on Organic Reactivity (ESOR2021) 21-23 September 2021, Vrije Universiteit Amsterdam, The Netherlands (online)
The Cys-Glu-Lys catalytic triad from the nitrilase superfamily: a QM/MM study on Nitrilase 2 Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexel (virtual)
Unveiling the catalytic mechanism of the Cys-Glu-Lys catalytic triads using the Nitrilase 2 as a case study Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) 7December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Unraveling the Catalytic Mechanism of Threonine Aldolase, a potential biocatalyst for industrial application Juliana F. Rocha, Sérgio F. Sousa, Nuno M. F. S. A. Cerqueira FEBS 2021 Advanced Course - Computational Approaches to Understanding and Engineering Enzyme Catalysis October 19-22st 2021, Oulu, Finland (online) - Flash Talk
The Catalytic Mechanism of the SARS-Cov-2 Main Protease Henrique S. Fernandes, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Optimization of Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
A computational study on the catalytic mechanism of Pdx2: a glutaminase containing the Cys-His-Glu triad André F. Pina, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Specialized Multi-Level Computational Protocol for the Identification of Potential New Drugs Fábio G. Martins, Tatiana F. Vieira, Joel P. Moreira, Tiago Barbosa, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Unraveling the catalytic mechanism of Threonine aldolase - a critical enzyme in the pharmaceutical industry Juliana F. Rocha, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Bridging the gap between lactoferrin and V-ATPase through a multi-stage computational approach Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal
Molecular detection of species from the Boraginaceae family to safeguard food and feed safety, integrity, authenticity, and quality Inês Carvalho Leonardo, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021
The complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a food spoiler taint producing strain Inês Carvalho Leonardo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021
Adaptation of SPARK to atmospheric-pressure micro-plasma jet flow conditions Duarte Gonçalves, João Santos Sousa, Stéphane Pasquiers, Mário Lino da Silva, Luís Lemos Alves PLATHINIUM 2021
Sinval, J.; Vazquez, A.C.S.; Hutz, C.S.; Schaufeli, W.B.; Silva, S. Burnout Assessment Tool (BAT): Validity Evidence from Brazil and Portugal. Int. J. Environ. Res. Public Health 2022, 19, 1344. https://doi.org/10.3390/ijerph19031344
Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaborations, ISMD2021 - International symposium on multiparticle dynamics
Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaboration, 50th International Symposium on Multiparticle Dynamics
Evidence for local acceleration of heavy >10 MeV/n oxygen and sulphur in Jupiter's innermost radiation belts, Elias Roussos, Christina Cohen, Peter Kollmann, Marco Pinto, Patricia Gonçalves, Norbert Krupp, and Konstantinos Dialynas, Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-603
Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição et al., for the SWGO collaboration, 37th International Cosmic Ray Conference (Berlin)
Modeling the radiobiological effects of gold nanoparticles in proton therapy of glioblastomas, J. Antunes, F. Mendes, A. Paulo and J. M. Sampaio, PANIC 2021, Particles and Nuclei International Conference
Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, U. Barres de Almeida, A. De Angelis, R. Conceição, F. Longo, M. Pimenta, E. Prandini, E. Ruiz-Velasco, B. Tomé on behalf of the SWGO Collaboration, 37th International Cosmic Ray Conference (Berlin)
The BepiColombo Radiation Monitor, Pinto, M., Gonçalves, P., Cardoso, C., Sanchez-Cano, B., Moissl, R., Vainio, R., Oleynik, P., Huovelin, J., Korpela, S., Lehtolainen, A., Grande, M., and Marques, A., Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-204
Palestra/Webinar “Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.
Palestra/Webinar “A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.

Dataset

MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Comparative transcriptomics between two potential toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. GenBank OL606744-OL606747 (embargo pending)
Crispim Romao, Miguel; Castro, Nuno F.; Pedro, Rute; Simulated pp collisions at 13 TeV with 2 leptons + 1 b jet final state and selected benchmark Beyond the Standard Model signals. DOI: 10.5281/zenodo.5126747.

2020

Internationl Paper with refere

Nogueira PJ, de Araújo Nobre M, Nicola PJ, Furtado C, Vaz Carneiro A. Excess Mortality Estimation During the COVID-19 Pandemic: Preliminary Data from Portugal. Acta Med Port [Internet]. 2020 Jun. 1 [cited 2023 Jan. 23];33(6):376-83. https://doi.org/10.20344/amp.13928
Assunção, Hugo, et al. "University student engagement inventory (USEI): transcultural validity evidence across four continents." Frontiers in Psychology 10 (2020): 2796. https://doi.org/10.3389/fpsyg.2019.02796
Sinval, Jorge, and João Marôco. "Short index of job satisfaction: Validity evidence from Portugal and Brazil." PLoS One 15.4 (2020): e0231474. https://doi.org/10.1371/journal.pone.0231474
Marôco, João, et al. "Predictors of academic efficacy and dropout intention in university students: Can engagement suppress burnout?." PLoS One 15.10 (2020): e0239816. https://doi.org/10.1371/journal.pone.0239816
Nogueira, Paulo Jorge, et al. "The role of health preconditions on COVID-19 deaths in Portugal: evidence from surveillance data of the first 20293 infection cases." Journal of Clinical Medicine 9.8 (2020): 2368. https://doi.org/10.3390/jcm9082368
Manso J., Marcelino J., Caldeira L. (2018). Crushing and oedometer compression of rockfill using DEM. Computers and geotechnics - 101 (2018): 11-22.
Manso J., Marcelino J., Caldeira L. (2019). Effect of the clump size for bonded particle model on the uniaxial and tensile strength ratio of rock. International Journal of Rock Mechanics and Mining Sciences - 114 (2019): 131-140.
Manso J., Marcelino J., Caldeira L. (2020). Single-particle crushing strength under different relative humidity conditions. Acta Geotechnica (2020): 1-13.
Borges et al, 2020 (Emerging Microbes and Infections); https://doi.org/10.1080/22221751.2020.1844552
jorge Sinval et all. "Development of the Referee Shared Mental Models Measure (RSMMM)"Front. Psychol., 19 October 2020 | https://doi.org/10.3389/fpsyg.2020.550271
jorge Sinval et all. "Measurement Invariance of the Burnout Assessment Tool (BAT) Across Seven C", Int. J. Environ. Res. Public Health 2020, 17(15), 5604; https://doi.org/10.3390/ijerph17155604 - 03 Aug 2020
Joao Maroco et all. "Validation of the Portuguese version of the Community Assessment of Psychic Experiences and characterization of psychotic experiences in a Brazilian sample"Braz J Psychiatry. 2020 xxx-xxx;00(00):000-000 doi:10.1590/1516-4446-2019-0611
Sílvia Monteiro, Leandro Almeida, Cristiano Gomes & Jorge Sinval (2020): Employability profiles of higher education graduates: a person-oriented approach, Studies in Higher Education, DOI: 10.1080/03075079.2020.1761785
Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.
A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.
Orue-Echevarría, D., Castellanos, P., Sans, J., Emelianov, M., Vallés-Casanova, I., and Pelegrí, J. L. 2019. Temperature spatio-temporal correlation scales in the Brazil Malvinas Confluence from high-resolution in-situ and remote sensing data. Geophysical Research Letter. https://doi.org/10.1029/2019GL084246
Cabral, S., Carvalho, F., Gaspar, M., Ramajal, J., Sá, E., Santos, C., Silva, G., Sousa, A., Costa, J.L., Chainho, P. 2019. Non-indigenous species in soft-sediments: Are some estuaries more invaded than others? Ecological Indicators. In press. https://doi.org/10.1016/j.ecolind.2019.105640
Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044
Brito, A.C., Garrido-Amador, P., Gameiro, C., Nogueira, M., Moita, M.T., Cabrita, M.T. (2020). Integrating in situ and ocean color data to evaluate ecological quality under the Water Framework Directive. Water, 12, 3443.
Ferreira, A., Brotas, V., Palma, C., Borges, C., Brito, A.C. (in review). Assessing phytoplankton bloom phenology in upwelling-influenced regions using ocean colour remote sensing. Remote Sensing
Sent, G., Biguino, B., Favareto, L., Cruz, J., Sá, C., Dogliotti, A., Brotas, V., Brito, A.C. (in review). Deriving water quality parameters using Sentinel-2 imagery: A case study in the Sado estuary, Portugal. Remote Sensing.
Afonso, I., E. Berecibar, N. Castro, J.L. Costa, P. Frias, P. Moreira, P. Oliveira, F. Henriques, G. Silva & P. Chainho. (2020). Assessment of the colonization and dispersal success of non-indigenous species introduced in recreational marinas. Ecological Indicators 113: 106147. https://doi.org/10.1016/j.ecolind.2020.106147
Vieira, S., P. Barrulas , P. Chainho C. Dias, K. Sroczyńska & H. Adão (accepted). Multi-element composition as a tool for spatial and temporal habitat discrimination of the non-indigenous clam Ruditapes philippinarum (Adam & Reeve, 1850) populations. Ecological Indicators.
Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Alexandre, C.M., Quintella, B.R. 2020. Migration and escapement of silver eel males, Anguilla anguilla, from a southwestern European river. Ecology of Freshwater Fish, 29: 679-692. https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12545
Santis, W., Castellanos, P., Campos, E. J. D. 2020. Memory effect within the Southern Atlantic Subtropical Dipole variability. Journal of Climate. Vol 33, nº 17. 7679-7696. DOI: 10.1175/JCLI-D-19-0745.1
Orue-Echevarría, D., Pelegrí, J. L., Castellanos, P., Guallar, C., Marotta, H., Marrasé., Martín, J., Masdeu-Navarro, M., Paniagua, G.F., Peña Izquierdo, J., Puigdefábregas, J., Rodríguez-Fonseca, B., Roget, E., Rosell-Fieschi, M., Salat, J., Salvador, J., Vallés-Casanova, I., Vidal, M., Viúdez, A. 2020. Dataset on the RETRO-BMC cruise onboard the R/V Hespérides, April 2017, Brazil-Malvinas Confluence. Data in Brief Vol.30,105412. https://doi.org/10.1016/j.dib.2020.105412
https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.101504
https://journals.aps.org/prd/abstract/10.1103/PhysRevD.103.024020
https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.124009
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0239816
https://www.frontiersin.org/articles/10.3389/fpsyg.2019.02796/full#fun1
Pereira, C., Maranha, J. R. e Cardoso R. (2020). DEM analysis of some effects due to capillary forces in sands. E-Unsat 2020, Lisbon.
Maria Adriana Cardoso, Maria Céu Almeida, Rita S. Brito, João L. Gomes, Paula Beceiro, Anabela Oliveira (2020). 1D/2D stormwater modelling to support urban flood risk management in estuarine areas: Hazard assessment in the Dafundo case study. Journal of Flood Risk Management, https://doi.org/10.1111/jfr3.12663, 13(3).
Oliveira A, Fortunato AB, Rogeiro J., Teixeira J, Azevedo A, Lavaud L, Bertin A, Gomes J, David M, Pina J, Rodrigues M, Lopes P, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, 2020, Environmental Modelling & Software, 124, 104585
F.J.A.L. Cruz and J.P.B. Mota, "Equilibrium and Transport Distributions of a DNA Dodecamer in Hydrophilic Nanopores", Materials Today: Proceedings 2020, 20, 249.
P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2019). “RESCCUE RAF app – an IT solution for digital interactive urban resilience assessment”, 10th Iberian Grid Conference (IBERGRID), 23rd September 2019, Santiago de Compostela, Spain.
P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2020). “RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts” submitted to MIPRO 2020 – International Convention on Information, Communication and Electronic Technology, 28th September – 2nd October, Opatija, Croatia.
Carapeto A., Francisco A., Pereira P., Porto M. (eds.). (2020). Lista Vermelha da Flora Vascular de Portugal Continental. Sociedade Portuguesa de Botânica, Associação Portuguesa de Ciência da Vegetação – PHYTOS e Instituto da Conservação da Natureza e das Florestas (coord.). Coleção «Botânica em Português», Volume 7. Lisboa: Imprensa Nacional, 374 pp.
G. Aad et al. (ATLAS Collaboration), Search for resonances decaying into a weak vector boson and a Higgs boson in the fully hadronic final state produced in proton-proton collisions at $\sqrt{s}=13 TeV with the ATLAS detector. Phys. Rev. D 102, 112008 – Published 17 December 2020, https://doi.org/10.1103/PhysRevD.102.112008
Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, A. M. Vlaicu, J. P. Marques, J. M. Sampaio, M. Guerra, J. P. Santos, Ł. Syrocki, K. Słabkowska, E. Wȩder, M. Polasik, J. Rzadkiewicz, P. Indelicato, Y. Ménesguen, M.-Ch. Lépy, and F. Parente, Structure of $K{\ensuremath{\alpha}}{1,2}$- and $K{\ensuremath{\beta}}{1,3}$-emission x-ray spectra for Se, Y, and Zr. Phys. Rev. A 102, 052820 – Published 20 November 2020, http://dx.doi.org/10.1103/PhysRevA.102.052820
Nuno Castro, José Alves, Raul Sarmento, Medida da atenuação de raios cósmicos num edifício, gazeta de Física, Volume 43, Fascículo 2, Pag 9
L. Lopes, P.Assis, A. Blanco, P. Fonte, M. Pimenta, Towards sealed Resistive Plate Chambers, Journal of Instrumentation, Volume 15, November 2020, http://dx.doi.org/10.1088/1748-0221/15/11/C11009
Sandra Soares, Joaquim Kessongo, Yoenls Bahu and Luis Peralta, Comparison of Radon Mass Exhalation Rate Measurements from Building Materials by two Different Methods, Radiation Protection Dosimetry (2020), Vol. 191, No. 2, pp. 255-259, http://dx.doi.org/https://doi.org/10.1093/rpd/ncaa163
The Pierre Auger Collaboration, The Pierre Auger Observatory and its Upgrade, Science Reviews - from the end of the world (Argentina) Vol. 1, No. 4, September 2020 // pp. 8-33,
I. Syndikus, M. Petri, A.O. Macchiavelli, et al., Probing the Z=6 spin-orbit shell gap with (p,2p) quasi-free scattering reactions, Phys. Lett. B 809, 135748 (2020), http://dx.doi.org/10.1016/j.physletb.2020.135748
T. Aoyama, N. Asmussen, M. Benayoun, J. Bijnens, T. Blum et al., The anomalous magnetic moment of the muon in the Standard Model, Phys. Rept. 887 (2020) 1, http://dx.doi.org/https://doi.org/10.1016/j.physrep.2020.07.006
G. Eichmann, C. S. Fischer, W. Heupel, N. Santowsky, P. C. Wallbott, Four-quark states from functional methods, Few Body Syst. 61 (2020) 4, 38, http://dx.doi.org/https://doi.org/10.1007/s00601-020-01571-3
Nuno Castro, Mikael Chala, Ana Peixoto, Maria Ramos, Novel flavour-changing neutral currents in the top quark sector, JHEP 2020 (2020) 38, http://dx.doi.org/10.1007/JHEP10(2020)038
B. Aharmim et al. (SNO Collaboration), A search for hep solar neutrinos and the diffuse supernova neutrino background using all three phases of the Sudbury Neutrino Observatory, Phys. Rev. D 102, 062006, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.062006
P. C. Wallbott, G. Eichmann, C. S. Fischer, Disentangling different structures in heavy-light four-quark states, Phys. Rev. D 102 (2020) 5, 051501, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.051501
A. Knyazev, J. Park, P. Golubev, et al., Tl concentration and its variation in a CsI(Tl) crystal for the CALIFA detector, Nucl. Instr. and Methods A 975, 164197 (2020), http://dx.doi.org/10.1016/j.nima.2020.164197
J. M. Sampaio, M. Pinto, P. Gonçalves et al., Dose Measurements and Simulations of the RADFETs Response Onboard the Alphasat CTTB Experiments, IEEE Transactions on Nuclear Science, vol. 67, no. 9, pp. 2028-2033, Sept. 2020, http://dx.doi.org/10.1109/TNS.2020.3013035
N. Santowsky, G. Eichmann, C. S. Fischer, P. C. Wallbott, R. Williams, Sigma-meson: Four-quark versus two-quark components and decay width in a Bethe-Salpeter approach, Phys. Rev. D 102 (2020) 5, 056014, https://arxiv.org/abs/2008.07630
Felix Riehn, Ralph Engel, Anatoli Fedynitch, Thomas K. Gaisser, and Todor Stanev, The hadronic interaction model Sibyll 2.3d and extensive air showers, Phys.Rev.D 102 (2020) 6, 063002, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.063002
Mikael Chala, Paweł Kozów, Maria Ramos, Arsenii Titov, Effective field theory for vector-like leptons and its collider signals, Physics Letters B 809 (2020) 135752, http://dx.doi.org/10.1016/j.physletb.2020.135752
ATLAS Collaboration (2941 authors), Performance of the ATLAS muon triggers in Run 2, J. Instrum. 15 (2020) P09015, http://dx.doi.org/10.1088/1748-0221/15/09/P09015
Pierre Auger Collaboration (374 authors), Studies on the response of a water-Cherenkov detector of the Pierre Auger Observatory to atmospheric muons using an RPC hodoscope, J. Instrum. 15 (2020) P09002, http://dx.doi.org/10.1088/1748-0221/15/09/P09002
DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume III. DUNE far detector technical coordination, Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08009
DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume I. Introduction to DUNE., Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08008
DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume IV. The DUNE far detector single-phase technology, Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08010
D.S. Akerib et al., Search for two neutrino double electron capture of 124Xe and 126Xe in the full exposure of the LUX detector, J. Phys. G: Nucl. Part. Phys. 47 105105, https://arxiv.org/abs/1912.02742
G La Mura, G Chiaro, R Conceição, A De Angelis, M Pimenta, B Tomé, Detection of very-high-energy gamma-ray transients with monitoring facilities, Monthly Notices of the Royal Astronomical Society, Volume 497, Issue 3, September 2020, Pages 3142-314, http://dx.doi.org/https://doi.org/10.1093/mnras/staa2141
ATLAS Collaboration / CMS Collaboration (5203 authors), Combination of the W boson polarization measurements in top quark decays using ATLAS and CMS data at 8 TeV, J. High Energy Phys. 8 (2020) 051, http://dx.doi.org/10.1007/JHEP08(2020)051
CMS and LHCb Collaborations, Combination of the ATLAS, CMS and LHCb results on the B0(s)->mu+mu- decays, http://cds.cern.ch/record/2727216
M. Gallinaro et al., Higgs boson potential at colliders: Status and perspectives, Review in Physics 5 (2020) 100045, http://dx.doi.org/https://doi.org/10.1016/j.revip.2020.100045
Joaquim Kessongo, Yoenls Bahu, Margarida Inacio, Luis Peralta, Sandra Soares, Radon concentration potential in Bibala municipality water: Consequences for public consumption. Radiat. Phys. Chem. 173 (2020) 108951, http://dx.doi.org/10.1016/j.radphyschem.2020.108951
Soraia Elisio, Luis Peralta, Development of a low-cost monitor for radon detection in air, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 969 (2020) 164033, http://dx.doi.org/10.1016/j.nima.2020.164033
M. Anderson et al. (SNO+ Collaboration), Measurement of neutron-proton capture in the SNO+ water phase, Phys. Rev. C 102, 014002, http://dx.doi.org/10.1103/PhysRevC.102.014002
CMS Collaboration, Measurement of the CP-violating phase Phis in the B0s-> J/psiPhi(1020) ->mu+mu-K+K- channel in proton-proton collisions at 13 TeV, https://arxiv.org/abs/2007.02434
L. Apolinário, J. Barata, J. G. Milhano, On the breaking of Casimir scaling in jet quenching, Eur. Phys. J. C 80, 586 (2020), http://dx.doi.org/10.1140/epjc/s10052-020-8133-1
C. Andrés, L. Apolinário, F. Dominguez, Medium-induced gluon radiation with full resummation of multiple scatterings for realistic parton-medium interactions, JHEP 07 (2020) 114, http://dx.doi.org/10.1007/JHEP07(2020)114
Avik Roy, Nikiforos Nikiforou, Nuno Castro, Timothy Andeen, Novel Interpretation Strategy for Searches of Singly Produced Vector-like Quarks at the LHC, Phys. Rev. D 101 (2020) 115027, http://dx.doi.org/10.1103/PhysRevD.101.115027
P. Socha, M. Pinto, W. Hajdas and P. Gonçalves, Beam test results of a prototype of the Radiation Hard Electron Monitor to be flown in the JUICE mission, Journal of Instrumentation, Volume 15, June 2020 IPRD19, http://dx.doi.org/10.1088/1748-0221/15/06/C06032
CMS Collaboration, Measurement of B0s and B+ meson yields in PbPb collisions at sqrt(sNN)=5.02 TeV, CMS-PAS-HIN-19-011, http://cds.cern.ch/record/2719500?ln=en
M. Askins et al (incl. V. Lozza, N. Barros, J. Maneira, Theia: An advanced optical neutrino detector, Eur. Phys. J. C (2020) 80:416, http://dx.doi.org/https://doi.org/10.1140/epjc/s10052-020-7977-8
J. Agarwala et al. (COMPASS Coll.), Contribution of exclusive diffractive processes to the measured azimuthal asymmetries in SIDIS, Nucl. Phys. B 956 (2020) 115039, http://dx.doi.org/https://doi.org/10.1016/j.nuclphysb.2020.115039
CMS Collaboration (2286 authors), Measurement of properties of B(s)(0)s -> mu(+)mu(-) decays and search for B-0 -> mu(+)mu(-) with the CMS experiment, J. High Energy Phys. 4 (2020) 188, http://dx.doi.org/10.1007/JHEP04(2020)188
CMS Collaboration (2284 authors), Constraints on the chi(c1) versus chi(c2) polarizations in proton-proton collisions at 8 TeV, Phys. Rev. Lett. 124 (2020) 162002, http://dx.doi.org/10.1103/PhysRevLett.124.162002
M. Gallinaro et al., Timing performance of a Micro-Channel-Plate photomultiplier tube, Nucl. Instr. Meth. 960, 21 April 2020, 163592 (arXiv:1909.12604), http://dx.doi.org/10.1016/j.nima.2020.163592
ATLAS Collaboration (2929 authors), ATLAS data quality operations and performance for 2015-2018 data-taking, J. Instrum. 15 (2020) P04003, http://dx.doi.org/10.1088/1748-0221/15/04/P04003
M. Gallinaro et al., Deep diffused Avalanche photodiodes for charged particles timing, Nucl. Instr. Meth. 958 (2020) 162405 (arXiv:1903.07482), http://dx.doi.org/10.1016/j.nima.2019.162405
Maura Barros, Nuno Filipe Castro, Johannes Erdmann, Gregor Gebner, Kevin Kroninger, Salvatore La Cagnina, Ana Peixoto, Study of interference effects in the search for flavour-changing neutral current interactions involving the top quark and a photon or a Z boson at the LHC, Eur. Phys. J. Plus 135 (2020) 339, http://dx.doi.org/10.1140/epjp/s13360-020-00346-3
Pablo Orviz, Mário David, Jorge Gomes, Doina Cristina Duma, Elisabetta Ronchieri, Davide Salomoni, Software Quality Assurance in INDIGO-DataCloud Project: a Converging Evolution of Software Engineering Practices to Support European Research e-Infrastructures, J. Grid Comput. 18 (2020) 81-98, http://dx.doi.org/10.1007/s10723-020-09509-z
LUX-ZEPLIN Collaboration (178 authors), Projected WIMP sensitivity of the LUX-ZEPLIN dark matter experiment, Phys. Rev. D 101 (2020) 052002, http://dx.doi.org/10.1103/PhysRevD.101.052002
CMS Collaboration (2307 authors), Measurement of the top quark pair production cross section in dilepton final states containing one tau lepton in pp collisions at sqrt(s)=13 TeV, J. High Energy Phys. 2 (2020) 191, http://dx.doi.org/10.1007/JHEP02(2020)191
M. Crispim Romao, N. F. Castro, R. Pedro, T. Vale, Transferability of Deep Learning Models in Searches for New Physics at Colliders, Phys. Rev. D 101 (2020) 035042, http://dx.doi.org/10.1103/PhysRevD.101.035042
ATLAS Collaboration (2892 authors), Measurement of the azimuthal anisotropy of charged-particle production in Xe plus Xe collisions at root S-NN=5.44 TeV with the ATLAS detector, Phys. Rev. C 101 (2020) 024906, http://dx.doi.org/10.1103/PhysRevC.101.024906
G. Strong, On the impact of selected modern deep-learning techniques to the performance and celerity of classification models in an experimental high-energy physics use case, 2020 Mach. Learn.: Sci. Technol. 1, 045006, https://doi.org/10.1088/2632-2153/ab983a
A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, S.Bernardo, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, Environmental Modelling & Software, 2019, 104585, ISSN 1364-8152, http://dx.doi.org/10.1016/j.envsoft.2019.104585
Álvaro López García; Jesus Marco, Marica Antonacci, Wolfgang zu Castell, Mario David, Marcus Hardt; Lara Lloret Iglesias; Viet Tran; Germán Moltó, Marcin Plociennik, Andy S Alic, Miguel Caballer, Isabel Campos Plasencia, Alessandro Costantini, Stefan Dlugolinsky, Doina Cristina Duma, Giacinto Donvito, Jorge Gomes, Ignacio Heredia, Keiichi Ito, Valentin Kozlov, Giang SCC Nguyen, Pablo Orviz Fernandez, Zdenek Sustr, Pawel Wolniewicz. A cloud-based framework for machine learning workloads and applications, http://dx.doi.org/10.1109/ACCESS.2020.2964386
J. Casalderrey-Solana, G. Milhano, D. Pablos and K. Rajagopal, Modification of Jet Substructure in Heavy Ion Collisions as a Probe of the Resolution Length of Quark-Gluon Plasma, JHEP 2001 (2020) 044, http://dx.doi.org/10.1007/JHEP01(2020)044
F. Domínguez, J. G. Milhano, C. A. Salgado, K. Tywoniuk, V. Vila, Mapping collinear in-medium parton splittings, Eur.Phys.J. C80 (2020) no.1, 11, http://dx.doi.org/10.1140/epjc/s10052-019-7563-0
M. Gallinaro et al., Deep diffused APDs for charged particle timing applications: Performance after neutron irradiation, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 949 (2020) UNSP 162930, http://dx.doi.org/10.1016/j.nima.2019.162930

National paper

Manso, J., Marcelino, J., Caldeira, L.. (2018a) – Estudo da evolução granulométrica em ensaios edométricos de enrocamento, com controlo de sucção. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018;
Manso, J., Marcelino, J., Caldeira, L.. (2018b) – Discrete numerical modelling of the mechanical behaviour of rockfill in a oedometer test with suction control. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018.
Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia

Books

Lista Vermelha da Flora Vascular de Portugal Continental – ISBN: 978-972-27-2870-6 - versão impressa
Lista Vermelha da Flora Vascular de Portugal Continental - ISBN: 978-972-27-2876-8 - versão digital – disponível em dois sítios:
- https://listavermelha-flora.pt/wp-content/uploads/2020/10/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf
- http://spbotanica.pt/docs/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

Finished

Pereira, C. (2020). Formulation of an advanced effective stress based constitutive model for unsaturated soils. PhD Thesis, IST, Lisbon,
Mendes, D. (2020). Modelling infra-gravity waves in coastal areas, Tese de Doutoramento em Engenharia Civil, IST.
Giles Strong (2020). Deep Learning methods applied to Higgs physics at the LHC, PhD Thesis. Instituto Superior Tecnico.
Oleksii Toldaiev (2020). Top quark physics and search for physics beyond the Standard Model at the Large Hadron Collider. PhD Thesis, Instituto Superior Tecnico.
Ricardo Luz (2020). Development of the instrumentation and readout schemes of MARTA, an upgrade to the Pierre Auger Observatory. PhD Thesis, Instituto Superior Tecnico.
João Marcos (2020). Real-time statistical event reconstruction for medical scintillation cameras. PhD Thesis, University of Coimbra.
Miguel Moita (2020). ASTROGAM Space Gamma-ray Telescope Main Instrument Development, Doctoral program in Applied Physics and Physical Engineering, University of Coimbra.

Ongoing

Manso J. (2017). Predicting the behaviour of rockfill embankments. Instituto Superior Técnico Universidade de Lisboa.
Luís Borges-Araújo Institute for Bioengineering and Biosciences, Instituto Superior Técnico: PD/BD/137492/2018
Mariana de Oliveira Farinha Fidalgo Valério Universidade Nova de Lisboa / Instituto de Tecnologia e Química Biológica: SFRH/BD/148542/2019
PhD thesis de Paulo Santos (LASIGE/FCUL) (https://www.lasige.pt/member/paulo-santos)
PhD thesis de Guilherme Espada (LASIGE/FCUL) (https://www.lasige.pt/member/guilherme-espada)
João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018
Biology and ecology of allis shad in Portugal: contributions of fluvial restoration and participated management to its conservation. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/123434/2016)
Catadromous migration of the Thinlip grey mullet (Liza ramada Risso, 1827) and its importance to fluvial ecosystems. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/121042/2016)
Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
Water quality indexes for Estuarine Waters: assessment of temporal and spatial variability. PhD Thesis, Universidade de Lisboa (EARTHSYSTEMS FCT – Programa Doutoral – PD/BD/135064/2017)
Evaluating the design and size adequacy of a Marine Protected Area to promote small-scale artisanal fisheries management. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (Bolsa FCT referência SFRH/BD/131868/2017)
Assessment of anthropogenic impacts on the European Eel in Portugal. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (EARTHSYSTEMS FCT – Programa Doutoral - PD/143/2012) RuiMonteiro
Phytoplankton response to climate change on the North Atlantic and Southern Ocean. PhD Thesis. Universidade de Lisboa. (FCT- SFRH/BD/144586/2019)
Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. MSc Thesis in Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências
Bio-optical properties of Portuguese coastal waters with emphasis on the detection of Functional Types of Phytoplankton. PhD Thesis, Universidade de Lisboa (Bolsa CNPq referência 200589/2019-9)

Master Thesis

Finished

Automatic conversion of ADA source code to scala, Espada, Guilherme Jorge Nunes Monteiro (https://repositorio.ul.pt/handle/10451/48217)
Bayesian approach to Ecological Monitoring data: Latent Growth Curve Models. Mestrado em Bioestatística, Universidade de Lisboa, Faculdade de Ciências.
Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
MSc thesis de Máximo Oliveira (LASIGE/FCUL)
Rita Afonso Population genomics of the endangered seabird Bermuda Petrel (Pterodroma cahow). Mestrado em Biologia Evolutiva e do Desenvolvimento, Faculdade de Ciências, Universidade de Lisboa
Luis Coelho (2020), Study of the CP nature of the top-Higgs coupling in ttH events at the LHC, MSc Thesis in Physics, University of Coimbra, Faculty of Sciences
Joana Mingacho (2020), Terrestrial Gamma-ray Flashes analysis for Aircraft Transport Safety, Master in Engineering physics, University of Coimbra, Faculty of Sciences
Joana Antunes, Simulations of radiosensitization efficacy of nanoparticles in proton therapy, Mestrado Integrado em Engenharia Biomédica e Biofísica, Universidade de Lisboa, Faculdade de Ciências.
Maura Teixeira, Search for Dark Matter in Monotop Events at the Large Hadron Collider, Master in Physics, University of Minho
Jacinto Fonseca, Detection of Magnetic Inelastic Dark Matter, Master in Physics, University of Coimbra
Matteo Magherini, Vector Boson Scattering with a tau lepton in the final state in proton-proton collisions at the Large Hadron Collider, MSc Univ. of Perugia
Ricardo Barrué, Study of the ATLAS sensibility to anomalous Spin/CP components in the HWW vertex, MSc in Physics Engineering, IST

ongoing

Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.

Conference Paper

"A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020
P. Lopes; A. Oliveira; C. Pereira; R. S. Brito; M. A. Cardoso; R. Martins; M. David; J. Gomes; J. Pina et al., "RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts," 2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO), Opatija, Croatia, 2020, pp. 1651-1655, doi: 10.23919/MIPRO48935.2020.9245231.
CAMPUZANO F., SOBRINHO J., RODRIGUES M., NUNES S., CASTELLANOS P., ALMADA F., FERNANDES C.S., PASCOAL A., NEVES R., OLIVEIRA A., OLIVEIRA A., BROTAS V. (2020). Desenvolvimento dum observatório costeiro para a Área Metropolitana de Lisboa. 6as Jornadas de Engenharia Hidrográfica/1as Jornadas Luso-Espanholas de Hidrografia, 408-411
Manso, J., Marcelino, J., Caldeira, L.. (2018) – Settlement Analysis of the Montesinho CFRD. Third International DAM WORLD Conference – DAMWORLD 2018, Foz do Iguaçu, Brasil, 17 e 21 de setembro de 2018.
Manso, J., Marcelino, J., Caldeira, L.. (2019) "Settlement analysis of the Montesinho concrete-face rockfill dam", XVII European Conference on Soil Mechanics and Geotechnical Engineering – XVII ECSMGE-2019, Reykjavík, Islândia, 1 a 7 de setembro de 2019.
Manso, J., Marcelino, J., Caldeira, L.. (2020) "Yielding of rockfill in triaxial experiments", DAM WORLD Webinar, evento online, emitido a partir de Lisboa, 22 a 24 de setembro de 2020.
R. Pedro, Operation and Performance of the ATLAS Tile Calorimeter, J. Phys.: Conf. Ser. 1690 012045
B. Pereira on behalf of the ATLAS Collaboration, Radiation hardness of the atlas tile calorimeter optical components, J. Phys.: Conf. Ser. 1690 012053
Laura Sargsyan and Filipe Martins, Evaluation of a new visualization and analytics solution for slow control data for large scale experiments, EPJ Web of Conferences 245, 07001 (2020), https://doi.org/10.1051/epjconf/202024507001
L. Apolinário, Time evolution of a medium-modified jet, PoS EPS-HEP2019 (2020) 296, http://dx.doi.org/10.22323/1.364.0296
Helena Santos, Jet Production in Heavy Ion Collisions with the ATLAS Experiment, PoS 2020, vol. 364, p. 286, https://pos.sissa.it/364/286/
P.Lopes, A.Oliveira, C.Pereira, R.S.Brito, M.A.Cardoso, R.Martins, M.David, J.Gomes, J.Pina, RESCCUE RAF App - Using Technology to Mitigate Climate Change Urban Impacts, Mipro2020, ISSN 1847-3946, pp 1959-1963
M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Europlanet Science Congress 2020, online, 21 September-9 Oct 2020, EPSC2020-311, 2020, http://dx.doi.org/10.5194/epsc2020-311
G. Strong et al., Muon Energy Measurement from Radiative Losses in a Calorimeter for a Collider Detector, https://arxiv.org/abs/2008.10958
Shoaib Sufi et.al, Report on the Workshop on Sustainable Software Sustainability 2019 (WOSSS19), http://dx.doi.org/10.5281/zenodo.3922155
M. Gallinaro et al., Precise timing with the PICOSEC-Micromegas detector, Nuovo Cim. C 43 (2020) 1, https://doi.org/10.1393/ncc/i2020-20013-8
M. Gallinaro et al., Beyond the Standard Model in Vector Boson Scattering signatures, https://arxiv.org/abs/2005.09889
M. Gallinaro et al., Single photoelectron time resolution studies of the PICOSEC-Micromegas detector, JINST 15(2020) 04, C04053, https://doi.org/10.1088/1748-0221/15/04/C04053
Agostinho Gomes, Jose Augusto, Filipe Cuim, Guiomar Evans, Rui Fernandez, Luis Gurriana, Filipe Martins, Upgrade of the ATLAS Tile Calorimeter High Voltage System, ATL-TILECAL-PROC-2019-008, PoS 370-062, http://dx.doi.org/10.22323/1.370.0062
G. Strong, HiggsML Lumin Code: supporting arXiv:2002.01427, https://doi.org/10.5281/zenodo.3754669
M. Gallinaro et al., Progress on the PICOSEC-Micromegas Detector Development: Towards a precise timing, radiation hard, large-scale particle detector with segmented readout, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 958 (2020) 162877, http://dx.doi.org/10.1016/j.nima.2019.162877
V. Lozza for the SNO+ Collaboration, Backgrounds Analysis for the SNO+ Experiment, Proceedings of TAUP 2019, to be published in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/1468/1/012135

Conference Poster

RODRIGUES M., MARTINS R., ROGEIRO J., OLIVEIRA A., FORTUNATO A.B., AZEVEDO A., FREIRE P., CRAVO A., JACOB J., ROSA A. (2020). The UBEST observatory: an innovative HPC-based portal for water quality management in coastal regions. EOSC week 2020, 1pp.
Borges V. 2020 (20 May). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: ECDC COVID-19 Laboratory Networks Influenza, European Centre for Disease Prevention and Control (ECDC)
Borges and Isidro, 2020 (10 October). Genetic diversity of the novel coronavirus SARS-CoV-2 (COVID-19) in Portugal; XV CICS-UBI Symposium CICS-UBI.
Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia. LNEC, 3 a 6 de maio de 2020 (adiado).
Palestra/Webinar «A flora ameaçada de Portugal continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 8 de Maio de 2020, integrada no «BioLousada em Casa», organizado pela Câmara Municipal de Lousada.
Palestra/Webinar «A flora ameaçada de Portugal continental», por Paulo Pereira (Sociedade Portuguesa de Botânica), a 5 de Outubro de 2020, integrada no Festival de Observação de Aves & Actividades de Natureza/Festival Bird Watching, em Sagres, organizado pela Sociedade Portuguesa para o Estudo das Aves, pela Câmara Municipal de Vila do Bispo e pela Associação Almargem.
Comunicação «Apresentação da publicação ‘Lista Vermelha da Flora Vascular de Portugal Continental’ e considerações finais», por Ana Francisco (Sociedade Portuguesa de Botânica), a 13 de Outubro de 2020, integrada na Conferência Pública «Plantas em Risco de Extinção: A Lista Vermelha da Flora Vascular de Portugal Continental», realizada na Fundação Calouste Gulbenkian (auditório 2), em Lisboa, organizada pela Sociedade Portuguesa de Botânica.
URL da comunicação: https://listavermelha-flora.pt/wp-content/uploads/2020/11/07_PDF_AnaFrancisco.pdf
Logótipo da INCD apresentado no slide 21 da comunicação.
Palestra/Webinar «Lista Vermelha da Flora Vascular de Portugal Continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 4 de Novembro de 2020, para a turma do 10ª ano da Escola Secundária Pedro Nunes, em Lisboa.
P. Figueiredo, G. Lage, P. Conde Muíño, R. Pedro, Investigando as interações entre o bosão de Higgs e o W com ATLAS Open Data, Conferência Nacional de Física (Física 2020), Lisboa
Carolina Costa, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferência Nacional de Física (Física 2020), Lisboa
Rita Silva, AMBER Experiment at CERN, Jornadas LIP, Braga, Portugal
A.S. Alic, M. Antonacci, M. Caballer, I. Campos, A. Costantini, M. David, S. Dlugolinsky, G. Donvito, C. Duma, J. Gomes, M. Hardt, I. Heredia, L. Hluchy, K. Ito, V. Kozlov, L. Lloret, A. López García, J. Marco, L. Matyska, G. Moltó, G. Nguyen, P. Orviz, M. Plociennik, Z. Šustr, V. Tran, P. Wolniewicz, W. zu Castell, DEEP framework for deep learning, ISC High Performance 2020, Frankfurt
Susana Santos, Determination of the Higgs CP properties in hadron colliders, Jornadas LIP, Braga, Portugal
Rute Pedro, Machine Learning in the Search for New Physics Phenomena at the LHC, Jornadas do LIP, Braga, Universidade do Minho
M. Moita, N. Auricchio, E. Caroli, R. M. Curado da Silva, G. De Cesare, S. Del Sordo, J. M. Maia, J. Stephen, E. Virgilli, Monte Carlo study of a 3D CZT Spectroscopic-imager for Scattering Polarimetry, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
Ana Peixoto, Novel flavour-changing neutral currents in the top quark sector, Poster session at the TOP2020 international conference
Luís Sintra, Luísa Arruda, Patrícia Gonçalves, Particle Energy Spectra Reconstruction of the MFS Data using Machine Learning Techniques, Jornadas Científicas LIP 2020, Universidade do Minho, Braga
M. Moita, R. M. Curado da Silva, J. M. Maia, G. Salgado, G. Canezin, C. Kierans, R. Caputo, J. E. McEnery, Polarimetric Potential of AMEGO-X Mission Proposal, XXX Encontro Nacional de Astronomia e Astrofísica, Instituto de Astrofísica e Ciências do Espaço, Porto
Miguel Moita, Polarimetric Potential of AMEGO-X Mission Proposal, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
Emanuel Gouveia, Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment, LIP Jornadas, Braga, Universidade do Minho
Diogo de Bastos, Prospects at the High-Luminosity LHC with the CMS experiment, Particle physics for the future of Europe, IST, Lisbon
B. Pereira, Radiation hardness of the atlas tile calorimeter optical components, ICPPA 2020, Virtual World - Moscow
Coelho, Luis Felipe and Goncalo, R. and Gouveia, E. D. and Moreira De Carvalho, A. L. and Onofre, A., Search for CP-odd ttH production in the H -> bb decay channel, 6th IDPASC/LIP PhD Students Workshop, Portugal
Luis Coelho, Search for CP-odd ttH production in the H->bb decay channel with ATLAS, 6th IDPASC PhD students workshop,
Ana Peixoto, Search for Flavour Changing Neutral Currents interactions in the tZq vertex with the ATLAS Experiment at 13 TeV, LIP Jornadas 2020, Braga, Universidade do Minho
Tiago Vale, Search for vector-like quarks with the ATLAS Experiment, LIP Jornadas, Braga, Universidade do Minho
C. Costa, R. Barrué, P. Conde Muíño, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferencia Nacional de Física (Física 2020)
Ricardo Barrué, Sensitivity to anomalous HWW couplings at ATLAS, LIP Jornadas, Braga, Universidade do Minho
N.Leonardo, S. Fonseca, E. Melo, A.Jales, T.Gaehtgens, Study of the efficiency of muon identification algorithm with Tag and Probe method using CMS Open Data, Fisica 2000
Ana Carvalho, Ricardo Gonçalo, Patricia Conde, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, 8th Conference of Large Hadron Collider Physics
Ana Luísa Moreira de Carvalho, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, LHCP 2020
M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Outer planet moon - magnetosphere interaction workshop
S. Andringa, A. Blanco, P. Dobrilla, R. Gonçalo, D. Gonçalves, G. Gouveia, L. Lopes, J. Pereira, Um dispositivo móvel baseado em RPCs para tomografia de muoes, FÍSICA 2020 - 22ª Conferência Nacional de Física,
A. Blanco, P. Fonte, L. Lopes, E. Neves, J. Saraiva e M. Veiga, Um novo detetor de tempo de voo para a experiência HADES, FÍSICA 2020 - 22ª Conferência Nacional de Física
Sara Mesquita, Lília Perfeito and Joana Gonçalves de Sá, Using pandemic periods to improve now-casting models based on search engine data, Complex Networks 2020, Madrid

Datasets

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954

2019

Journal Paper with direct contribution

A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, Environmental Modelling & Software, 2019, 104585,ISSN 1364-8152, https://doi.org/10.1016/j.envsoft.2019.104585.
Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins, Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
F.J.A.L. Cruz, Saman Alavi, J.P.B. Mota, "Low-temperature Thermodynamic Study of the Metastable Empty Clathrate Hydrates using Molecular Simulations", ACS. Earth Space Chem. 3 (2019) 789
Oliveira A.; Rodrigues, M.; Rogeiro, J.; Fortunato, A. B.; Teixeira, J.; Azevedo, A.; Lopes, P. (2019) OPENCoastS: An Open-Access App for Sharing Coastal Prediction Information for Management and Recreation. In: Rodrigues J. et al. (eds) Computational Science – ICCS 2019. ICCS 2019. Lecture Notes in Computer Science, vol 11540. Springer, https://doi.org/10.1007/978-3-030-04849-5_44
Anabela Oliveira, André Fortunato, João Rogeiro, Joana Teixeira, Alberto Azevedo, Laura Lavaud, Xavier Bertin, Jorge Humberto Lúcio Oliveira Gomes, Mario David, Joao Pina, Marta Rodrigues, Pedro Lopes (2019) OPENCoastS: an open-access service for the automatic generation of coastal forecast systems. In: ENVSOFT_2019_458 _R1 (Accepted, Ready for Decision)
Automatic Design of Artificial Neural Networks for Gamma-Ray Detection Filipe Assunção, João Correia, Rúben Conceição, Mário Pimenta, Bernardo Tomé, Nuno Lourenço, Penousal Machado IEEE Access, Vol 7 (2019) 110531 10.1109/ACCESS.2019.2933947
Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Barros, Maneira, Prior Phys. Rev. D 99, 032013 10.1103/PhysRevD.99.032013
Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto Accepted for publication on IEEE Transactions on Nuclear Science on 04 Oct 2018, 10.1109/TNS.2019.2900398 10.1109/TNS.2019.2900398
Gravitational wave and collider probes of extended Higgs sectors with a low cutoff Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP) Eur. Phys. J. C (2019) 79: 156 10.1140/epjc/s10052-019-6655-1
Search for invisible modes of nucleon decay in water with the SNO+ detector M. Anderson et al. (The SNO+ Collaboration) Phys. Rev. D 99, 032008 10.1103/PhysRevD.99.032008
GUIMesh: a tool to import STEP geometries into Geant4 via GDML M. Pinto, P. Gonçalves accepted for publication on Computer Physics Communications, 10.1016/j.cpc.2019.01.024 10.1016/j.cpc.2019.01.024
β decay of 133 In : γ emission from neutron-unbound states in 133 Sn M. Piersa, et al. Phys. Rev. C 99, 024304 (2019) 10.1103/PhysRevC.99.024304
Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds M. Anderson et al. (SNO+ Collaboration) Phys. Rev. D 99, 012012 (2019) 10.1103/PhysRevD.99.012012
Boron-10 lined RPCs for sub-millimeter resolution thermal neutron detectors: Feasibility study in a thermal neutron beam L.M.S. Margato, A. Morozov, A. Blanco, P. Fonte, F.A.F. Fraga, B. Guerard, R. Hall-Wilton, C. Höglunde, A. Mangiarotti, L. Robinson, S. Schmidt and K. Zeitelhack 2019 JINST 14 P01017 10.1088/1748-0221/14/01/P01017
Search for vector-boson resonances decaying to a top quark and bottom quark in the lepton plus jets final state in $pp$ collisions at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B788 (2019) 347-370 10.1016/j.physletb.2018.11.032
Measurement of the Gamma Ray Background in the Davis Cavern at the Sanford Underground Research Facility, D. Akerib et al, Astroparticle Physics Volume 116, 2020, 102391, 10.1016/j.astropartphys.2019.102391
Hadronic interaction model sibyll 2.3 c and inclusive lepton fluxes, Anatoli Fedynitch, Felix Riehn, Ralph Engel, Thomas K. Gaisser, and Todor Stanev, Phys. Rev. D 100, 103018, 10.1103/PhysRevD.100.103018
Role of the t(t)over-barh rest frame in direct top-quark Yukawa coupling measurements, Andrea Ferroglia, Miguel C. N. Fiolhais, Emanuel Gouveia, and António Onofre, Phys. Rev. D 100, 075034, 10.1103/PhysRevD.100.075034
Calculations for deep inelastic scattering using fast interpolation grid techniques at NNLO in QCD and the extraction of alpha_s from HERA data, D. Britzger, J. Currie, A. Gehrmann-De Ridder, T. Gehrmann, E.W.N. Glover, C. Gwenlan, A. Huss, T. Morgan, J. Niehues, J. Pires, K. Rabbertz, M.R. Sutton, Eur.Phys.J. C79 (2019) no.10, 845, 10.1140/epjc/s10052-019-7351-x
Beam test results of the RADEM Engineering Model, M.Pinto, P. Gonçalves, P. Socha, W. Hajdas, A. Marques, J.Costa Pinto, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 10.1016/j.nima.2019.162795
Dark Matter Benchmark Models for Early LHC Run-2 Searches: Report of the ATLAS/CMS Dark Matter Forum, D. Abercrombie et al. Phys. Dark Univ. 27 (2020) 100371, 10.1016/j.dark.2019.100371
Measurement of B-s(0) meson production in pp and PbPb collisions at root S-NN=5.02 TeV, CMS Collaboration (2263 authors), Phys. Lett. B 796 (2019) 168-190, 10.1016/j.physletb.2019.07.014
Differential Dijet Cross Section at the LHC, Aude Gehrmann-De Ridder, Thomas Gehrmann, E.W.N. Glover, Alexander Huss, Joao Pires, Phys. Rev. Lett. 123, 102001 (2019), 10.1103/PhysRevLett.123.102001
Improved measurements of the β -decay response of liquid xenon with the LUX detector, D Akerib et al, Phys. Rev. D 100, 022002, 2019, 10.1103/PhysRevD.100.022002
Long term experience in Autonomous Stations and production quality control, L. Lopes, A. B. Alves, P. Assis, A. Blanco, N. Carolino, M. A. Cerda, R. Conceição, O. Cunha, C. Dobrigkeit, M. Ferreira, P. Fonte, L. de Almeida, R. Luz, V. B. Martins, L. Mendes, J. C. Nogueira, A. Pereira, M. Pimenta, R. Sarmento, V. de Souza, B. Tomé, J. Instrum. 14 (2019) C07002, 10.1088/1748-0221/14/07/C07002
Numerical modeling of cosmic-ray transport in the heliopshere and interpretation of proton and helium fluxes in Solar Cycle 24, N. Tomassetti, F. Barao, B. Bertucci, E. Fiandrini, M. Orcinha, Advances in Cosmic-Ray Astrophysics and Related Areas, Volume 64, Issue 12, (2019), 10.1016/j.asr.2019.06.025
Transverse extension of partons in the proton probed in the sea-quark range by measuring the DVCS cross section, COMPASS Collaboration (225 authors), Phys.Lett.B 793 (2019) 188-194, 10.1016/j.physletb.2019.04.038
Measurement of the average shape of longitudinal profiles of cosmic ray air-showers at the Pierre Auger Observatory, The Pierre Auger Collaboration, A. Aab et al, J. Cosmol. Astropart. Phys. 3 (2019) 018, 10.1088/1475-7516/2019/03/018
Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons, COMPASS Collaboration (205 authors), Nucl. Phys. B 940 (2019) 34-53, 10.1016/j.nuclphysb.2018.12.024
PICOSEC-Micromegas: Robustness measurements and study of different photocathode materials, M. Gallinaro et al., J.Phys.Conf.Ser. 1312 (2019) no.1, 012012
Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory, B. Aharmim et al. (SNO Collaboration), Phys. Rev. D 99, 032013 (2019), 10.1103/PhysRevD.99.032013
Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission, M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto, IEEE Transactions on Nuclear Science Volume: 66 Issue: 7 ,1770 - 1777, 10.1109/TNS.2019.2900398
Compton polarimetry with a multi-layer CdTe focal plane prototype, M. Moita, E. Caroli, J.M. Maia, R.M. Curado da Silva, N. Auricchio, J.B. Stephen, M. Páscoa, A.M.F. Trindade, Nucl. Instr. Meth. A, Vol. 918, 2019, pp. 93-98, 10.1016/j.nima.2018.10.192
Gravitational wave and collider probes of extended Higgs sectors with a low cutoff, Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP), Eur. Phys. J. C (2019) 79: 156, 10.1140/epjc/s10052-019-6655-1
Search for invisible modes of nucleon decay in water with the SNO+ detector, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 032008 (2019), 10.1103/PhysRevD.99.032008
GUIMesh: a tool to import STEP geometries into Geant4 via GDML, M. Pinto, P. Gonçalves, Computer Physics Communications, Volume 239, June 2019, Pages 150-156,10.1016/j.cpc.2019.01.024
Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 012012 (2019), 10.1103/PhysRevD.99.012012
Measurement of proton induced gamma-ray emission cross sections on Na from 1.0 to 4.1 MeV, M. Chiari, et al., Nucl. Instr. and Meth. in Phys. B 441, 108 (2019), 10.1016/j.nimb.2017.01.043
Properties of the CsI(Tl) detector elements of the CALIFA detector A. Knyazev, et al., Nucl. Instr. and Meth. in Phys. A 940, 393 (2019) 10.1016/j.nima.2019.06.045
Measurement of neutron production in atmospheric neutrino interactions at the Sudbury Neutrino Observatory SNO Collaboration Phys. Rev. D 99, 112007 (2019) 10.1103/PhysRevD.99.112007
Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
Tests of Lorentz invariance at the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Phys. Rev. D 98, 112013 10.1103/PhysRevD.98.112013
Measurement of differential cross sections for Z boson pair production in association with jets at $sqrt{s} =$ 8 and 13 TeV CMS collaboration (2303 authors) Phys.Lett. B789 (2019) 19-44 10.1016/j.physletb.2018.11.007
Correlated long-range mixed-harmonic fluctuations measured in $pp$, $p$+Pb and low-multiplicity Pb+Pb collisions with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B789 (2019) 444-471 10.1016/j.physletb.2018.11.065
Measurements of gluon-gluon fusion and vector-boson fusion Higgs boson production cross-sections in the $H o WW^{ast} o e umu u$ decay channel in $pp$ collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2935 authors) Phys.Lett. B789 (2019) 508-529 10.1016/j.physletb.2018.11.064
Measurement of photon–jet transverse momentum correlations in 5.02 TeV Pb + Pb and $pp$ collisions with ATLAS ATLAS collaboration (2924 authors) Phys.Lett. B789 (2019) 167-190 10.1016/j.physletb.2018.12.023
Search for dark matter particles produced in association with a top quark pair at $sqrt{s} =$ 13 TeV CMS collaboration (2304 authors) Phys.Rev.Lett. 122 (2019) 011803 10.1103/PhysRevLett.122.011803
Search for light resonances decaying to boosted quark pairs and produced in association with a photon or a jet in proton-proton collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2885 authors) Phys.Lett. B788 (2019) 316-335 10.1016/j.physletb.2018.09.062
Seleção de Atributos de Dados Inconsistentes em ambiente HDF5+Python na cloud INCD; João Apolónia, Luís Cavique, Universidade Aberta, DCeT https://repositorioaberto.uab.pt/bitstream/10400.2/8912/1/184-Texto%20Artigo-680-1-10-20191206.pdf
Search for Higgs boson pair production in the $gammagammamathrm{boverline{b}}$ final state in pp collisions at $sqrt{s}=$ 13 TeV CMS collaboration (2285 authors) Phys.Lett. B788 (2019) 7-36 10.1016/j.physletb.2018.10.056
Measurement of differential cross sections for inclusive isolated-photon and photon+jets production in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2299 authors) Eur.Phys.J. C79 (2019) 20 10.1140/epjc/s10052-018-6482-9
Search for heavy charged long-lived particles in proton-proton collisions at $sqrt{s} = 13$ TeV using an ionisation measurement with the mbox{ATLAS} detector ATLAS collaboration (2933 authors) Phys.Lett. B788 (2019) 96-116 10.1016/j.physletb.2018.10.055
Search for low-mass resonances decaying into bottom quark-antiquark pairs in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2292 authors) Phys.Rev. D99 (2019) 012005 10.1103/PhysRevD.99.012005
Search for pair production of Higgs bosons in the $bar{b}bar{b}$ final state using proton-proton collisions at $sqrt{s} = 13$ TeV with the ATLAS detector ATLAS collaboration (2901 authors) JHEP 1901 (2019) 030 10.1007/JHEP01(2019)030
Electroluminescence TPCs at the Thermal Diffusion Limit NEXT collaboration (81 authors) JHEP 1901 (2019) 027 10.1007/JHEP01(2019)027
Search for long-lived particles in final states with displaced dimuon vertices in $pp$ collisions at $sqrt{s}=$ 13 TeV with the ATLAS detector ATLAS collaboration (2920 authors) Phys.Rev. D99 (2019) 012001 10.1103/PhysRevD.99.012001
Search for heavy Majorana or Dirac neutrinos and right-handed $W$ gauge bosons in final states with two charged leptons and two jets at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2924 authors) JHEP 1901 (2019) 016 10.1007/JHEP01(2019)016
Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement, Rodrigues, S, Sinval, J, Queirós, C, Marôco, J, Kaiseler, M., Int J Select Assess. 2019; 27: 152– 168. https://doi.org/10.1111/ijsa.12238

Thesis / Dissertation

PhD Thesis

An efficient particle physics data analysis framework for homogeneous and heterogeneous platforms
Study of ground state properties of halo nuclei via quasi- free scattering reactions at the R3B setup at GSI
Development of a Directionality Detector and Radiation analysis for RADEM, a RADiation hard Electron Monitor for the JUICE mission

Master Thesis

Scintillation detectores for dosimetric monitoring in interventional cardiology
New observables and techniques for the study of jets in hadron collisions
Study of the exclusive production of the top quark in the CMS experiment
Searching for jet quenching in small systems
Topic modelling for jets
Thermal Study of a Module for SWGO (Southern Hemisphere Wide field-of-view Gamma-ray Observatory)
Conception of a Tissue Equivalent Plastic Dosimeter Using Scintillating Fibres for Hadronic Therapy and Space Radiation Effects Studies
Probing the quark gluon plasma medium through B meson production measurements in PbPb collisions at the LHC
The impact of electric field distortion on CP violation studies: study of space charge effects on protoDUNE
Machine Learning in Analytical Chemistry: Applying Innovative Data Analysis Methods Using Chromatographic Techniques
Estudo da resposta dosimétrica de cintiladores plásticos em feixes de protões
Analysis of in-flight data on the AlphaSat radiation Environment Effects Facility
PlaCor: Plataforma para a Computação Orientada ao Recurso
Treino de redes neuronais profundas de forma distribuída
Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.
Santos, C. 2019. Estado atual das populações de berbigão (Cerastoderma spp) no estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências. 64 pp.
Ferreira, M. 2019. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 45 pp.

Conference Paper

SNO+ present results and prospects S. Andringa on behalf of the SNO+ Collaboration Proceedings of BEACH 2018 - XIII International Conference on Beauty, Charm and Hyperon Hadrons, (June 2018, Peniche, Portugal), Conf. Series1137 (2019) 012053 doi:10.1088/1742-6596/1137/1/012053
Unveiling the yoctosecond structure of the QGP with top quarks Liliana Apolinário, Guilherme Milhano, Carlos A. Salgado, Gavin P. Salam Nucl.Phys. A982 (2019) 795-798 10.1016/j.nuclphysa.2018.11.014
Overview of jet quenching and energy loss in heavy-ion collisions Liliana Apolinário PoS LHCP2018 (2018) 219 10.22323/1.321.0219
GERAÇÃO AUTOMÁTICA DE SISTEMAS DE PREVISÃO COSTEIRA: A PLATAFORMA OPENCOASTS André B. FORTUNATO, João ROGEIRO, Joana TEIXEIRA, Anabela OLIVEIRA, Alberto AZEVEDO, Xavier BERTIN, Laura LAVAUD, Mário DAVID, João PINA, Jorge GOMES, Sonia CASTANEDO, Fernando MENDEZ, Pedro LOPES, Marta RODRIGUES André B. FORTUNATO, João ROGEIRO, Joana TEIXEIRA, Anabela OLIVEIRA, Alberto AZEVEDO, Xavier BERTIN, Laura LAVAUD, Mário DAVID, João PINA, Jorge GOMES, Sonia CASTANEDO, Fernando MENDEZ, Pedro LOPES, Marta RODRIGUES; GERAÇÃO AUTOMÁTICA DE SISTEMAS DE PREVISÃO COSTEIRA: A PLATAFORMA OPENCOASTS; IX Congresso sobre Planeamento e Gestão de das Zonas Costeiras, Lisboa 2019
Benchmarking Deep Learning Infrastructures by Means of TensorFlow and Containers, Valentin Kozlov, Isabel Campos, Mário David, Jorge Gomes, Alvaro Lopez Garcia, ISC 2019 Workshops, LNCS 11887
The sub-TeV transient Gamma-Ray sky: challenges and opportunities, G. La Mura, P. Assis, A. Blanco, R. Conceição, P. Fonte, L. Lopes, M. Pimenta, B. Tomé, C. Espírito Santo, L. Mendes, M. Ferreira, P. Abreu, P. Brogueira, L.F. Mendes, F. Barão, U. Barres de Almeida, R. Shellard, U. Giaccari, O. Lippmann, B. D'Ettorre Piazzoli, M. Doro, E. Prandini, C. Perennes, G. Matthiae, M. Tavani, R. Santonico, A. De Angelis, R.L. Coto, A. Chiavassa, J. Vicha, P. Travnicek and G. Di Sciascio, PoS(ICRC2019)721, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
OPENCoastS: on-Demand Forecast Tool for Management, Marta Rodrigues, João Rogeiro, Samuel Bernardo, Anabela Oliveira, André B. Fortunato, Joana Teixeira, Pedro Lopes, Alberto Azevedo, Jorge Gomes, Mário David, João Pina, in Proccedings of the Fourteenth International MEDCOAST Congress on Coastal and Marine Sciences, Engineering Management and Conservation MEDCOAST 2019, 22-26 October 2019, Marmaris, turkey, ISBN: 978-605-69747-0-0
The ATLAS Hardware Track Trigger design towards first prototypes, A. L. Carvarlho on behalf of the ATLAS Collaboration, PoS (LeptonPhoton2019) 166., 10.22323/1.367.0166
Jet Measurements in Heavy Ion Collisions with the ATLAS Experiment, Helena Santos, Proceedings of Science (PoS) ATL-PHYS-PROC-2019-127
Measurements of Higgs boson production using decays to two b-quarks with the ATLAS detector, R. Pedro, ATL-PHYS-PROC-2019-119
First results of the CORSIKA 8 air shower simulation framework, D. Melo, M. Reininghaus, F. Riehn, R. Ulrich, PoS(ICRC2019)399, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
Probing High-Energy Hadronic Interactions with Extensive Air Showers, L. Cazon, PoS(ICRC2019)005, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
Measurement of the fluctuations in the number of muons in inclined air showers with the Pierre Auger Observatory, Felix Riehn for the Pierre Auger Collaboration, PoS(ICRC2019)404, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
The sub-TeV transient Gamma-Ray sky: challenges and opportunities, G. La Mura, P. Assis, A. Blanco, R. Conceição, P. Fonte, L. Lopes, M. Pimenta, B. Tomé, C. Espírito Santo, L. Mendes, M. Ferreira, P. Abreu, P. Brogueira, L.F. Mendes, F. Barão, U. Barres de Almeida, R. Shellard, U. Giaccari, O. Lippmann, B. D'Ettorre Piazzoli, M. Doro, E. Prandini, C. Perennes, G. Matthiae, M. Tavani, R. Santonico, A. De Angelis, R.L. Coto, A. Chiavassa, J. Vicha, P. Travnicek and G. Di Sciascio, PoS(ICRC2019)721, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
Probing the High Energy Spectrum of Neutral Pions in Ultra-high-energy Proton-Air Interactions, L. Cazon, R. Conceição, M. Martins and F. Riehn, PoS(ICRC2019)226, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
Working Group Report on the Combined Analysis of Muon Density Measurements from Eight Air Shower Experiments, Lorenzo Cazon, for the EAS-MSU, IceCube, KASCADE-Grande, NEVOD-DECOR, Pierre Auger, SUGAR, Telescope Array, and Yakutsk EAS Array collaborations, Pos(ICRC2019)214, proceedings of the ICRC2019, in Proceedings of Science https://pos.sissa.it/358
Results on quarkonia production in Heavy Ion collisions from the ATLAS Experiment, Helena Santos (for the ATLAS Collaboration), J PHYS CONF SER 1137 (2019) UNSP 012046, 10.1088/1742-6596/1137/1/012046
Probing the pion spectrum at high-x in proton-Air interactions at ultra-high energies, Lorenzo Cazon, Ruben Conceição, Miguel da Silva Martins, and Felix Riehn, EPJ Web of Conferences 210, 02006 (2019), 10.1051/epjconf/201921002006
Average shape of longitudinal shower profiles measured at the Pierre Auger Observatory, Sofia Andringa and on behalf of the Pierre Auger Collaboration, Proceedings of UHECR2018, EPJ Web of Conferences, Volume 210 (2019), 10.1051/epjconf/201921002015
Measurements and tests of hadronic interactions at ultra-high energies with the Pierre Auger Observatory, Lorenzo Cazon on behalf of the Pierre Auger Collaboration, EPJ Web of Conferences 210, 02002 (2019), 10.1051/epjconf/201921002002
Jets in QCD matter: Monte Carlo approaches, Liliana Apolinário, PoS HardProbes2018 (2019) 022, 10.22323/1.345.0022
The SNO+ Experiment, V. Lozza for the SNO+ Collaboration, Proceedings of the 5th International Solar Neutrino Conference, pp. 313-328 (2019), 10.1142/9789811204296_0019
High-z proton and kaon multiplicity ratios on deuteron target in SIDIS, M. Stolarski on behalf of COMPASS Coll., PoS DIS2019 (2019) 207, 10.22323/1.352.0207
Overview of Heavy Ions from the ATLAS Experiment, Helena Santos, on behalf of the ATLAS Collaboration, Acta Physica Polonica B, Vol. 50 (2019), DOI:10.5506/APhysPolB.50.1217
SNO+ present results and prospects, S. Andringa on behalf of the SNO+ Collaboration, Proceedings of BEACH 2018 - XIII International Conference on Beauty, Charm and Hyperon Hadrons, (June 2018, Peniche, Portugal), Conf. Series1137 (2019) 012053, 10.1088/1742-6596/1137/1/012053
Flavor physics & beyond, a concluding review, N.Leonardo, JPCS 1137 (2019 ) 012060
Recent highlights in top quark and Higgs boson physics from the LHC, R. Gonçalo on behalf of the ATLAS and CMS Collaborations, J. Phys.: Conf. Ser. 1137 011001 (2019); ATL-PHYSPROC-2018-109, in Proceedings of BEACH 2018 XIII International Conference on Beauty, 17 24 June, 10.1088/1742-6596/1137/1/011001
Searches for Higgs bosons with dark matter at the Large Hadron Collider, M. Gallinaro (for the ATLAS and CMS collaborations), PoS CHARGED2018 (2019) 024, https://pos.sissa.it/339/024
Measurements and tests of hadronic interactions at ultra-high energies with the Pierre Auger Observatory, Lorenzo Cazon for the Pierre Auger Collaboration, Proceedings of UHECR2018 held in Paris from 8-12 October 2018
Results on quarkonia production in Heavy Ion collisions from the ATLAS Experiment, Helena Santos (for the ATLAS Collaboration), J PHYS CONF SER 1137 (2019) UNSP 012046, 10.1088/1742-6596/1137/1/012046
Study of scintillating fibers response to low energy protons, D. Guerreiro, L. Peralta, D. Galaviz, J. G. Saraiva, J. M. Sampaio, P. Teubig, 3rd International Conference on Dosimetry and its Applications (ICDA-3)
pMC a fast-low energy proton simulation program, Duarte Gurreiro, Luis Peralta, 3rd International Conference on Dosimetry and its Applications (ICDA-3), Lisboa 27-31 maio 2019
Average shape of longitudinal shower profiles measured at the Pierre Auger Observatory, Sofia Andringa and on behalf of the Pierre Auger Collaboration, Proceedings of UHECR2018, EPJ Web of Conferences, Volume 210 (2019), 10.1051/epjconf/201921002015
Probing the pion spectrum at high-x in proton-Air interactions at ultra-high energies, Lorenzo Cazon, Ruben Conceição, Miguel da Silva Martins, and Felix Riehn, EPJ Web of Conferences 210, 02006 (2019), 10.1051/epjconf/201921002006
Measurements and tests of hadronic interactions at ultra-high energies with the Pierre Auger Observatory, Lorenzo Cazon on hehalf of the Pierre Auger Collaboration, EPJ Web of Conferences 210, 02002 (2019), 10.1051/epjconf/201921002002
Jets in QCD matter: Monte Carlo approaches, Liliana Apolinário, PoS HardProbes2018 (2019) 022, 10.22323/1.345.0022
The SNO+ Experiment, V. Lozza for the SNO+ Collaboration, Proceedings of the 5th International Solar Neutrino Conference, pp. 313-328 (2019), 10.1142/9789811204296_0019
High-z proton and kaon multiplicity ratios on deuteron target in SIDIS, M. Stolarski on behalf of COMPASS Coll., PoS DIS2019 (2019) 207, 10.22323/1.352.0207
Overview of Heavy Ions from the ATLAS Experiment, Helena Santos, on behalf of the ATLAS Collaboration, Acta Physica Polonica B, Vol. 50 (2019), DOI:10.5506/APhysPolB.50.1217
LUMIN: Lumin Unifies Many Improvements for Networks, G. Strong, 10.5281/zenodo.2601857
SNO+ present results and prospects, S. Andringa on behalf of the SNO+ Collaboration, Proceedings of BEACH 2018 - XIII International Conference on Beauty, Charm and Hyperon Hadrons, (June 2018, Peniche, Portugal), Conf. Series1137 (2019) 012053, 10.1088/1742-6596/1137/1/012053
Recent highlights in top quark and Higgs boson physics from the LHC, R. Gonçalo on behalf of the ATLAS and CMS Collaborations, J. Phys.: Conf. Ser. 1137 011001 (2019); ATL-PHYSPROC-2018-109, in Proceedings of BEACH 2018 XIII International Conference on Beauty, 17-24 June, 10.1088/1742-6596/1137/1/011001
Flavor physics & beyond, a concluding review, N.Leonardo, J.Phys.Conf.Ser. 1137 (2019) 012060,
Unveiling the yoctosecond structure of the QGP with top quarks, Liliana Apolinário, Guilherme Milhano, Carlos A. Salgado, Gavin P. Salam, Nucl.Phys. A982 (2019) 795-798, 10.1016/j.nuclphysa.2018.11.014
Overview of jet quenching and energy loss in heavy-ion collisions, Liliana Apolinário, PoS LHCP2018 (2018) 219, 10.22323/1.321.0219
Searches for Higgs bosons with dark matter at the Large Hadron Collider, M. Gallinaro (for the ATLAS and CMS collaborations), PoS CHARGED2018 (2019) 024
Measurements and tests of hadronic interactions at ultra-high energies with the Pierre Auger Observatory, Lorenzo Cazon for the Pierre Auger Collaboration, Proceedings of UHECR2018 held in Paris from 8-12 October 2018

Conference Poster

Rootless Containers with Udocker, Jorge Gomes, Mário David, João Paulo Martins, João Pina, Isabel Campos, Alvaro López Garcia, Pablo Orviz, Valentin Kozlov, ISC 2019 High Performance, Frankfurt Germany, https://ssl.linklings.net/conferences/isc_hpc/assets/2019/posters/proj111.pdf
Backgrounds Analysis for the SNO+ Experiment, Valentina Lozza, TAUP 2019 - Topics in Astroparticle and Undeground Physics

2018

Journal Paper with direct contribution

Llarena, Anna;Katrin, et al. "INNUENDO: a cross sectoral platform for the integration of genomics in the surveillance of food borne pathogens." EFSA Supporting Publications 15.11 (2018): 1498E. https://efsa.onlinelibrary.wiley.com/doi/abs/10.2903/sp.efsa.2018.EN-1498
Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November. Nonintrusive Monitoring of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. Response Time Characterization of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores”, 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
F.J.A.L. Cruz and J.P.B. Mota, “Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores”, 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes”, XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
Rodrigues, S., Sinval, J., Queirós, C., Marôco, J., & Kaiseler, M. (2019). Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment, 27(2), 152–168. https://doi.org/10.1111/ijsa.12238
Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019). Quality of Work Life Scale: Validity evidence from Brazil, and Portugal. Applied Research in Quality of Life. https://doi.org/10.1007/s11482-019-09730-3
haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, ... BioRxiv, 441774
Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
Observation of Fine Time Structures in the Cosmic Proton and Helium Fluxes with the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration Phys. Rev. Lett. 121, 051101
Testing Diffusion of Cosmic Rays in the Heliosphere with Proton and Helium Data from AMS N. Tomassetti, F. Barão, B. Bertucci, E. Fiandrini, J. L. Figueiredo, J. B. Lousada, and M. Orcinha Phys. Rev. Lett. 121, 251104
Search for the standard model Higgs boson produced in association with top quarks and decaying into a b(b)overbar pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration Phys. Rev. D 97 (2018) 072016
Search for flavour-changing neutral current top-quark decays t -> qZ in proton-proton collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 7 (2018) 176
The High Voltage distribution system of the ATLAS Tile Calorimeter and its performance during data taking D. Calvet, S. Calvet, R. Chadelas, D. Cinca, Ph. Grenier, P. Gris, P. Lafarguette, D. Lambert, M. Marjanovi, L. F. Oleiro Seabra, F. M. Pedro Martins, J. B. Pena Madeira Gouveia De Campos, S. M. Romano Saez, P. Rosnet, C. Santoni, L. Valéry, F. Vazeille JINST 13 (2018) P08006
Search for pair production of heavy vector-like quarks decaying into high-(PT) W bosons and top quarks in the lepton-plus-jets final state in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 8 (2018) 048
CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
Observation of Higgs boson production in association with a top quark pair at the LHC with the ATLAS detector ATLAS Collaboration Phys. Lett. B 784 (2018) 173, arXiv:1806.00425 [hep-ex]
Observation of H -> b(b)over-bar decays and V H production with the ATLAS detector ATLAS Collaboration Phys. Lett. B 786 (2018) 59-86
Search for charged Higgs bosons decaying into top and bottom quarks at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration JHEP 1811 (2018) 085
Combination of the Searches for Pair-Produced Vectorlike Partners of the Third-Generation Quarks at root s=13 TeV with the ATLAS Detector ATLAS Collaboration Phys. Rev. Lett. 121 (2018) 211801
Operation and performance of the ATLAS Tile Calorimeter in Run 1 ATLAS collaboration Eur.Phys.J. C78 (2018) 987
Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
MARTA: A high-energy cosmic-ray detector concept with high-accuracy muon measurement P. Abreu, S. Andringa, P. Assis, A. Blanco, V. Barbosa Martins, P. Brogueira, N. Carolino, L. Cazon, M. Cerda, G. Cernicchiaro, R. Colalillo, R. Conceição, O. Cunha, R. M. de Almeida, V. de Souza, F. Diogo, C. Dobrigkeit, J. Espadanal, C. Espirito-Santo, M. Ferreira, P. Ferreira, P. Fonte, U. Giaccari, P. Gonçalves, F. Guarino, O. C. Lippmann, L. Lopes, R. Luz, D. Maurizio, F. Marujo, P. Mazur, L. Mendes, A. Pereira, M. Pimenta, R. R. Prado, J. Rídký, R. Sarmento, C. Scarso, R. Shellard, J. Souza, B. Tomé, Eur. Phys. J. C (2018) 78: 333
The MARTA (Muon Array with RPCs for Tagging Air showers) Front-End acquisition system P. Assis, A. Blanco, P. Brogueira, M. Ferreira and R. Luz IEEE Transactions on Nuclear Science ( Volume: 65 , Issue: 12 , Dec. 2018 )2920 - 2928
Towards a Next Generation of CORSIKA: A Framework for the Simulation of Particle Cascades in Astroparticle Physics Ralph Engel, Dieter Heck, Tim Huege, Tanguy Pierog, Maximilian Reininghaus, Felix Riehn, Ralf Ulrich, Michael Unger, Darko Veberič Comput Softw Big Sci (2019) 3: 2
Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
Observation of proton-tagged, central (semi)exclusive production of high-mass lepton pairs in pp collisions at 13 TeV with the CMS-TOTEM precision proton spectrometer CMS and TOTEM Collaborations J. High Energy Phys. 7 (2018) 153
Charged particle timing at sub-25 picosecond precision: the PICOSEC detection concept M. Gallinaro et al. arXiv:1806.04395
Search for top squarks decaying via four-body or chargino-mediated modes in single-lepton final states in proton-proton collisions at $sqrt{s}$=13~TeV P. Bargassa, C. Beirao et al J. High Energy Phys. 9 (2018) 065
PICOSEC: Charged particle timing at sub-25 picosecond precision with a Micromegas based detector M. Gallinaro et al. Nucl. Instrum. Meth. A 903, 317 (2018)
Deep Diffused APDs for Charged Particle Timing Applications: Performance after Neutron Irradiation M. Gallinaro et al. arXiv:1812.08433
Transverse-momentum-dependent multiplicities of charged hadrons in muon-deuteron deep inelastic scattering COMPASS Collaboration Phys. Rev. D 97, 032006 (2018)
New analysis of eta-pi tensor resonances measured at the COMPASS experiment JPAC and COMPASS Collaborations Physics Letters B 779 (2018) 464–472
Longitudinal double-spin asymmetry A1p and spin dependent structure function g1p of the proton at small values of x and Q2 M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 781 (2018) 464-472
Search for muoproduction of X(3872) at COMPASS and indication of a new state X^~(3872) M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 783 (2018) 334–340
K− over K+ multiplicity ratio for kaons produced in DIS with a large fraction of the virtual-photon energy R. Akhunzyanov et al. (COMPASS Coll.) Physics Letters B 786 (2018) 390–398
Light isovector resonances in π−p → π−π−π+p at 190 GeV/c M. Aghasyan et al. (COMPASS Collab.) Phys. Rev. D 98, 092003 (2018)
Azimuthal asymmetries of charged hadrons produced in high-energy muon scattering off longitudinally polarised deuterons C. Adolph et al (COMPASS Coll.) Eur. Phys. J. C (2018) 78:952
Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons M.G. Alexeev et al (COMPASS Coll.) Nucl. Phys. B 940 (2019) 34–53
Design and expected performance of a novel hybrid detector for very-high-energy gamma astrophysics P. Assis, U. Barres de Almeida, A. Blanco, R. Conceição, B. D'Ettore Piazzoli, A. De Angelis, M. Doro, P. Fonte, L. Lopes, G. Matthiae, M. Pimenta, R. Shellard, B. Tomé Astropart.Phys. 101 (2018) 36-36
Structure of Be-13 studied in proton knockout from B-14 G. Ribeiro, E. Nacher, O. Tengblad, et al. Phys. Rev. C 98, 024603 (2018)
Global constraints on top quark anomalous couplings Frederic Deliot, Ricardo Faria, Miguel C. N. Fiolhais, Pedro Lagarelhos, Antonio Onofre, Christopher M. Pease, Ana Vasconcelos Phys. Rev. D 97 (2018) 013007
Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
Sensitivity of jet substructure to jet-induced medium response José Guilherme Milhano, Urs Achim Wiedemann, Korinna Christine Zapp Phys.Lett. B779 (2018) 409-413
Probing the time structure of the quark-gluon plasma with top quarks Liliana Apolinário, José Guilherme Milhano, Gavin P. Salam, Carlos A. Salgado Phys.Rev.Lett. 120 (2018) no.23, 232301
Novel subjet observables for jet quenching in heavy-ion collisions Liliana Apolinário, José Guilherme Milhano, Mateusz Ploskon, Xiaoming Zhang Eur.Phys.J. C78 (2018) no.6, 529
CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
The fate of quarkonia in heavy-ion collisions at LHC energies: a unified description of the sequential suppression patterns Pietro Faccioli, Carlos Lourenço Eur.Phys.J. C78 (2018) 731
CP in the dark Duarte Azevedo, Pedro M. Ferreira, M. Margarete Muhlleitner, Shruti Patel, Rui Santos, Jonas Wittbrodt J. High Energy Phys. 11 (2018) 091
Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
“Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
“Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
“Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes” F.J.A.L. Cruz and J.P.B. Mota XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) International Journal of Selection and Assessment, 27(2), 152–168.
Quality of Work Life Scale: Validity evidence from Brazil, and Portugal Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) Applied Research in Quality of Life
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, .. BioRxiv, 441774
Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
Nonintrusive Monitoring of Microservice-Based Systems Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
Response Time Characterization of Microservice-Based Systems Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
Near-future changes in storm surges along the Atlantic Iberian coast, Natural Hazards, Fortunato, A.B., Meredith, E.P., Rodrigues, M., Freire, P., Feldmann, H. 2018. https://doi.org/10.1007/s11069-018-3375-z
umd-verification: Automation of Software Validation for the EGI federated e-Infrastructure, Pablo Orviz, Joao Pina, Álvaro López, Isabel Campos, Jorge Gomes, Mario David, J Grid Computing (2018) 16: 683. https://doi.org/10.1007/s10723-018-9454-2
INDIGO-DataCloud: a platform to facilitate seamless access to e-infrastructures, D. Salomoni , I. Campos, L. Gaido, J. Marco de Lucas, P. Solagna, J. Gomes, et al, J Grid Computing (2018) 16: 381. https://doi.org/10.1007/s10723-018-9453-3
Enabling rootless Linux Containers in multi-user environments: the udocker tool, Jorge Gomes, Isabel Campos, Emanuele Bagnaschi, Mario David, Luis Alves, Joao Martins, Joao Pina, Alvaro Lopez-Garcia, Pablo Orviz, Computer Physics Communications, Volume 232, 2018, Pages 84-97, ISSN 0010-4655, DOI: 10.1016/j.cpc.2018.05.021
Running high resolution coastal models in forecast systems: moving from workstations and HPC cluster to cloud resources, João Rogeiro, Marta Rodrigues, Alberto Azevedo, Anabela Oliveira, João Paulo Martins, Mário David, João Pina, Nuno Dias, Jorge Gomes, Advances in Engineering Software, Volume 117, 2018, Pages 70-79, ISSN 0965-9978, DOI: 10.1016/j.advengsoft.2017.04.002
Electrons in GEO measured with the ESA Multi-Functional Spectrometer during the January 2014 SEP, L. Arruda, P. Goncalves, A. Marques, J. Costa-Pinto, A. Aguilar, P. Marinho, T. Sousa, H. Evans, P. Nieminen, IEEE TNS Vol65, Issue 8 pp 1540 - 1545 August 18, DOI: 10.1109/TNS.2018.2854161
Assessment of radiation exposure in manned missions to Mars for three mission profiles, A. L. Casimiro, J. M. Sampaio, P. Gonçalves, M. Pinto, Radiation and Applications Journal (RAD Journal), Volume 3, Issue 1, pp. 27-33, March 2018, DOI: 10.21175/RadJ.2018.01.006
Optimization of the signal-to-background ratio in prompt gamma imaging using energy- and shifting time-of-flight discrimination: experiments with a scanning parallel-slit collimator, P. Cambraia Lopes, P. Crespo, J. Huizenga, D.R. Schaart, IEEE Trans. Radiat. Plasma Med. Sci., vol. 2, pp. 510-9, DOI: 10.1109/TRPMS.2018.2846612
Fast phylogenetic inference from typing data, by J. A. Carriço, M. Crochemore, A. P. Francisco, S. P. Pissis, B. Ribeiro‑Gonçalves and C. Vaz. Algorithms for Molecular Biology, 13:4, 2018, DOI: 10.1186/s13015-017-0119-7
Dynamic phylogenetic inference for sequence-based typing data, by A. P. Francisco, M. Nascimento and C. Vaz. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 604-604, 2017, DOI: 10.1145/3107411.3108214
An approach to evolve and exploit repertoires of general robot behaviours, Jorge Gomes, Sancho Moura Oliveira, Anders Lyhne Christensen, Swarm and Evolutionary Computation, Volume 43, 2018, Pages 265-283, ISSN 2210-6502, https://doi.org/10.1016/j.swevo.2018.06.009.
A biobjective feature selection algorithm for large omics datasets, Cavique, L, Mendes, AB, Martiniano, HFMC, Correia, L., Expert Systems. 2018; 35:e12301. https://doi.org/10.1111/exsy.12301

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Observation of New Properties of Secondary Cosmic Rays Lithium, Beryllium, and Boron by the Alpha Magnetic Spectrometer on the International Space Station M. Aguilar et al. Phys. Rev. Lett. 120 021101
Precision Measurement of Cosmic-Ray Nitrogen and its Primary and Secondary Components with the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration Phys. Rev. Lett. 121, 051103
Observation of Complex Time Structures in the Cosmic-Ray Electron and Positron Fluxes with the Alpha Magnetic Spectro- meter on the International Space Station AMS Collaboration Phys. Rev. Lett. 121, 051102
Measurement of differential cross sections of isolated-photon plus heavy-flavour jet production in pp collisions at root s=8 TeV using the ATLAS detector ATLAS Collaboration (2881 authors) Phys. Lett. B 776 (2018) 295-317
Search for an invisibly decaying Higgs boson or dark matter candidates produced in association with a Z boson in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2896 authors) Phys. Lett. B 776 (2018) 318-337
Search for dark matter produced in association with bottom or top quarks in root s=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (2900 authors) Eur. Phys. J. C 78 (2018) 18
Search for additional heavy neutral Higgs and gauge bosons in the ditau final state produced in 36 fb(-1) of pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2904 authors) J. High Energy Phys. 1 (2018) 055
Search for heavy resonances decaying into WW in the e nu mu nu final state in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2888 authors) Eur. Phys. J. C 78 (2018) 24
Measurement of the cross-section for producing a W boson in association with a single top quark in pp collisions at root s=13 TeV with ATLS ATLAS Collaboration (2861 authors) J. High Energy Phys. 1 (2018) 063
Search for dark matter and other new phenomena in events with an energetic jet and large missing transverse momentum using the ATLAS detector ATLAS Collaboration (2892 authors) J. High Energy Phys. 1 (2018) 126
Search for new phenomena in high-mass final states with a photon and a jet from pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2890 authors) Eur. Phys. J. C 78 (2018) 102
Search for B - L R-parity-violating top squarks in root s=13 TeV pp collisions with the ATLAS experiment ATLAS Collaboration (2894 authors) Phys. Rev. D 97 (2018) 032003
Measurement of the W-boson mass in pp collisions at root s=7 TeV with the ATLAS detector ATLAS Collaboration (2841 authors) Eur. Phys. J. C 78 (2018) 110
ZZ -> l(+)l(-)l '(+)l '(-) cross-section measurements and search for anomalous triple gauge couplings in 13 TeV pp collisions with the ATLAS detector Atlas Collaboration (2879 authors) Phys. Rev. D 97 (2018) 032005
Search for diboson resonances with boson-tagged jets in pp collisions at root S=13 TeV with the ATLAS detector ATLAS Collaboration (2891 authors) Phys. Lett. B 777 (2018) 91-113
Measurement of the exclusive gamma gamma -> mu(+)mu(-) process in proton-proton collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2894 authors) Phys. Lett. B 777 (2018) 303-323
Measurement of long-range multiparticle azimuthal correlations with the subevent cumulant method in pp and p plus Pb collisions with the ATLAS detector at the CERN Large Hadron Collider ATLAS Collaboration / ATLAS Collaboration (2896 authors) Phys. Rev. C 97 (2018) 024904
Direct top-quark decay width measurement in the t(t)over-bar lepton plus jets channel at root s=8 TeV with the ATLAS experiment ATLAS Collaboration (2899 authors) Eur. Phys. J. C 78 (2018) 129
Measurement of longitudinal flow decorrelations in Pb plus Pb collisions at root s(NN)=2.76 and 5.02 TeV with the ATLAS detector ATLAS Collaboration (2902 authors) Eur. Phys. J. C 78 (2018) 142
Search for the direct production of charginos and neutralinos in final states with tau leptons in root s=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (2882 authors) Eur. Phys. J. C 78 (2018) 154
Measurement of tau polarisation in Z/gamma* -> tau tau decays in proton-proton collisions at root s=8 TeV with the ATLAS detector ATLAS Collaboration (2895 authors) Eur. Phys. J. C 78 (2018) 163
Measurement of quarkonium production in proton-lead and proton-proton collisions at 5.02 TeV with the ATLAS detector Atlas Collaboration (2845 authors) Eur. Phys. J. C 78 (2018) 171
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The fate of quarkonia in heavy-ion collisions at LHC energies: a unified description of the sequential suppression patterns Pietro Faccioli, Carlos Lourenço Eur.Phys.J. C78 (2018) 731
CP in the dark Duarte Azevedo, Pedro M. Ferreira, M. Margarete Muhlleitner, Shruti Patel, Rui Santos, Jonas Wittbrodt J. High Energy Phys. 11 (2018) 091
Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010

Thesis / Dissertation

PhD Thesis

Novel Techniques for High Pressure Noble Gas Radiation Detectors link
Demonstração de um dispositivo de imagiologia por raios ortogonais para apoio à radioterapia externa de fotões [link]NA
An Emulation Workbench for Position Sensitive Gaseous Scintillation Detectors [link]NA
Development of new high-performance Positron Emission Mammography based on new photosensor technology [link]NA

Master Thesis

Average lateral distribution function of muons in 10^{17} eV extensive air showers link
Measurement of rare top quark decays in ATLAS/LHC link
Análise da deterioração das características de um protótipo de CdTe para um Telescópio Espacial de Raios Gama em ambiente de radiação orbital link
Effects of Confinement in the Folding of Knotted Proteins link
Studying Elements of Genetic Programming for Multiclass Classification link

Conference Paper

Control System For ATLAS TileCal HVRemote Boards F. Martins, L. Gurriana, L. Seabra, G. Evans, A. Gomes, A. Maio, C. Rato , J. Sabino, J. Soares Augusto C17-10-08 (2018) THPHA069
Jets in heavy ion collisions with the ATLAS detector H.Santos ATL-PHYS-PROC-2018-001
Probing the CP nature of the Higgs coupling in tth events at the LHC Emanuel Gouveia, S. P. Amor dos Santos, M. C. N. Fiolhais, R. Frederix, R. Gonçalo, R. Martins, A. Onofre, C. M. Pease, H. Peixoto, A. Reigoto, R. Santos, J. Silva arXiv:1801.04954
Optics robustness of the ATLAS Tile Calorimeter R. Pedro ATL-TILECAL-PROC-2018-010
Hadronic Interactions at Ultra High Energies – tests with the Pierre Auger Observatory Sofia Andringa, for the Pierre Auger Collaboration Proceedings of the 17th conference on Elastic and Diffractive Scattering, EDS, Blois2017, Prague, Czech Republic, June 2017.
Characterization of irradiated APDs for picosecond time measurements M. Gallinaro et al. J. Instrum. 13 (2018) C01041
Looking forward: exclusive dilepton production with a leading proton M. Gallinaro (for the CMS and TOTEM collaborations) CMS CR-2018/186
Heavy quark probes of QCD N. Leonardo PoS(ICHEP2018)216
Searches for Higgs bosons with dark matter at the Large Hadron Collider M. Gallinaro (for the ATLAS and CMS collaborations) CMS CR-2018/380
Photon-photon and photon-proton measurements with forward proton taggers in CMS+TOTEM J. Hollar, on behalf of the CMS and TOTEM Collaborations CERN Proceedings, [S.l.], v. 1, p. 1, dec. 2018
Final COMPASS results on hadrons, pions and kaons multiplicities in SIDIS Marcin Stolarski on behalf of the COMPASS Coll. PoS DIS2017 (2018) 235
Polarised Drell-Yan results from COMPASS C. Franco on behalf of the COMPASS Coll. arXiv:1804.09516 [hep-ex]
K- over K+ multiplicity ratio for kaons produced in DIS with a large fraction of the virtual-photon energy A.S. Nunes on behalf of the COMPASS Coll. PoS(DIS2018)018
Reactor Antineutrinos in SNO+ S. Nae on behalf of the SNO+ Collaboration published in Proceedings of student poster session of the VII International Pontecorvo Neutrino Physics School (Prague, Czech Republic, August 20 - September 1, 2017), edited by F. Simkovic, - Dubna: JINR, ISBN 978-5-9530-0484-8
Optical Calibration of the SNO+ Detector A.S. Inácio on behalf of the SNO+ Collaboration published in Proceedings of student poster session of the VII International Pontecorvo Neutrino Physics School (Prague, Czech Republic, August 20 - September 1, 2017), edited by F. Simkovic, - Dubna: JINR, ISBN 978-5-9530-0484-8
SNO J. Maneira (on behalf of the SNO Collaboration) Proceedings of the XVII International Workshop on Neutrino Telescopes. March 2017, Venice, Italy
Calibration of the SNO+ Detector with a Light Diffusing Source in the Water Phase A. S. Inácio et. al. on behalf of the SNO+ Collaboration Proceedings of the XXVIII International Conference on Neutrino Physics and Astrophysics
AmBe source calibration in the SNO+ water phase Y. Liu on behalf of the SNO+ Collaboration Proceedings of the XXVIII International Conference on Neutrino Physics and Astrophysics
From SNO to SNO+ and the search for neutrino masses J. Maneira on behalf of the SNO+ Collaboration Published in Livro de Atas da 20.ª Conferência Nacional de Física e 26.º Encontro Ibérico para o Ensino da Física, FÍSICA 2016.
Reactor neutrino oscillations with the SNO+ detector Stefan Nae on behalf of the SNO+ Collaboration Published in Livro de Atas da 20.ª Conferência Nacional de Física e 26.º Encontro Ibérico para o Ensino da Física, FÍSICA 2016.
Measuring oscillations with different neutrino sources S. Andringa Published in Livro de Atas da 20.ª Conferência Nacional de Física e 26.º Encontro Ibérico para o Ensino da Física, FÍSICA 2016.
OPENCoastS.pt – Serviço de previsão em tempo real a pedido para a circulação na ZEE portuguesa A. Azevedo, A.B. Fortunato, J. Teixeira, J. Rogeiro, A. Oliveira, M. Rodrigues, J. Gomes, M. David e J. Pina (2018) Atas das 5as Jornadas de Engenharia Hidrográfica, I.H. (eds), 105-108.
Generation of operational forecasts on demand: the OPENCoastS platform A.B. Fortunato, A. Oliveira, J. Rogeiro, J. Teixeira, A. Azevedo, J. Gomes, M. David, J. Pina 17thIMUM Book of Abstracts
Digital preservation challenges and methodology using Cloud resources - the OPENCoastS case study João Rico, José Barateiro, António Silva, João Rogeiro, Alberto Azevedo, Anabela Oliveira
Previsão em tempo real a pedido na costa portuguesa - O serviço opencoasts.pt e sua demonstração na circulação da Ria Formosa Teixeira, J., Fortunato, A. B., Rogeiro, J., Azevedo, A., Rodrigues, M., Oliveira, A. (2018) Atas do 14º Congresso da água -Gestão dos Recursos Hidricos:Novos Desafios, 16 pp.
High-performance computing applied to numerical models in UBEST. Martins, R., Rogeiro, J., Rodrigues, M., Fortunato, A.B., Oliveira, A., Azevedo, A. (2018) Scientific Challenges & Business Opportunities in Water Management (SciBOWater).
The SNO+ Experiment, V. Lozza on behalf of the SNO+ Collaboration, Proceedings of the 5th International Solar Neutrino Conference, June 2018, Dresden, Germany
Using Spark and GraphX to parallelize large-scale simulations of bacterial populations over host contact networks, by A. S. Teixeira, P. T. Monteiro, J. A. Carriço, F. C. Santos and A. P. Francisco. In Algorithms and Architectures for Parallel Processing: 17th International Conference, ICA3PP 2017, 591-600, 2017, DOI: 10.1007/978-3-319-65482-9_44
Gomes J., Christensen A.L. (2018) Task-Agnostic Evolution of Diverse Repertoires of Swarm Behaviours. In: Dorigo M., Birattari M., Blum C., Christensen A., Reina A., Trianni V. (eds) Swarm Intelligence. ANTS 2018. Lecture Notes in Computer Science, vol 11172. Springer, Cham, doi: 10.1007/978-3-030-00533-7_18
J. Gomes and A. L. Christensen, "Comparing Approaches for Evolving High-Level Robot Control Based on Behaviour Repertoires," 2018 IEEE Congress on Evolutionary Computation (CEC), Rio de Janeiro, 2018, pp. 1-6. doi: 10.1109/CEC.2018.8477699

Conference Poster

Average shape of longitudinal shower profiles measured at the Pierre Auger Observatory, Sofia Andringa, UHECR 2018, Ecole Supérieure de Chimie, Paris, France
Calibration of the SNO+ Detector with a Light Diffusing Source in the Water Phase, A. S. Inácio et. al. on behalf of the SNO+ Collaboration, Neutrino 2018 - XXVIII International Conference on Neutrino Physics and Astrophysics, Heidelberg, Germany
Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission, Marco Alves Pinto, RADECS 2018, Gotemburg, Sweden
Precision Measurement of the Monthly Cosmic Ray Fluxes with the Alpha Magnetic Spectrometer on the ISS, Miguel Orcinha (on behalf of the AMS collaboration), 26th Extended European Cosmic Ray Symposium and 35th Russian Cosmic Ray Conference, Barnaul - Belokurikha - Altai Mountains, Russia
Recent developments in deep-learning applied to open HEP data, Giles Strong, Advanced Statistics for Physics Discovery, Padova University, italy
Search for flavour-changing neutral currents tZ interactions in proton-proton collisions at sqrt(s) = 13 TeV collected with the ATLAS detector, Ana Peixoto, 11th International Workshop on Top Quark Physics, Bad Neuenahr, Germany
Search for new interaction at the top quark section, Ana Peixoto, 1st IGFAE/LIP Workshop, Braga, Portugal
Search for vector-like quarks decaying to a Z boson with the ATLAS experiment, Tiago Vale, 11th International Workshop on Top Quark Physics, Bad Neuenahr, Germany
Triggering on hadronic signatures in the ATLAS experiment - Developments for 2017 and 2018, Emanuel Gouveia, 23rd International Conference on Computing in High Energy and Nuclear Physics, Sofia - Bulgaria
Development of a framework for Multi-Messenger Observations with the Auger Observatory, Sofia Andringa, Lorenzo Cazon, Bernardo Dias, Nelson Eiró, XXVIII Encontro Nacional de Astronomia e Astrofísica, Observatório Geofísico e Astronómico da Universidade de Coimbra
Search for heavy fermions with the ATLAS experiment, Tiago Vale, 4th IDPASC Workshop, Coimbra, Portugal
Search for tZ production via Flavour Changing Neutral Currents with the ATLAS Experiment at 13 TeV, Ana Peixoto, 4th IDPASC Workshop, Coimbra, Portugal

2017

Journal Paper with direct contribution

Quarkonium production at the LHC: A data-driven analysis of remarkably simple experimental patterns P. Faccioli, C. Lourenço, M. Araújo, V. Knünz, I. Krätschmer, J. Seixas Phys.Lett. B773 (2017) 476-486 10.1016/j.physletb.2017.09.006
Evaluation of Type-1 Hypervisors on Desktop-class Virtualization Hosts Duarte Pousa, José Rufino IADIS International Journal on Computer Science and Information Systems (ISSN 1646-3692), vol. 12, num. 2, pp. 86-101
Evidence for the H to bb decay with the ATLAS detector ATLAS Collaboration (2856 authors) JHEP 12 (2017) 024 10.1007/JHEP12(2017)024
3D Modeling of Electric Fields in the LUX Detector D.S. Akerib et al. JINST 12 P11022 (2017) 10.1088/1748-0221/12/11/P11022
Measurement of jet p(T) correlations in Pb+Pb and pp collisions at root s(NN)=2.76 TeV with the ATLAS detector ATLAS Collaboration (2835 authors) Phys. Lett. B 774 (2017) 379-402 10.1016/j.physletb.2017.09.078
Evidence for a Time Lag in Solar Modulation of Galactic Cosmic Rays Nicola Tomassetti, Miguel Orcinha, Fernando Barão, and Bruna Bertucci 2017 ApJL 849 L32 10.3847/2041-8213/aa9373
Evidence for a Time Lag in Solar Modulation of Galactic Cosmic Rays Nicola Tomassetti, Miguel Orcinha, Fernando Barão, and Bruna Bertucci 2017 ApJL 849 L32 10.3847/2041-8213/aa9373
Enabling rootless Linux Containers in multi-user environments: the udocker tool Jorge Gomes, Isabel Campos, Emanuele Bagnaschi, Mario David, Luis Alves, Joao Martins, Joao Pina, Alvaro Lopez-Garcia, Pablo Orviz Enabling rootless Linux Containers in multi-user environments: the udocker tool Jorge Gomes, Isabel Campos, Emanuele Bagnaschi, Mario David, Luis Alves, Joao Martins, Joao Pina, Alvaro Lopez-Garcia, Pablo Orviz. Nov 6, 2017. e-Print: arXiv:1711.01758 [cs.SE]
INDIGO-DataCloud:A data and computing platform to facilitate seamless access to e-infrastructures D. Salomoni, I. Campos, L. Gaido, G. Donvito, P. Fuhrman, J. Marco, A. Lopez-Garcia, P. Orviz, I. Blanquer, G. Molto, M. Plociennik, M. Owsiak, M. Urbaniak, M. Hardt, A. Ceccanti, B. Wegh, J. Gomes, M. David, L. Alves, J. Pina, J. Martins, C. Aiftimiei, L. Dutka, S. Fiore, G. Aloisio, R. Barbera, R. Bruno, M. Fargetta, E. Giorgio, D. Spiga, S. Reynaud, L. Schwarz, T. Bell, R. Rocha, M. Viljoen arXiv:1711.01981 10.1007/s10723-018-9453-3
Jet energy loss and equilibration Korinna C. Zapp Nucl.Phys. A967 (2017) 81-88 10.1016/j.nuclphysa.2017.06.018
Physics with ions at the Future Circular Collider David d'Enterria, L. Apolinario, N. Armesto, A. Dainese, J. Jowett, J.P. Lansberg, S. Masciocchi, G. Milhano, C. Roland, C.A. Salgado, M. Schaumann, M. van Leeuwen, U.A. Wiedemann Nucl.Phys. A967 (2017) 888-891 10.1016/j.nuclphysa.2017.06.029
Pseudoscalar couplings in t(t)over-barH production at NLO plus NLL accuracy Alessandro Broggio, Andrea Ferroglia, Miguel C. N. Fiolhais, Antonio Onofre Phys. Rev. D 96 (2017) 073005 10.1103/PhysRevD.96.073005
Experimental ion mobility measurements in Xe-C2H6 Perdigoto, JMC; Cortez, AFV; Veenhof, R ; Neves, PNB; Santos, FP; Borges, FIGM; Conde, CAN JOURNAL OF INSTRUMENTATION Volume: 12 Article Number: P10011 DOI: 10.1088/1748-0221/12/10/P10011 Published: OCT 2017 10.1088/1748-0221/12/10/P10011
First Measurement of Transverse-Spin-Dependent Azimuthal Asymmetries in the Drell-Yan Process M. Aghasyan et al. (219 authors) Phys. Rev. Lett. 119 (2017) 112002 10.1103/PhysRevLett.119.112002
An environmental dose experiment Luis Peralta European Journal of Physics,38 ( 2017) 065801 10.1088/1361-6404/aa7d1a
Monitoring tumor lung irradiation with megavoltage patient-scattered radiation: A full system simulation study H. Simões, A.L. Lopes, C. Travassos, P. Crespo, M. Alves Barros, J. Lencart, P.J.B.M. Rachinhas IEEE Trans. Radiat. Plasma Med. Sci. 1:5 (2017) 452-459 10.1109/ TRPMS.2017.2724139
Experimental ion mobility measurements in Xe-CH4 Perdigoto, JMC (Perdigoto, J. M. C.); Cortez, AFV (Cortez, A. F. V.); Veenhof, R (Veenhof, R.); Neves, PNB (Neves, P. N. B.); Santos, FP (Santos, F. P.); Borges, FIGM (Borges, F. I. G. M.); Conde, CAN (Conde, C. A. N.) JOURNAL OF INSTRUMENTATION Volume: 12 Article Number: P09003 DOI: 10.1088/1748-0221/12/09/P09003 Published: SEP 2017 10.1088/1748-0221/12/09/P09003
Factorization of in-medium parton branching beyond the eikonal approximation Liliana Apolinário, Néstor Armesto, José Guilherme Milhano, Carlos A. Salgado Nucl.Part.Phys.Proc. 289-290 (2017) 117-120 10.1016/j.nuclphysbps.2017.05.023
The angular structure of jet quenching within a hybrid strong/weak coupling model Jorge Casalderrey-Solana, Doga Can Gulhan, José Guilherme Milhano, Daniel Pablos, Krishna Rajagopal Nucl.Part.Phys.Proc. 289-290 (2017) 359-362 10.1016/j.nuclphysbps.2017.05.083
Medium Recoils and background subtraction in JEWEL Raghav Kunnawalkam Elayavalli, Korinna Christine Zapp Nucl.Part.Phys.Proc. 289-290 (2017) 368-371 10.1016/j.nuclphysbps.2017.05.085
SEP Protons in GEO measured with the ESA MultiFunctional Spectrometer Luisa Arruda, Patrícia Gonçalves, Ingmar Sandberg, Sigiava Giamini, Ioannis Daglis, Arlindo Marques, Joao Pinto, Adolfo Aguilar, Pedro Marinho, Tiago Sousa, Hugh Evans, Piers Jiggens, Alessandra Menicucci, Petteri Nieminen IEEE Trans. Nucl. Sci. 64 (2017) 2333-2339 10.1109/TNS.2017.2714461
Medium response in JEWEL and its impact on jet shape observables in heavy ion collisions Raghav Kunnawalkam Elayavalli, Korinna Christine Zapp JHEP 1707 (2017) 141 10.1007/JHEP07(2017)141
First measurement of the Sivers asymmetry for gluons using SIDIS data COMPASS Collaboration (228 authors) Phys. Lett. B 772 (2017) 854-864 10.1016/j.physletb.2017.07.018
Probing the CP nature of the Higgs coupling in tth events at the LHC S. Amor dos Santos et al. (12 authors) Phys. Rev. D 96 (2017) 013004 10.1103/PhysRevD.96.013004
Sivers asymmetry extracted in SIDIS at the hard scales of the Drell-Yan process at COMPASS C. Adolph et al. (225 authors) Phys. Lett. B 770 (2017) 138-145 10.1016/j.physletb.2017.04.042
LATTES: a new gamma-ray detector concept for South America P. Assis, U. Barres de Almeida, A. Blanco, R. Conceição, B. D'Ettoree Piazzoli, A. de Angelis, M. Doro, P. Fonte, L. Lopes, G. Matthiae, M. Pimenta, R. Shellard, B. Tomé EPJ WEB CONF 136 (2017) UNSP 03013 10.1051/epjconf/e2016-62145-8, 10.1051/epjconf/201713603013
Patient Compton scattered radiation for monitoring prostate radiotherapy with gold fiducial markers: A simulation study A.L. Lopes, H. Simões, C. Travassos, P. Crespo Int. J. Pharma Med. Biol. Sci. 6:3 (2017) 77-82 10.18178/ijpmbs.6.3.77-82
Experimental studies on ion mobility in xenon-trimethylamine mixtures Trindade, AMF (Trindade, A. M. F.); Encarnacao, PMCC (Encarnacao, P. M. C. C.); Escada, J (Escada, J.); Cortez, AFV (Cortez, A. F. V.); Neves, PNB (Neves, P. N. B.); Conde, CAN (Conde, C. A. N.); Borges, FIGM (Borges, F. I. G. M.); Santos, FP (Santos, F. P.) JOURNAL OF INSTRUMENTATION Volume: 12 Article Number: P07007 DOI: 10.1088/1748-0221/12/07/P07007 Published: JUL 2017 10.1088/1748-0221/12/07/P07007
Limits on spin-dependent WIMP-nucleon cross section obtained from the complete LUX exposure D. S. Akerib et al. Phys. Rev. Lett. 118, 251302 (2017) 10.1103/PhysRevLett.118.251302
Heavy ions at the Future Circular Collider A. Dainese et al. CERN Yellow Report (2017) 635-692 10.23731/CYRM-2017-003.635
Final COMPASS results on the deuteron spin-dependent structure function g(1)(d) and the Bjorken sum rule C. Adolph et al. (228 authors) Phys. Lett. B 769 (2017) 34-41 10.1016/j.physletb.2017.03.018
Experimental ion mobility measurements in Xe-CO2 Cortez, AFV (Cortez, A. F. V.); Santos, MAG (Santos, M. A. G.); Veenhof, R (Veenhof, R.); Patra, RN (Patra, R. N.); Neves, PNB (Neves, P. N. B.); Santos, FP (Santos, F. P.); Borges, FIGM (Borges, F. I. G. M.); Conde, CAN (Conde, C. A. N.) JOURNAL OF INSTRUMENTATION Volume: 12 Article Number: P06012 DOI: 10.1088/1748-0221/12/06/P06012 Published: JUN 2017 10.1088/1748-0221/12/06/P06012
LATTES: A new gamma-ray detector concept for South America P. Assis et al. (13 authors) Nuovo Cim. C-Colloq. Commun. Phys. 40 (2017) 116 10.1393/ncc/i2017-17116-4
Measurement of B+ production cross section at 13 TeV CMS Collaboration Physics Letters B 771 (2017) 435–456
Performance of the ATLAS Trigger System in 2015 ATLAS Collaboration (2856 authors) Eur. Phys. J. C 77 (2017) 317. 10.1140/epjc/s10052-017-4852-3
Measurement of the W polarization in tt events from pp collisions at sqrt(s)=8 TeV in the lepton+jets channel with ATLAS ATLAS collaboration (2850 authors) Eur.Phys.J. C79 (2019) 19, Eur. Phys. J. C 77 (2017) 4 264. 10.1140/epjc/s10052-017-4819-4, 10.1140/epjc/s10052-018-6520-7
Multiplicities of charged kaons from deep-inelastic muon scattering off an isoscalar target C. Adolph et al. (227 authors) Phys. Lett. B 767 (2017) 133-141 10.1016/j.physletb.2017.01.053
Iterative reconstruction of SiPM light response functions in a square-shaped compact gamma camera A. Morozov, F. Alves, J. Marcos, R. Martins, L. Pereira, V. Solovov, V. Chepel Phys. Med. Biol. 62 (2017) 3619-3638 10.1088/1361-6560/aa6029
Leading-order determination of the gluon polarisation from semi-inclusive deep inelastic scattering data COMPASS Collaboration (221 authors) Eur. Phys. J. C 77 (2017) 209 10.1140/epjc/s10052-017-4716-x
Angular Structure of Jet Quenching Within a Hybrid Strong/Weak Coupling Model Jorge Casalderrey-Solana, Doga Gulhan, Guilherme Milhano, Daniel Pablos, Krishna Rajagopal JHEP 1703 (2017) 135 10.1007/JHEP03(2017)135
Measurements of top quark spin observables in tt events using dilepton final states in sqrt(s) = 8 TeV pp collisions with the ATLAS detector ATLAS Collaboration (2873 authors) JHEP 03 (2017) 113 10.1007/JHEP03(2017)113
Resonance production and pi pi S-wave in pi(-) + p -> pi(-) pi(-) pi(+) + p(recoil) at 190 GeV/c COMPASS Collaboration (210 authors) Phys. Rev. D 95 (2017) 032004 10.1103/PhysRevD.95.032004
In-medium parton branching beyond eikonal approximation Liliana Apolinário Few Body Syst. 58 (2017) 69 10.1007/s00601-017-1236-z
Exclusive omega meson muoproduction on transversely polarised protons C. Adolph et al. (228 authors) Nucl. Phys. B 915 (2017) 454-475 10.1016/j.nuclphysb.2016.12.015
Measurement of the absolute reflectance of polytetrafluoroethylene (PTFE) immersed in liquid xenon F. Neves, A. Lindote, A. Morozov, V. Solovov, C. Silva, P. Bras, J.P. Rodrigues and M.I. Lopes Journal of instrumentation, Vol.12 P01017 10.1088/1748-0221/12/01/P01017
A novel portable energy dispersive X-ray fluorescence spectrometer with triaxial geometry Pessanha, S. and Alves, M. and Sampaio, J.M. and Santos, J.P. and Carvalho, M.L. and Guerra, M. 10.1088/1748-0221/12/01/P01014
A measurement of the calorimeter response to single hadrons and determination of the jet energy scale uncertainty using LHC Run-1 $pp$-collision data with the ATLAS detector ATLAS Collaboration (2852 authors) Eur. Phys. J. C 77 (2017) 26 10.1140/epjc/s10052-016-4580-0
Results from a search for dark matter in the complete LUX exposure D. S. Akerib et al. Phys. Rev. Lett. 118, 021303 10.1103/PhysRevLett.118.021303
Multiplicities of charged pions and charged hadrons from deep-inelastic scattering of muons off an isoscalar target C. Adolph et al. (233 authors) Phys. Lett. B 764 (2017) 1-10 10.1016/j.physletb.2016.09.042
Recent progress on the understanding of the medium-induced jet evolution and energy loss in pQCD Liliana Apolinário EPJ Web Conf. 137 (2017) 07002 10.1051/epjconf/201713707002
Sensitivity of EAS measurements to the energy spectrum of muons J. Espadanal, L. Cazon, R. Conceição Astroparticle Physics 86 (2017) 32–40 10.1016/j.astropartphys.2016.11.003
Radon concentration assessment in water sources of public drinking of Covilhã ́s county, Portugal Margarida Inácio, Sandra Soares, Pedro Almeida Journal of Radiation Research and Applied Sciences, Volume 10, Number 2, 2017, 135-139 (5) 10.1016/j.jrras.2017.02.002

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Gauge-Independent Renormalization of the N2HDM Marcel Krause, David Lopez-Val, Margarete Muhlleitner, Rui Santos J. High Energ. Phys. (2017) 2017: 77 10.1007/JHEP12(2017)077
Search for supersymmetry in events with at least one photon, missing transverse momentum, and large transverse event activity in proton-proton collisions at root s=13TeV CMS collaboration (2231 authors) J. High Energy Phys. 12 (2017) 142 10.1007/JHEP12(2017)142
Femtoscopy with identified charged pions in proton-lead collisions at root s(NN)=5.02 TeV with ATLAS ATLAS Collaboration (2847 authors) Phys. Rev. C 96 (2017) 064908 10.1103/PhysRevC.96.064908
Ultralow energy calibration of LUX detector using Xe-127 electron capture D. S. Akerib et al. (94 authors) Phys. Rev. D 96 (2017) 112011 10.1103/PhysRevD.96.112011
Search for squarks and gluinos in events with an isolated lepton, jets, and missing transverse momentum at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2875 authors) Phys. Rev. D 96 (2017) 112010 10.1103/PhysRevD.96.112010
Kr-83m calibration of the 2013 LUX dark matter search LUX Collaboration (93 authors) Phys. Rev. D 96 (2017) 112009 10.1103/PhysRevD.96.112009
Laboratory and beam test results of TOFFEE ASIC and ultra fast silicon detectors Roberta Arcidiacono, Nicolo Cartiglia, Francesca Cenna, Manuel Dionisio Da Rocha Rolo, Agostino Di Francesco, Federico Fausti, Marco Mignone, Elias Olave, Jose Carlos Rastreiro Da Silva, Angelo Rivetti, Rui Silva, Joao Varela PoS TWEPP-17 (2017) 028 10.22323/1.313.0028
Search for direct top squark pair production in final states with two leptons in root s=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (2876 authors) Eur. Phys. J. C 77 (2017) 898 10.1140/epjc/s10052-017-5445-x
Search for lepton flavour violating decays of the Higgs boson to $mu au$ and e$ au$ in proton-proton collisions at $sqrt{s}=$ 13 TeV CMS collaboration (2270 authors) JHEP 1806 (2018) 001 10.1007/JHEP06(2018)001
Observation of the Identical Rigidity Dependence of He, C, and O Cosmic Rays at High Rigidities by the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration (257 authors) Phys. Rev. Lett. 119 (2017) 251101 10.1103/PhysRevLett.119.251101
Observation of the Identical Rigidity Dependence of He, C, and O Cosmic Rays at High Rigidities by the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration (257 authors) Phys. Rev. Lett. 119 (2017) 251101 10.1103/PhysRevLett.119.251101
Determination of the strong coupling constant alpha(s) from transverse energy-energy correlations in multijet events at root s=8 TeV using the ATLAS detector ATLAS Collaboration (2874 authors) Eur. Phys. J. C 77 (2017) 872 10.1140/epjc/s10052-017-5442-0
Search for a scalar partner of the top quark in the jets plus missing transverse momentum final state at root s=13 TeV with the ATLAS detector Atlas Collaboration (2864 authors) J. High Energy Phys. 12 (2017) 085 10.1007/JHEP12(2017)085
Observation of Top Quark Production in Proton-Nucleus Collisions CMS Collaboration (2249 authors) Phys. Rev. Lett. 119 (2017) 242001 10.1103/PhysRevLett.119.242001
Measurement of the Drell-Yan triple-differential cross section in pp collisions at root s=8 TeV ATLAS Collaboration (2891 authors) J. High Energy Phys. 12 (2017) 059 10.1007/JHEP12(2017)059
Constraints on anomalous Higgs boson couplings using production and decay information in the four-lepton final state A. M. Sirunyan et al. (2230 authors) Phys. Lett. B 775 (2017) 1-24 10.1016/j.physletb.2017.10.021
Search for new phenomena in high-mass diphoton final states using 37 fb(-1) of proton-proton collisions collected at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2894 authors) Phys. Lett. B 775 (2017) 105-125 10.1016/j.physletb.2017.10.039
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Signal yields, energy resolution, and recombination fluctuations in liquid xenon D.S. Akerib et al. Physical Review D 95, 012008 10.1103/PhysRevD.95.012008
Search for high-mass Z gamma resonances in e(+)e(-)gamma and mu(+)mu(-)gamma final states in proton-proton collisions at root s=8 and 13 TeV CMS Collaboration (2269 authors) J. High Energy Phys. 1 (2017) 076 10.1007/JHEP01(2017)076
Search for Dark Matter and Supersymmetry with a Compressed Mass Spectrum in the Vector Boson Fusion Topology in Proton-Proton Collisions at root s=8 TeV CMS Collaboration (2261 authors) Phys. Rev. Lett. 118 (2017) 021802 10.1103/PhysRevLett.118.021802
Search for heavy resonances decaying to a Z boson and a photon in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2863 authors) Phys. Lett. B 764 (2017) 11-30 10.1016/j.physletb.2016.11.005
Observation of the decay B+ -> psi(2S)phi(1020)K+ in pp collisions at root s=8 TeV CMS Collaboration (2267 authors) Phys. Lett. B 764 (2017) 66-86 10.1016/j.physletb.2016.11.001
Measurements of the t(t)over-bar production cross section in lepton plus jets final states in pp collisions at 8 and ratio of 8 to 7 cross sections CMS Collaboration (2309 authors) Eur. Phys. J. C 77 (2017) 1-27 10.1140/epjc/s10052-016-4504-z
Inclusive search for supersymmetry using razor variables in pp collisions at root s=13 TeV CMS Collaboration (2263 authors) Phys. Rev. D 95 (2017) 012003 10.1103/PhysRevD.95.012003
Background rejection in NEXT using deep neural networks The NEXT Collaboration JOURNAL OF INSTRUMENTATION Volume: 12 Article Number: T01004 DOI: 10.1088/1748-0221/12/01/T01004 Published: JAN 2017 10.1088/1748-0221/12/01/T01004
The CMS trigger system CMS Collaboration (2311 authors) J. Instrum. 12 (2017) P010120 10.1088/1748-0221/12/01/P01020

Thesis / Dissertation (*)

Phd Thesis

(*) Ended in 2017

Development of a new PET detector for pancreatic and prostate cancer detection link
Spin Structure of the Proton at Low x and Low Q2 from the COMPASS Experiment at CERN link
Search for the Higgs boson at ATLAS/LHC in WH associated production and decay to b quark pairs using MVA methods link
Demonstration of a time-of-flight device for particle therapy monitoring link
Study of ground state properties of the halo nucleus 11Be via scattering on a proton target at quasi-free scattering conditions performed at the R3B setup at GSI link
Search for the Higgs boson at ATLAS/LHC, in associated production with a Z boson link
Search for flavour-changing neutral current top-quark decays with the ATLAS detector link
Measurement of the longitudinal profile of cosmic ray air-showers at the Pierre Auger Observatory link

Master Thesis

Response of a water-Cherenkov detector to inclined muons at the Pierre Auger Observatory link
Probing hadronic interactions at ultra-high energies link
Development and Radiation Hardness Assessment of MR sensors for Space Applications link
Análise de Biometais em Tecido Cerebral por Microscopia Eletrónica Analíticalink
Optical calibration of the SNO+ experiment and sensitivity studies for neutrino-less double beta decay link
Probing the CP nature of the Higgs couplings in ttH events at the LHC link
Development of a control board for the HV distribution system link
Optimization of clustering algorithms for the ATLAS Experiment at the LHC (CERN)link
Detector Control System of the HV distribution boards for the ATLAS Tile Calorimeter Phase II Upgradelink
Aprendizagem profunda: estudo e aplicações link

Conference Paper

Quarkonium polarization in pp collisions with CMS J.Seixas, CMS Collaboration QCD@LHC 2016
A data-driven interpretation of heavy quarkonium measurements at the LHC P.Faccioli QCD@LHC 2016
The SNO+ experiment physics goals and background mitigations G. Prior (on behalf of the SNO+ collaboration) NuPhys2016 Conference Proceedings – SLAC eConf C16-12-12.1 (2017)
Multi-Threaded Algorithms for GPGPU in the ATLAS High Level Trigger P. Conde Muíño, on behalf of the ATLAS Collaboration J.Phys.Conf.Ser. 898 (2017) no.3, 032003 10.1088/1742-6596/898/3/032003
Computing shifts to monitor ATLAS distributed computing infrastructure and operations C. Adam, D. Barberis, S. Crépé-Renaudin, K. De, F. Fassi, A. Stradling, M. Svatos, A. Vartapetian and H. Wolters IOP Conf. Series: Journal of Physics: Conf. Series 1829384(526071879)092004 10.1088/1742-6596/898/9/092004
Latest Results on Top Quark Properties: Deciphering the DNA of the heaviest quark M. Gallinaro (for the CMS Collaboration) arXiv:1711.10425
Experiences on Object Tracking Using a Many-Core Embedded System Laercio Minozzo, José Rufino, José Lima Proceedings of the 14th International Conference on Applied Computing (AC 2017), pp. 195-204, IADIS. 18-20 October, 2017. Vilamoura, Portugal
Benchmarking of Bare Metal Virtualization Platforms on Commodity Hardware Duarte Pousa, José Rufino Proceedings of the 14th International Conference on Applied Computing (AC 2017), pp. 205- 212, IADIS. 18-20 October, 2017. Vilamoura, Portugal. (best paper award)
Recent progress on the understanding of the medium-induced jet evolution and energy loss in pQCD Liliana Apolinário EPJ Web Conf. 137 (2017) 07002 10.1051/epjconf/201713707002
Recent progress on the understanding of the medium-induced jet evolution and energy loss in pQCD Liliana Apolinário EPJ Web Conf. 137 (2017) 07002 10.1051/epjconf/201713707002
Detector Control System for the AFP detector in ATLAS experiment at CERN E. Banaś, D. Caforio, S. Czekierda, Z. Hajduk, J. Olszowska, L. Seabra and P. Sícho J.Phys.Conf.Ser. 898 (2017) no.3, 032022 10.1088/1742-6596/898/3/032022
Dosimetry of kV Cone Beam CT with scintillation dosimeter Luis Peralta, Joana Machado, Esmeralda Poli PRS2017- Proteção Radiológica na Saúde, 27 a 29 de Setembro, IST, Lisboa
Calibration of the SNO+ experiment J. Maneira, E. Falk, E. Leming, S. Peeters on behalf of the SNO+ Collaboration J. Phys.: Conf. Ser. 888 012247 10.1088/1742-6596/888/1/012247
LATTES: a novel detector concept for a gamma-ray experiment in the Southern hemisphere R. Conceição, P. Assis, U. Barres de Almeida, A. Blanco, B. D’Ettore Piazoli, A. De Angelis, M. Doro, P. Fonte, L. Lopes, G. Matthiae, M. Pimenta, R. Shellard, B. Tomé PoS ICRC2017 784 - Proceedings of the 35th International Cosmic Ray Conference (ICRC2017) 10.22323/1.301.0784
Autonomous RPCs for a Cosmic Ray ground array Pedro Assis, Alberto Blanco, Nuno Carolino, Ruben Conceição, Orlando Cunha, Carola Dobrigkeit, Miguel Ferreira, Paulo Fonte, Luis Lopes, Ricardo Luz, Victor Barbosa Martins, Luis Mendes, Américo Pereira, Mário Pimenta, Raul Sarmento, Ronald Shellard, Vitor de Souza, Bernardo Tomé PoS ICRC2017 (2018) 379 10.22323/1.301.0379
Autonomous RPCs for a Cosmic Ray ground array Pedro Assis, Alberto Blanco, Nuno Carolino, Ruben Conceição, Orlando Cunha, Carola Dobrigkeit, Miguel Ferreira, Paulo Fonte, Luis Lopes, Ricardo Luz, Victor Barbosa Martins, Luis Mendes, Américo Pereira, Mário Pimenta, Raul Sarmento, Ronald Shellard, Vitor de Souza, Bernardo Tomé PoS ICRC2017 (2018) 379 10.22323/1.301.0379
Autonomous RPCs for a Cosmic Ray ground array Pedro Assis, Alberto Blanco, Nuno Carolino, Ruben Conceição, Orlando Cunha, Carola Dobrigkeit, Miguel Ferreira, Paulo Fonte, Luis Lopes, Ricardo Luz, Victor Barbosa Martins, Luis Mendes, Américo Pereira, Mário Pimenta, Raul Sarmento, Ronald Shellard, Vitor de Souza, Bernardo Tomé PoS ICRC2017 (2018) 379 10.22323/1.301.0379
Analysis of radiation from radon on bioactive compounds present on Nasturtium officinale Leaves M. Inácio, S. Soares, E. Amaral 13th Workshop on European Collaboration for Higher education and Research in Radiological and Nuclear Engineering and Radiation Protection,Covilhã - Portugal 24-29 May 2017
From Particle Physics to Civil Engineering for a better health P. Almeida, S. Soares, M. Inácio 13th Workshop on European Collaboration for Higher education and Research in Radiological and Nuclear Engineering and Radiation Protection,Covilhã - Portugal 24-29 May 2017
Measurement of annual dose due to background gamma radiation Luis Peralta 13th Workshop on European Collaboration for Higher Education and Research in Radiological and Nuclear Engineering and radiation protection, Univ. Beira Interior, Covilhã, 22-25 May 2017
Scintillating fiber optic dosimeters for breast and prostate brachytherapy L.M. Moutinho, I.F. Castro, H. Freitas, J. Melo, P. Silva, A. Gonçalves, L. Peralta, P.J. Rachinhas, P.C.P.S. Simões, S. Pinto, A. Pereira, J.A.M. Santos, M. Costa , and J.F.C.A. Veloso Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XVII, Proc. of SPIE Vol. 10058, 100580C, 2017 10.1117/12.2254397
Upgrades for the Precision Proton Spectrometer at the LHC: Precision Timing and Tracking Detectors M. Gallinaro (for the CMS and Totem Collaborations) AIP Conf.Proc. 1819 (2017) no.1, 040021 10.1063/1.4977151
Sub-jet structure as a discriminating quenching probe Xiaoming Zhang, Liliana Apolinário, José Guilherme Milhano, Mateusz Płoskoń Nucl.Phys. A956 (2016) 597-600 10.1016/j.nuclphysa.2016.02.028
Sub-jet structure as a discriminating quenching probe Xiaoming Zhang, Liliana Apolinário, José Guilherme Milhano, Mateusz Płoskoń Nucl.Phys. A956 (2016) 597-600 10.1016/j.nuclphysa.2016.02.028
A Comprehensive Analysis of Jet Quenching via a Hybrid Strong/Weak Coupling Model for Jet-Medium Interactions Jorge Casalderrey-Solana, Doga Can Gulhan, José Guilherme Milhano, Daniel Pablos, Krishna Rajagopal Nucl.Phys. A956 (2016) 613-616 10.1016/j.nuclphysa.2016.01.072
A Comprehensive Analysis of Jet Quenching via a Hybrid Strong/Weak Coupling Model for Jet-Medium Interactions Jorge Casalderrey-Solana, Doga Can Gulhan, José Guilherme Milhano, Daniel Pablos, Krishna Rajagopal Nucl.Phys. A956 (2016) 613-616 10.1016/j.nuclphysa.2016.01.072
OPENCoastS.pt – SERVIÇO DE PREVISÃO EM TEMPO REAL A PEDIDO PARA A CIRCULAÇÃO E AGITAÇÃO MARÍTIMA NA COSTA PORTUGUESA Joana Teixeira, João Rogeiro, Anabela Oliveira, André B. Fortunato, Alberto Azevedo, Marta Rodrigues, Jorge Gomes, Mário David Joana Teixeira, João Rogeiro, Anabela Oliveira, André B. Fortunato, Alberto Azevedo, OPENCoastS.pt – SERVIÇO DE PREVISÃO EM TEMPO REAL A PEDIDO PARA A CIRCULAÇÃO E AGITAÇÃO MARÍTIMA NA COSTA PORTUGUESA, Jornadas Portuguesas de Engenharia Costeira e Portuária, LNEC 2017