Scientific Publications

Scientific publications which used INCD resources

2026

International articles with referee

  1. Almeida, Gabriel, et al. "Universality, robustness, and limits of the eigenstate thermalization hypothesis in open quantum systems." Physical Review E 113.1 (2026): L012101.
  2. Neraz Shai, Sapir Korman Shadmi, Filipe Natalio, Substrate specificity and catalytic performance of bacterial cellulose synthase with chitin-specific active site motif substitution, Archives of Biochemistry and Biophysics

Oral Presentations

Proceeding in international conferences

  1. Abreu, R., Caetano, F., Carreira, F., Borrego, A. C., Nunes, S., Pérez-López, J.-Á., Segura, L., Vasconcelos, A. & Naser, M. (2026). Valor Público do Sistema de Informação dos Municípios Portugueses: Big Data aplicada ao Reporte Anual. 5th Public Setor Accounting International Congress. Mirandela: Ordem dos Contabilistas Certificados
  2. Caetano, F., Abreu, R., & López-Pérez, M. V. (2026). Artificial intelligence in financial distress management: Advancing beyond Portuguese municipalities. In L. Almeida, G. Azevedo, E. Vieira, & R. Marques (Eds.), The challenges of sustainability in accounting, finance and innovation (pp. 252–269). Springer. https://doi.org/10.1007/978-3-032-16268-7_14
  3. Caetano, F., Abreu, R., & López-Pérez, M. V. (2026). Bankruptcy models: Effects from digital accounting. In A. Rocha, F. García Peñalvo, C. J. Costa, & R. Gonçalves (Eds.), Proceedings of 20th Iberian Conference on Information Systems and Technologies (CISTI 2025) (pp. 850–861). Springer. https://doi.org/10.1007/978-3-032-10721-3_72
  4. Z.X. Hou, G. Pan, Q.G. Huang, Y. Luo, S. Wang, and C. Guedes Soares. "Numerical Study on the Flexible Flapping and Gliding Breaching of Cownose Ray Pectoral Fins" 8th International Conference on Maritime Technology and Engineering. 2026

Posters (internation meetings)

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

  1. Filipe Caetano, La Inteligencia Artificial en el contexto de la Contabilidad: Desarrollo de una plataforma colaborativa, PhD thesis of Universidad de Granada (ending in 2026)

Ongoing

Master Thesis

Finished

Ongoing

Patents

Datasets

2025

International articles with referee

  1. Storti, B. C., Sinval, J., Munro, Y. L., Diaz, F. J. M., & Sticca, M. G. (2025). Advisor-advisee relationship and the organizational culture of doctoral programs on doctoral students’ mental health and academic performance: A scoping review protocol. MethodsX. https://doi.org/10.1016/j.mex.2025.103433
  2. Gadelho, J.F.M., Barajas, G., Lara, J. and Guedes Soares, C., (2025), “Numerical analysis of Multiple-chamber OWCs efficiency using a fast PTO modelling approach in OpenFOAM”. Ocean Engineering 332, 121354. https://doi.org/10.1016/j.oceaneng.2025.121354
  3. Li, Hansheng, Wang, S., Guedes Soares, C., 2025, Scale-Induced Uncertainty in 2D Cylinder Flow Near the Free Surface at High Reynolds Numbers, Ocean Engineering, Submitted.
  4. Rodrigues, M.I.P., Wang, S., Islam, H., Abdelwahab1, H.S., Jiao, Jialong, Guedes Soares, C., 2025, Uncertainty analysis of a CFD solver for predicting ship motions in head waves, Ocean Engineering, Submitted.
  5. Ning, D., Wang, S., Guedes Soares, C., 2025. Coupled dynamics of a point absorber array with a shared mooring system. Ocean Eng. (submitted)
  6. Alexandre Blanckaert and Vitor C. Sousa, Interactions between mechanisms of reproductive, The American Society of Naturalists DOI: www.journals.uchicago.edu/doi/10.1086/740888
  7. Marôco, J., Harju-Lukkainnen, H., & Rautopuro, J. (2026). Worldwide predictors of science literacy in lower-secondary students: a TIMSS 2019 analysis. International Journal of Science Education, 48(4), 580–598. https://doi.org/10.1080/09500693.2024.2394239
  8. Lehtola, P., Marôco, J., Pulkkinen, J. et al. The validity and comparability of motivational constructs in TIMSS 2019. Large-scale Assess Educ 14, 9 (2026). https://doi.org/10.1186/s40536-026-00283-0
  9. Marôco, J., & von Davier, M. (2026). Imputing PIRLS’s home socioeconomic status from students’ and schools’ questionnaire data: a simulation with MICE. International Journal of Testing, 26(1), 38–53. https://doi.org/10.1080/15305058.2025.2595574
  10. Løken TK, Hanssen NB, Olsen K and Marôco J (2026) Norwegian validation of the University Student Engagement Inventory. Front. Psychol. 17:1734409. doi: 10.3389/fpsyg.2026.1734409
  11. Dias-Almeida, B., de Oliveira Gonçalves, P., Marôco, J. et al. Assessing autism knowledge in portugal: validation of the autism spectrum knowledge scale (ASKS-PT). Curr Psychol 45, 617 (2026). https://doi.org/10.1007/s12144-026-09232-0
  12. Joaquim F. Silva and Jose C. Cunha. A scalable model for frequency distribution of low occurrence multi-words towards handling very large spectrum of text corpora sizes. In Machine Learning and Knowledge Discovery in Databases. Research Track: European Conference, ECML PKDD 2025, Porto, Portugal, September 15, 2025, Proceedings, Part VII, pages 402–418, Berlin, Heidelberg, 2025. Springer-Verlag. (CORE A conference)
  13. Ning, D., Wang, S., Chen, H. and Soares, C.G., 2026. Coupled dynamics of a point absorber array with a shared mooring system. Ocean Engineering, 343, p.123447.
  14. Ning, D., Wang, S. and Soares, C.G., 2026. Analysis of three-dimensional and hydroelastic effects on high-velocity water entry of a rectangular plate. Ocean Engineering, 352, p.124445
  15. Rodrigues, M.I.P., Wang, S., Islam, H., Abdelwahab, H.S., Jiao, J. and Soares, C.G., 2026. Uncertainty analysis of a CFD solver for predicting ship motions in head waves. Ocean Engineering, 343, p.123129.
  16. Pavloudi, Christina, et al. "First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples." ARPHA Preprints 6 (2025): e146366. (https://doi.org/10.3897/arphapreprints.e146366)
  17. Abreu, R., Caetano, F., Carreira, F., Borrego, A. C., & Nunes, S. (2026). Tax strategy and political ideology in Portuguese municipalities: An application of the boosting technique. In Á. Rocha, F. J. García-Peñalvo, R. Gonçalves, A. García-Holgado, & F. Moreira (Eds.), Proceedings of 19th Iberian Conference on Information Systems and Technologies (CISTI 2024) (pp. 365–376). Springer. https://doi.org/10.1007/978-3-032-12882-9_32
  18. Abreu, R., Carreira, F., Borrego, A. C., Nunes, S., & Caetano, F. (2025). Fiscal clustering: Tax burdens and strategies across Portuguese municipalities [Conference presentation]. 11th International Conference on CSR, Sustainability, Ethics, and Governance, ESTeSL, Portugal.
  19. Abreu, R., Carreira, F., Borrego, A. C., Nunes, S., Caetano, F., Pérez-López, J.-Á., & Segura, L. (2025). The role of the taxation strategies of the Portuguese municipalities in shaping electoral outcomes. In C. R. Tănăsescu, C. Oprean-Stan, S. O. Idowu, & B. Díaz Díaz (Eds.), Advancements in sustainable development (pp. 217–242). Springer. https://doi.org/10.1007/978-3-031-86337-0_13
  20. Abreu, R., Nunes, S., Borrego, A. C., Carreira, F., Caetano, F., & Pérez-López, J.-Á. (n.d.). High costs, high impacts: Faculty evaluation and fairness in the open access era [Conference presentation]. 23rd International Conference on Corporate Social Responsibility and Sustainability (SRRNet), Lisbon, Portugal.
  21. Caetano, F., Abreu, R., & López-Pérez, M.-V. (2025, July 14–15). Artificial intelligence in financial distress management: Advancing beyond Portuguese municipalities [Conference presentation]. 6th International Conference on Accounting and Finance Innovation (ICAFI 2025), Aveiro, Portugal
  22. Caetano, F., Abreu, R., Brioso, P., & Lopez-Pérez, M. V. (2026). Accelerating literature reviews with multi-database information systems for financial distress research. Systems, 14(2), Article 181. https://doi.org/10.3390/systems14020181
  23. 1CGH Catalog ; Published in: Mon.Not.Roy.Astron.Soc. 539 (2025) 2, 1458-1470 ; MNRAS_link: https://academic.oup.com/mnras/article/539/2/1458/8120033?login=false ; INSPIRE_link: https://inspirehep.net/literature/2853545 ; DOI: 10.1093/mnras/staf329
  24. Radio Loud Quazar, z=6.13 ; Astrophys.J.Lett. 990 (2025) 2, L56 ; ApJL_link: https://iopscience.iop.org/article/10.3847/2041-8213/aded0a ; INSPIRE_link: https://inspirehep.net/literature/2967003 ; DOI: 10.3847/2041-8213/aded0a
  25. Marques, M, Pascoal, F, Villela, H, Santos, E, Baylina, N, Peixoto, RS, Keller-Costa, T, & Costa, R. (2025). “Selective shaping of prokaryotic communities and core symbiont maintenance suggest large-scale aquarium facilities as reservoirs of microbiome diversity in octocorals”. Frontiers in Microbiology, 16:1651109. https://doi.org/10.3389/fmicb.2025.1651109
  26. Madeira, Carolina; Pedro M. Costa; Madeira, Diana; Vinagre, Catarina. Ouputs from research project ExtremeOceans - Unravelling evolutionary physiology landscapes of coastal marine fauna under extreme temperatures using a multi-layer Systems Biology approach (NOVA.ID.FCT, University of Aveiro and CCMAR), Funded by the Portuguese Foundation for Science and Technology. 2025. https://doi.org/10.5281/zenodo.15761756
  27. Madeira, Carolina; Diniz, Mário; Pedro M. Costa. Partner 3: Portugal (NOVA University Lisbon) - Outputs from EASMO: Eastern Tropical Pacific Fish on the Move: Biodiversity Reorganisation and Societal Consequences. 2025. https://doi.org/10.5281/zenodo.15642813
  28. Biguino, B., Haigh, I., Dias, J.M., Brito, A.C. (2025). Features and trends of marine heat waves and marine cold spells along the Western Iberian Coast from four decades of satellite data. Scientific Reports, 16, 1860.
  29. Brandão, P., Costa, L.M, Costa, J.L, Cabral, H.N, Marques, T.M, França, S. 2025. Trends in fish diversity in Portuguese estuaries in the past decades and predictions in face of global changes. Estuarine, Coastal and Shelf Science, 109048. https://doi.org/10.1016/j.ecss.2024.109048
  30. Darras, K.F.A., Rountree, R.A., Van Wilgenburg, S.L., Cord, A.F., Pitz, F., Chen, Y., Dong, L., Rocquencourt, A., Desjonquères, C., Diaz, P.M., Lin, T.-H., Turco, T., Emmerson, L., Bradfer-Lawrence, T., Gasc, A., Marley, S., Salton, M., Schillé, L., Wensveen, P.J., Wu, S.-H., Acero-Murcia, A.C., et al. (2025), Worldwide Soundscapes: A Synthesis of Passive Acoustic Monitoring Across Realms. Global Ecol Biogeogr, 34: e70021. https://doi.org/10.1111/geb.70021
  31. Santos G.S., Ribeiro F., Pereira E., Silva A.F., Almeida P.R., Ribeiro D., Quintella B.R.2025. Behaviour of the Apex Predator European Catfish (Silurus glanis) on a Recently Invaded Reservoir. Ecology of Freshwater Fish, 34: e12817 https://doi.org/10.1111/eff.12817
  32. Sent, G., Spyrakos, E., Jackson, T., Atwood, E., Brotas, V., Groom, S., Brito, A.C. (2025). Can optical water types be used as ecological indicators? Insights from a temperate estuary. International Journal of Applied Earth Observation and Geoinformation, 144, 104880.
  33. Silva A., Castro J., Pereira E., Marques J., Silva T., Lino P., Candeias-Mendes A., Pousão-Ferreira P., Pinto B., Costa J., de Almeida P., Quintella B.R. 2025. An Acclimatization Period in a Cage Promotes Site Fidelity of Hatchery-Reared Dusky Groupers to the Release Areas. Aquatic Conservation: Marine and Freshwater Ecosystems, 35: e70125 https://doi.org/10.1002/aqc.70125
  34. Verhelst P., Righton D., Aarestrup K., Almeida P.R., Bašić T., Bolland J.D., Carter L., Coeck J., Costa J.L., Dainys J., Davidsen J.G., Domingos I., Dorow M., Feunteun E., Frankowski J., Griffioen A.B., Monteiro R.M., Moore A., Oldoni D., Piper A.T., Quintella B.R., Reeds J., Trancart T., Verschelde P., Winter H.V., Reubens J. 2025. The Seaward Migration of European Eel at a Continental Scale: A Europe-Wide Biotelemetry Meta-Analysis. Fish and Fisheries, 26: 65-668. https://doi.org/10.1111/faf.12904
  35. Vieira, S., Adão, H., & Vicente, C. S. L. (2025). Assessing spatial and temporal patterns of benthic bacterial communities in response to different sediment conditions. Marine Environmental Research, 204, 106963. https://doi.org/10.1016/j.marenvres.2025.106963

Oral Presentations

  1. Marques, M, Pascoal, F, Villela, H, Santos, E, Baylina, N, Peixoto, RS, Keller-Costa, T, & Costa, R. (2025). “Selective shaping of prokaryotic communities and core symbiont maintenance suggest large-scale aquarium facilities as reservoirs of microbiome diversity in octocorals”. Frontiers in Microbiology, 16:1651109. https://doi.org/10.3389/fmicb.2025.1651109
  2. Marques, M , Keller-Costa, T, Peixoto, R, & Costa, R. “Climate change impacts on octocorals: emergent pathogens, symbiont preservation and probiotic solutions”. Institute Seminar at Institute for Bioengineering and Biosciences, Instituto Superior Técnico. Lisbon, Portugal. July 28th
  3. Climate change in the Eastern Tropical Pacific: Molecular and phenotypic responses of the commercial fish spotted rose snapper to multistressors – Scientific discoveries and progress Stakeholder meeting with the EASMO Scientific Pannel Advisory Board Leibniz Centre for Tropical Marine Research
  4. Climate change in the Eastern Tropical Pacific: Adaptive responses of the commercial fish spotted rose snapper – Implications for Conservation. Stakeholder meeting with the ETP Node of the Global Coral Reef Monitoring Network Leibniz Centre for Tropical Marine Research
  5. Climate change in the Eastern Tropical Pacific: Impacts on the commercial fish spotted rose snapper - Implications for Conservation, Fisheries and Aquaculture. Stakeholder meeting with 9 NGOs from the Eastern Tropical Pacific: Migramar, Fundácion Malpelo Colombia, Marviva, Ecomares, Wildlife Conservation Society, Conservation International, Charles Darwin Foundation Galapagos, Asociación Costa Rica por Siempre and Fundación Pacífico Leibniz Centre for Tropical Marine Research
  6. Dark matter imprints on the neutron star properties and merger dynamics, V. Sagun, at the University of Nottingham, Nottingham, United Kingdom, 2 December, 2025 (Invited seminar).
  7. Neutron stars as dark matter probes, V. Sagun, at the CENTRA, Instituto Superior Técnico, University of Lisbon, Portugal, 15 October, 2025 (Invited seminar).
  8. Fastest spinning millisecond pulsars: indicators for quark matter in neutron stars?, C. Gärtlein, V. Sagun, D. Blaschke, O. Ivanytskyi, I. Lopes at the Modern Physics of Compact Stars and Relativistic Gravity conference, Yerevan University, Yerevan, Armenia, 23–26 September 2025 (Plenary talk, remote).
  9. The impact of dark matter on neutron stars' properties and binary neutron star mergers, SPINS-UK 2025, the Annual UK Neutron Star Meeting, Royal Holloway, University of London, UK, 15-17 September 2025 (Plenary talk).
  10. Multi-Messenger Probes of Dark Matter With Neutron Stars and Binary Neutron Star Mergers, at the INT Workshop INT-25-94w "Nuclear Physics in Mergers - Going Beyond the Equation of State", Institute of Nuclear Theory, University of Washington, Seattle, USA, 8-12 September 2025 (Invited talk).
  11. The Impact of Dark Matter on the Dynamics of Binary Neutron Star Mergers, International Conference "Dark Matter and Stars: Multi-Messenger Probes of Dark Matter and Modified Gravity", Queen's University, Kingston, Ontario, Canada, 14-16 July 2025 (Plenary talk).
  12. Are there indications for quark deconfinement in fast-spinning massive neutron stars?, International Conference on QCD in Extreme Conditions (XQCD), Wroclaw, Poland, 2-4 July 2025 (Plenary talk).
  13. Numerical Relativity Simulations of Dark Matter Admixed Binary Neutron Stars, at the Black Holes, Neutron Stars, and Gravitational Waves @ Black Sea Conference, Varna, Bulgaria, 16-20 June 2025 (Invited talk).
  14. Gravitational Wave Signatures of Dark Matter in Neutron Star Mergers, Department of Applied Mathematics and Theoretical Physics, University of Cambridge, United Kingdom, 30 May 2025 (Invited seminar).
  15. Fastest spinning millisecond pulsars as indicators of deconfined quark matter in neutron stars, at the 2nd Workshop on modern equations of state and spectroscopy in neutron-star matter, Universidad de Alcalá, Alcalá de Henares, Spain, 26-28 May 2025.
  16. Numerical relativity simulations of dark matter admixed binary neutron stars, V. Sagun, E. Giangrandi, H. R. Rüter, N. Kunert, M. Emma, A. Abac, A. Adhikari, T. Dietrich, W. Tichy, C. Providência, at the Theory Astrophysics and Gravity (STAG) Research Centre, University of Southampton, Southampton, United Kingdom, 1 May 2025 (Invited seminar).
  17. Fastest spinning millisecond pulsars: indicators for quark matter in neutron stars?, V. Sagun, C. Gärtlein, O. Ivanytskyi, D. Blaschke, I. Lopes, at the Department of Physics, University of Southampton, Southampton, United Kingdom, 4 April 2025 (Invited seminar).
  18. Constraining the deconfinement phase transition properties at zero temperature with the fastest spinning millisecond pulsars, V. Sagun, C. Gärtlein, O. Ivanytskyi, D. Blaschke, I. Lopes, at the Center for Cosmology and AstroParticle Physics, Ohio State University, Columbus, USA, 25 March 2025 (Invited seminar).
  19. Gravitational wave signatures of dark matter in binary neutron star mergers, V. Sagun, A. Abac, A. Adhikari, T. Dietrich, M. Emma, E. Giangrandi, O. Ivanytskyi, H. Koehn, N. Kunert, C. Providência, H. R. Rüter, R. Somasundaram, W. Tichy, at the American Physical Society Global Physics Summit, Anaheim, USA, 16-21 March 2025 (Invited talk).
  20. Vieira S. & Adão H.(2025). Food web attributes to assess estuarine benthic ecosystem” European Marine Biology Symposium (EMBS) EuroMarine, 06-09 July, Bodø, Norway, – Oral presentation.  https://doi.org/10.5281/zenodo.16753702
  21. A forecasting framework for galactic cosmic ray flux in space weather applications David Pelosi, Fernando Barão, Bruna Bertucci, Francesco Faldi, Emanuele Fiandrini, Alejandro Reina Conde, Miguel Orcinha, Nicola Tomassetti Advances in Space Research 76 (2025) 5700–5713 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-11-01 10.1016/j.asr.2025.08.022
  22. Operation and performance of the ATLAS Tile calorimeter in LHC Run 2 ATLAS Collaboration (N. Castro, J. Gentil, A. Gomes, M. Kholodenko, A. Maio, H. Santos, L. Gurriana, L. Seabra, R. Pedro, B. Pinheiro, et al.) Eur. Phys. J. C 84 (2024) 1313 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-08 10.1140/epjc/s10052-024-13151-4
  23. Expected tracking performance of the ATLAS Inner Tracker at the High-Luminosity LHC ATLAS Collaboration (L. Coelho, R. Gonçalo) J. Instrum. 20 (2025) P02018 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-01 10.1088/1748-0221/20/02/P02018
  24. Measurement of the associated production of a top-antitop-quark pair and a Higgs boson decaying into a bb pair in pp collisions at 13 TeV using the ATLAS detector at the LHC ATLAS Collaboration (R. Gonçalo, A.L.Carvalho, et al.) Eur. Phys. J. C 85 (2025) 210 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-24 10.1140/epjc/s10052-025-13740-x
  25. Is Tokenization Needed for Masked Particle Modelling? Matthew Leigh, Samuel Klein, Francois Charton, Tobias Golling, Lukas Heinrich, Michael Kagan, Ines Ochoa, Margarita Osadchy Mach. Learn.-Sci. Technol. 6 (2025) 025075 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-27 10.1088/2632-2153/addb98
  26. t-channel dark matter models - a whitepaper Chiara Arina et al. (R. Pedro) Eur. Phys. J. C 85 (2025) 975 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-12 10.1140/epjc/s10052-025-14635-7
  27. The critical importance of software for HEP Christina Agapopoulou , I. Ochoa et al. (25 authors) Eur. Phys. J. C 85 (2025) 1142 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-13 10.1140/epjc/s10052-025-14571-6
  28. Measurement of the Depth of Maximum of Air-Shower Profiles with energies between 3 and 100 EeV using the Surface Detector of the Pierre Auger Observatory and Deep Learning Pierre Auger Collaboration (366 authors) Phys. Rev. D 111 (2025) 022003 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-13 10.1103/PhysRevD.111.022003
  29. The Pierre Auger Observatory Open Data The Pierre Auger Collaboration Eur. Phys. J. C 85 (2025) 70 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-24 10.1140/epjc/s10052-024-13560-5
  30. Search for a diffuse flux of photons with energies above tens of PeV at the Pierre Auger Observatory The Pierre Auger Collaboration J. Cosmol. Astropart. Phys. 5 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-23 10.1088/1475-7516/2025/05/061
  31. Outdoor MARTA RPCs performace update L. Lopes, P. Assis, G. Neves, R. Conceicao, M. Ferreira, L. Mendes, J. C. Nogueira Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1076 (2025) 170476 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 10.1016/j.nima.2025.170476
  32. Probabilistic mapping between multiparticle production variables and the depth of maximum in proton-induced extensive air showers L. Cazon, R. Conceição, M. A. Martins, F. Riehn Phys.Rev.D 112 (2025) 4, 043016 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-14 10.1103/1664-pht6
  33. Sensitivity of hybrid particle detectors to the energy spectra of air shower components P. Assis, R. Conceição, P. J. Costa, M. Freitas, B. Tomé JCAP 10 (2025) 097 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-27 10.1088/1475-7516/2025/10/097
  34. Global tuning of hadronic interaction models with accelerator-based and astroparticle data J. Albrecht et al. (55 authors) Nat. Rev. Phys. (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-16 10.1038/s42254-025-00897-3
  35. Measuring the muon content of inclined air showers using AERA and the water-Cherenkov detectors of the Pierre Auger Observatory, The Pierre Auger Collaboration Phys. Rev. D 112 (2025) 123042 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-23 10.1103/2q9f-pbrp
  36. Bottom quark energy loss and hadronization with B+ and Bs0 nuclear modification factors using pp and PbPb collisions at root sNN=5.02 TeV CMS Collaboration (2379 authors) J. High Energy Phys. 2 (2025) 195 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-27 10.1007/JHEP02(2025)195
  37. PICOSEC Micromegas precise-timing detectors: development towards large-area application and integration Y. Meng et al. (52 authors) J. Instrum. 20 (2025) C03015 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-01 10.1088/1748-0221/20/03/C03015
  38. Single channel PICOSEC Micromegas detector with improved time resolution A. Utrobicic et al. (50 authors) Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1072 (2025) 170127 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-01 10.1016/j.nima.2024.170127
  39. Properties of carbon-infused silicon LGAD devices after non-uniform irradiation with 24 GeV/c protons C. da Cruz e Silva, J. Hollar, M.Gallinaro, G. da Molin, G. Marozzo, et al Nucl.Instrum.Meth.A 1076 (2025) 170417 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-17 https://doi.org/10.48550/arXiv.2412.13780
  40. Dark sector searches with the CMS experiment CMS collaboration Phys.Rept. 1115 (2025) 448 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-17 https://doi.org/10.1016/j.physrep.2024.09.013
  41. Angular analysis of the B0 -> K*(892)0m+m- decay in proton-proton collisions at root s=13 TeV CMS Collaboration (2389 authors) Phys. Lett. B 864 (2025) 139406 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-01 10.1016/j.physletb.2025.139406
  42. The CMS barrel timing layer: test beam confirmation of module timing performance F.Addesa et al. Nucl.Instrum.Meth.A 1081 (2026) 170823 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-19 https://doi.org/10.48550/arXiv.2504.11209
  43. Study of same-sign W boson scattering and anomalous couplings in events with one tau lepton from pp collisions at 13 TeV CMS collaboration JHEP 2510 (2025) 219 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-27 https://link.springer.com/article/10.1007/JHEP10(2025)219
  44. Neutrinoless double beta decay sensitivity of the XLZD rare event observatory XLZD Collaboration (439 authors) J. Phys. G-Nucl. Part. Phys. 52 (2025) 045102 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-30 10.1088/1361-6471/adb900
  45. Dark Matter Search Results from 4.2 Tonne-Years of Exposure of the LUX-ZEPLIN (LZ) Experiment LZ Collaboration (218 authors) Phys. Rev. Lett. 135 (2025) 011802 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 10.1103/4dyc-z8zf
  46. The XLZD Design Book: towards the next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. (443 authors) Eur. Phys. J. C 85 (2025) 1192 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-23 10.1140/epjc/s10052-025-14810-w
  47. Development and Assessment of a New Multichannel Electrocutaneous Device for Non-Invasive Somatosensory Stimulation for Magnetic Resonance Applications Carolina Travassos, Alexandre Sayal, Paulo Fonte, Bruno Direito, Luis Lopes, Nuno Carolino, Sonia Afonso, Tania Lopes, Teresa Sousa, Miguel Castelo-Branco IEEE Trans. Neural Syst. Rehabil. Eng. 33 (2025) 1918-1928 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 10.1109/TNSRE.2025.3566144
  48. Study of the radiation hardness of the ATLAS Tile Calorimeter optical instrumentation with Run 2 data J. Abdallah, B. Pereira, R. Pedro, P. Conde et al. (56 authors) JINST 20 (2025) 06, P06006 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-06 10.1088/1748-0221/20/06/P06006
  49. Unconventional Three-Dimensional Active Seismic Tomography Applied in the Lousal Mine (Iberian Pyrite Belt, Portugal) I. Hamak, P. Teixeira, J. Borges, I. Koulakov, R. Oliveira, B. Caldeira, M. Bezzeghoud, J. X. Matos, S. Andringa Surv Geophys (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-25 https://doi.org/10.1007/s10712-025-09920-9
  50. Initial measurement of reactor antineutrino oscillation at SNO+ A. Allega et al (SNO+ Collaboration) Eur. Phys. J. C 85, 17 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-10 10.1140/epjc/s10052-024-13687-5
  51. Measurement of reactor antineutrino oscillation at SNO+ M. Abreu et al. (SNO+ Collaboration) Phys. Rev. Lett. 135 (2025) 121801 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-15 10.1103/gypt-lc9v
  52. Impact of angle-dependent recombination on neutrino energy reconstruction in LArTPCs J. Vences, J. Maneira, C. Vilela J. Vences et al 2025 JINST 20 P09026 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-16 10.1088/1748-0221/20/09/P09026
  53. First Evidence of Solar Neutrino Interactions on C 13 M. Abreu et al. (SNO+ Collaboration) Phys. Rev. Lett. 135, 241803 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-10 10.1103/1frl-95gj
  54. Five-body systems with Bethe-Salpeter equations G. Eichmann, M.T. Peña, R. D. Torres Phys. Lett. B 866, 139525 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-28 10.1016/j.physletb.2025.139525
  55. Five-point functions and the permutation group S5 G. Eichmann, and R. D. Torres Phys. Rev. D 111, 094008 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-07 10.1103/PhysRevD.111.094008
  56. An asymmetric fission island driven by shell effects in light fragments P. Morfouace et al. (111 authors) Nature 641 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-08 10.1038/s41586-025-08882-7
  57. Systematic Bayesian optimization for atomic structure calculations of heavy elements Ricardo Ferreira da Silva, Andreas Flörs, Luís Leitão, José P. Marques, Gabriel Martínez-Pinedo, and Jorge M. Sampaio Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-02 10.1103/PhysRevA.112.012802
  58. Actinide signatures in low electron fraction kilonova ejecta Quentin Pognan, Meng-Ru Wu, Gabriel Martínez-Pinedo, Ricardo Ferreira da Silva, Anders Jerkstrand, Jon Grumer, Andreas Flörs Quentin Pognan, , Meng-Ru Wu, Gabriel Martínez-Pinedo, Ricardo Ferreira da Silva, Anders Jerkstrand, Jon Grumer, and Andreas Flörs. Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-19 10.48550/arXiv.2409.16210
  59. Microfacet projected area-based correction for unified model of Geant4 for rough surfaces Morozov, A. A. Morozov 2025 JINST 20 P05021 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-21 10.1088/1748-0221/20/05/P05021
  60. Sensitivity of coaxial prompt gamma-ray monitoring in heterogeneous geometries: A Monte Carlo simulation study F. Miguéis, J.V. Casaña, D. García-Fernández, F. Hueso-González, G. Llosá, A.F. Prieto, P.V. Regueiro, I. García Rivas, A. Ros, P. Crespo, H. Simões Radiation Physics and Chemistry, 232 (2025) 112639 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-15 10.1016/j.radphyschem.2025.112639
  61. Ants3 toolkit: Front-end for Geant4 with interactive GUI and Python scripting A. Morozov, L.M.S. Margato, G. Canezin, J. Gonzalez A. Morozov et al., Computer Physics Communications 318 (2025) 109869 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-15 10.1016/j.cpc.2025.109869
  62. Multiplicities of positive and negative pions, kaons and unidentified hadrons from deep-inelastic scattering of muons off a liquid hydrogen target G.D. Alexeev et al. (COMPASS Coll.) PRD 112, 012002 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-02 10.1103/q4rb-bhcg
  63. Towards an unbiased jet energy loss measurement Liliana Apolinário, Lénea Luís, José Guilherme Milhano, João M. Silva JHEP 01 (2025) 164 Jrn-Dir Articles in international journals (with direct contribution from team) published https://doi.org/10.1007/JHEP01(2025)164
  64. Enhancing charge ratio sensitivity to hadronization effects via jet selections on resolved SoftDrop splitting Liliana Apolinário, Nuno Olavo Madureira, Raghav Kunnawalkam Elayavalli Phys.Rev.D 111 (2025) 3, 034008 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-01 https://doi.org/10.1103/PhysRevD.111.034008
  65. Gravitational waves from supercooled phase transitions in conformal Majoron models of neutrino mass Joao Goncalves, Danny Marfatia, Antonio P. Morais, Roman Pasechnik J. High Energy Phys. 2 (2025) 110 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-18 10.1007/JHEP02(2025)110
  66. Unearthing large pseudoscalar Yukawa couplings with machine learning Fernando Abreu de Souza, Rafael Boto, Miguel Crispim Romão, Pedro N. Figueiredo, Jorge C. Romão JHEP 07 (2025) 268 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-15 https://doi.org/10.1007/JHEP07(2025)268
  67. A generalized picture of colour decoherence in dense QCD media Samuel Abreu, Xoán Mayo López, Guilherme Milhano, Alba Soto-Ontoso JHEP 03 (2025) 216 Jrn-Dir Articles in international journals (with direct contribution from team) accepted 2025-03-28 https://doi.org/10.1007/JHEP03(2025)216
  68. Exploring scotogenic parameter spaces and mapping uncharted dark matter phenomenology with multi-objective search algorithms Fernando Abreu de Souza, Nuno Filipe Castro, Miguel Crispim Romão, Werner Porod JHEP 10 (2025) 116 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-13 https://doi.org/10.1007/JHEP10(2025)116
  69. Nonlocal high- p t transport in anisotropic QCD matter João Barata, Xiaojian Du, Andrey V. Sadofyev Phys.Rev.D 111 (2025) 11, 114017 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-01 https://doi.org/10.1103/25qf-3l1c
  70. Giving wake to energy-energy correlators: Hydrodynamic response on the celestial sphere João Barata, Matvey V. Kuzmin, José Guilherme Milhano, Andrey V. Sadofyev Phys.Rev.D 112 (2025) 1, 1 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 https://doi.org/10.1103/q8pr-djlw
  71. Precise Determination of the Strong Coupling Constant from Dijet Cross Sections up to the Multi-TeV Range F. Ahmadova, D. Britzger, X. Chen, J. Gassler, A. Gehrmann-De Ridder, T. Gehrmann, N. Glover, C. Gwenlan, G. Heinrich, A. Huss, L. Kunz, João Pires, K. Rabbertz, M. Sutton Phys.Rev.Lett. 135 (2025) 3, 031903 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-17 10.1103/knrv-2r3t
  72. Type-II seesaw mechanism for Dirac neutrinos and its implications on Neff and lepton flavor violation in a 3-3-1 model Vinicius Oliveira, Patricio Escalona, Lucia Angel, C. A. de S. Pires, Farinaldo S. Queiroz J. High Energy Phys. 7 (2025) 197 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-17 10.1007/JHEP07(2025)197
  73. Gravitational waves from color restoration in a leptoquark model of radiative neutrino masses Marten Bertenstam, Marco Finetti, Antonio P. Morais, Roman Pasechnik, Johan Rathsman J. Cosmol. Astropart. Phys. 8 (2025) 077 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-01 10.1088/1475-7516/2025/08/077
  74. Assessing Uncertainties in Parton Showers at Double Logarithmic Accuracy for Jet Quenching Studies Carlota Andrés, Liliana Apolinário, Nestor Armesto, Andre Cordeiro, Fabio Dominguez, Guilherme Milhano JHEP 08 (2025) 160 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-20 https://doi.org/10.1007/JHEP08(2025)160
  75. Apples to apples in jet quenching: robustness of Machine Learning classification of quenched jets to underlying event contamination João Arruda Gonçalves, José Guilherme Milhano JHEP 09 (2025) 028 Jrn-Dir Articles in international journals (with direct contribution from team) accepted 2025-09-02 https://doi.org/10.1007/JHEP09(2025)028
  76. Supercooled phase transitions in conformal dark sectors explain NANOGrav data Joao Goncalves, Danny Marfatia, Antonio P. Morais, Roman Pasechnik Phys. Lett. B 869 (2025) 139829 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-01 10.1016/j.physletb.2025.139829
  77. Primordial black holes and magnetic fields in conformal neutrino mass models Shyam Balaji, Joao Goncalves, Danny Marfatia, Antonio P. Morais, Roman Pasechnik J. Cosmol. Astropart. Phys. 10 (2025) 064 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-01 10.1088/1475-7516/2025/10/064
  78. QCD antenna radiative spectrum in dense media within the Improved Opacity Expansion Matvey V. Kuzmin, João M. Silv JHEP 12 (2025) 022, JHEP 12 (2025) 022 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-01 https://doi.org/10.1007/JHEP12(2025)022
  79. Systematic Study on the Quality of Flux-grown Al2O3 Single Crystals for Dosimetry Applications, C. Rodrigues, J.G.M. Saraiva, A.P. Gonçalves, L. Peralta Solid State Sciences 160, 107835 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-17 10.1016/j.solidstatesciences.2025.107835
  80. Do cell culturing influence the radiosensitizing effect of gold nanoparticles: a Monte Carlo study. J. Antunes, T. Pinheiro, I. Marques, S. Pires, M. Filomena Botelho, J. M. Sampaio & A. Belchior EJNMMI Physics, 12(1), 41 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-18 10.1186/s40658-025-00746-3
  81. Chemical mechanism in gold nanoparticles radiosensitization: A Monte Carlo simulation study. Antunes, J., Rabus, H., Mendes, F., Paulo, A., & Sampaio, J. M. Rad. Phys. Chem. 232, 112637 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 j.radphyschem.2025.112637
  82. Differentiation Stage Predicts Radiosensitivity in Mesenchymal-Like Pancreatic Cancer Su, T., Yu, X., Hoseini-Ghahfarokhi, M., Flint, D. B., Bright, S. J., Antunes, J. et al. Int J Radiat Oncol Biol Phys. 123(1):270-281 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-01 10.1016/j.ijrobp.2025.03.034
  83. Thickness and Uniformity of Commercial Aluminum Foils L. Peralta, A. I. Campos, M. S. Rodrigues J. Mater. Eng. Perform. 34 (2025) 9637-9644 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-30 10.1007/s11665-025-10722-8
  84. Environmental workplace conditions, occupational safety, social areas, and gender: Key drivers of job satisfaction in Europe Dina Pereira, João Leitão, Sandra Soares Journal of Management & Organization (2025): 1-32. Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-12-09 https://doi.org/10.1017/jmo.2025.10067
  85. Stability studies of sealed (zero gas flow) resistive plate chambers A. Blanco, P. Fonte, L. Lopes, M. Pimenta NIMA 1075, June 2025, 170396 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-10 10.1016/j.nima.2025.170396
  86. miniTRASGO: A compact RPC tracker for cosmic ray studies C. Soneira-Landín, A. Blanco, L.M. Fraile, Juan A. Garzón, G. Kornakov, L. Lopes, V.M. Nouvilas, J.M. Udías NIMA 1077, August 2025, 170511 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-01 10.1016/j.nima.2025.170511
  87. Resistive Plate Chambers for brain PET imaging and particle tracking and timing (TOF-tracker) da Fonte, PJR; Lopes, LAV; Clemêncio, FMC; de Sousa, JMTC; do Fetal, STG; Loureiro, CFM; Michel, J; Saraiva, JP; Traxler, M; Abrunhosa, A; Blanco, A; Castelo-Branco, M Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-05-05 10.5604/01.3001.0055.0837
  88. Characterization of sealed (zero gas flow) RPCs under strong irradiation A. Blanco, Mario Carvalho, Susete Fetal, Luis Lopes, Telmo Paes, Joana Pinto, Paulo Fonte Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1080 (2025) 170743 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-30 10.1016/j.nima.2025.170743
  89. New readout codification of large-area multi-gap timing RPCs for Muon Scattering Tomography João Saraiva , Alberto Blanco Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1076 (2025) 170466 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-01 10.1016/j.nima.2025.170466
  90. miniTRASGO: design and initial results of a compact Resistive Plate Chamber telescope for worldwide cosmic ray monitoring C. Soneira-Landín, A. Blanco, L.M. Fraile, J.A. Garzón, G. Kornakov, L. Lopes, J. Michel, V.M. Nouvilas, J.M. Udías Advances in Space Research Volume 76, Issue 9, 1 November 2025, Pages 5688-5699 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-01 10.1016/j.asr.2025.07.096
  91. Observation of Collider Neutrinos without Final State Muons with the SND@LHC Experiment SND LHC Collaboration (158 authors) Phys. Rev. Lett. 134 (2025) 231802 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-13 10.1103/r2qy-9hft
  92. Studies of hadronic showers in SND@LHC SND@LHC Collaboration JINST 20 (2025) 10 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-22
  93. Jet evolution in a quantum computer: quark and gluon dynamics N. F. Castro, J. G. Milhano, M. G. Jordao Oliveira Eur. Phys. J. C 85 (2025) 1324 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-11-18 10.1140/epjc/s10052-025-15024-w
  94. Epidemiological methods in transition: Minimizing biases in classical and digital approaches Sara Mesquita, Lília Perfeito, Daniela Paolotti, Joana Gonçalves-Sá PLOS Digital Health Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-13 10.1371/journal.pdig.0000670
  95. Open cluster dissolution rate and the initial cluster mass function in the solar neighbourhood: Modelling the age and mass distributions of clusters observed by Gaia Almeida, D., Moitinho, A., Moreira, S. 2025, A&A, 693, A305 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-01-28 10.1051/0004-6361/202451853
  96. Modelling the evolution of the Galactic disc scale height traced by open clusters Moreira, S., Moitinho, A., Silva, A., et al. 2025, A&A, 694, A70 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-04 10.1051/0004-6361/202450369
  97. Light-induced negative differential resistance and neural oscillations in neuromorphic photonic semiconductor micropillar sensory neurons Bejoys Jacob, Juan Silva, Jose M. L. Figueiredo, Jana B. Nieder, Bruno Romeira Nature Sci Rep 15, 6805 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-25 10.1038/s41598-025-90265-z
  98. Anthropogenic organic aerosol in Europe produced mainly through second-generation oxidation Xiao, M., Wang, M., Mentler, B. et al. Nature Geoscience volume 18, pages239–245 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-10 10.1038/s41561-025-01645-z
  99. The JUICE Radiation Environment Monitor, RADEM W. Hajdas, P. Goncalves, M. Pnto, ..., F. Santos, L. Arruda et al. Space Science Reviews, Volume 221, article number 43, (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-03-26 10.1007/s11214-025-01163-9
  100. Mission analysis of space-based small camera for space debris detection J. Filho; P. Gordo; N. Peixinho; R. Melicio; P. Garcia; T. Flohrer Advances in Space Research, 76, Issue 52025, Pages 3109-3121 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-12 10.1016/j.asr.2025.06.025
  101. Heuristic Global Optimization for Thermal Model Reduction and Correlation in Aerospace Applications João P. Castanheira; Beltran N. Arribas; Rui Melicio; Paulo Gordo; André R. R. Silva Applied Sciences 2025, 15(13), 7002; Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-06-21 10.3390/app15137002
  102. Dual-purpose star tracker and space debris detector: miniature instrument for small satellites B.N. Arribas, J.G. Maia, J.P. Castanheira, J. Filho, R. Melício, H. Onderwater, P. Gordo, R.P. Duarte, A.R.R. Silva Journal of Sensor and Actuator Networks, Vol. 14, N.º 4, 75, pp. 1–20, July 2025 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-15 10.3390/jsan14040075
  103. Orbit and atmosphere of HIP 99770 b through the eyes of VLTI/GRAVITY Winterhalder, T.O.,Kammerer, J.,Lacour, S.,Mérand, A.,Nowak, M.,Stolker, T.,Balmer, W.O.,Marleau, G.-D.,(...),Yazici, S. A&A, 700, A4 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-28 10.1051/0004-6361/202554766
  104. Direct imaging discovery of a young giant planet orbiting on Solar System scales Stolker, T.,Samland, M.,Waters, L.B.F.M.,van den Ancker, M.E.,Balmer, W.O.,Lacour, S.,Sitko, M.L.,Wang, J.J.,(...),Yazici, S A&A Volume 700, August 2025 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-07-29 10.1051/0004-6361/202555064
  105. Spiking rate and latency encoding with resonant tunneling diode neuron circuits and design influences Giovanni Donati, Dafydd Owen-Newns, Joshua Robertson, Xavier Porte, Ekaterina Malysheva, Jose Figueiredo, Bruno Romeira, Victor Dolores-Calzadilla, Antonio Hurtado Phys. Rev. Applied 24, 024041 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-18 10.1103/n41r-3t9v
  106. In-house Production of POFs using Electrospinning, Melt-Electrospinning and Melt-Spinning for Cell-level Resolution Radiation Detectors Cristiana M. C. Rodrigues, Luis Peralta, Antonio P. Goncalves, Jose M. Figueiredo, Duarte R. Guerreiro, Jorge M. Sampaio, Joao G. Saraiva Journal of Applied Polymer Science 142, no. 48 (2025): e57868 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-19
  107. Comparing observations of closely located JUICE and STEREO-A spacecraft during the widespread 13 May 2024 solar energetic particle event L. Rodríguez-García, ..., M. Pinto, ..., F. Santos, et al. A&A 701, A13 (2025) Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-02 10.1051/0004-6361/202555301
  108. Isoprene chemistry under upper-tropospheric conditions Douglas M. Russell et al. (67 authors) Nat. Commun. 16 (2025) 8555 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-09-29 10.1038/s41467-025-64229-w
  109. Constraints on the Orbit of the Young Substellar Companion GQ Lup B from High-resolution Spectroscopy and VLTI/GRAVITY Astrometry Vidya Venkatesan, .. Antonio Amorim, ..., et al The Astrophysical Journal, Volume 993, Number 1 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-10-24 10.3847/1538-4357/ae0c15
  110. Spatiotemporal Evolution of the 2022 March Interplanetary Coronal Mass Ejection Revealed by Multipoint Observations of Forbush Decreases Gaku Kinoshita, Beatriz Sanchez-Cano, Yoshizumi Miyoshi, Laura Rodríguez-García, Emilia Kilpua, Benoit Lavraud, Mathias Rojo, Marco Pinto, Yuki Harada, Go Murakami, Yoshifumi Saito, Shoichiro Yokota, Daniel Heyner, David Fischer, Nicolas Andre, and Kazuo Yoshioka The Astrophysical Journal: Volume 997, Number 1, January 13, 2026 Jrn-Dir Articles in international journals (with direct contribution from team) published 2026-01-13 10.3847/1538-4357/ae1834
  111. Discriminating sub-TeV gamma and hadron-induced showers through their footprints R. Conceição, A. Guillén, B.S. González, M. Pimenta, B. Tomé Phys.Rev.D 111 (2025) 4, 043047 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-02-24 10.1103/PhysRevD.111.043047
  112. Identification of low energy neutral and charged cosmic ray events in large wide field observatories L Apolinário, P. Assis, P. Brogueira, R. Conceição, P. J. Costa, G. La Mura, M. Pimenta, B. Tomé JCAP 04 (2025) 029 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-10 10.1088/1475-7516/2025/04/029
  113. Azimuthal fluctuations and number of muons at the ground in muon depleted proton air showers at PeV energies A. Bakalová, R. Conceição, L. Gibilisco, V. Novotny, M. Pimenta, B. Tomé, J. Vícha Phys.Rev.D 111 (2025) 8, 083036 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-04-22 10.1103/PhysRevD.111.083036
  114. Enhancing neutrino reconstruction in water-Cherenkov air shower arrays using multi-photosensors J. Alvarez-Muniz, R. Colalillo, R. Conceicao, B. S. Gonzalez, V. M. Grieco, F. Guarino, M. Pimenta, B. Tome, M. Waqas Eur. Phys. J. C 85 (2025) 842 Jrn-Dir Articles in international journals (with direct contribution from team) published 2025-08-05 10.1140/epjc/s10052-025-14559-2

Proceeding in international conferences

  1. Joaquim Silva e José Cardoso e CunhaTitle: "A Scalable Model for Frequency Distribution of Low Occurrence Multi-words Towards Handling Very Large Spectrum of Text Corpora Sizes" ECML PKDD 2025 15 a 19 de Setembro, no Porto, Portugal
  2. Rodrigues, M. I. P., S. Wang, and C. Guedes Soares. "Analysis of forward speed influence on vertical bending moment uncertainty in S175 containerships." In Innovations in the Analysis and Design of Marine Structures, pp. 29-37. CRC Press, 2025.
  3. Li, H., Wang, S., Guedes Soares, C., 2026. Physically-Constrained Identification of Hydrodynamics for a Circular Cylinder Near the Free-Surface. 8th International Conference on Maritime Technology and Engineering, Lisbon, Portugal.
  4. L. Cipriani, V. Sagun, K. V. Staykov, D. D. Doneva, S. S. Yazadjiev, Differentially rotating neutron stars with dark matter cores, under review in PRD, Preprint arXiv: 2512.05898 [astro-ph.HE] (2025) 11p.
  5. C. Gärtlein, O. Ivanytskyi, V. Sagun, I. Lopes, Color-superconducting quarkyonic matter, Phys. Rev. D 113, 3, 034017 (2026);
  6. E. Giangrandi, H. R. Rüter, N. Kunert, M. Emma, A. Abac, A. Adhikari, T. Dietrich, V. Sagun, W. Tichy, C. Providência, Numerical relativity simulations of dark matter admixed binary neutron stars, under review in PRD, Preprint arXiv: 2504.20825 [astro-ph.HE] (2025) 22p.
  7. C. Gärtlein, V. Sagun, O. Ivanytskyi, D. Blaschke, I. Lopes, Fastest spinning millisecond pulsars: indicators for quark matter in neutron stars?; Phys. Rev. D 111, 123021 (2025);
  8. O. Ivanytskyi, Asymptotically conformal CFL quark matter within a nonlocal chiral quark model, Phys. Rev. D 111, 034004 (2025); Phys. Rev. D 111, 079904 (2025) (erratum).

Posters (internation meetings)

  1. Marques, M, García, F, Santos, E, Baylina, N, Villela, H, Peixoto, RS, Keller-Costa, T, & Costa, R. “Climate change impacts on octocorals: emergent pathogens, symbiont preservation and probiotic solutions”. FEMS Micro. Milan, Italy. July 14th-17th

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

  1. Edoardo Giangrandi, The effects of dark matter on neutron stars and on their merger dynamics, PhD thesis at the University of Coimbra, October 2025.
  2. Filipe Caetano, La Inteligencia Artificial en el contexto de la Contabilidad: Desarrollo de una plataforma colaborativa, PhD thesis of Universidad de Granada
  3. Afonso, F. (2025). How can the Ecosystem Service Approach provide insights for Sustainable Management of Portuguese Estuaries? Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa.
  4. Biguino, B. (2025). Climate Change in the Western Iberian Coast: from the sea to estuaries. Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa. 
  5. Vieira S. (2025). Benthic biodiversity and bottom-up effects based on food web attributes in response to sediment condition in Sado estuary (SW Coast, Portugal), Universidade de Évora. http://hdl.handle.net/10174/40145

Ongoing

Master Thesis

Finished

  1. Carvalho, I. C. (2025). Clinical reasoning tasks perceptions and associated variables in medical students: A cross-sectional study [Master’s dissertation, University of Lisbon].
  2. Enzo Loschiavo Ferreira Sekler: "Dissertation Title: Effect of spacing on wake-induced vibrations between a fixed and an oscillating circular cylinder", 09-12-2025, Instituto Superior Técnico
  3. Computational tools to assess adaptation and resilience to thermal stress in intertidal fish: a functional genomics approach (Supervisor of Andrea Duque) Biologia Computacional e Bioinformática (Master) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Ongoing

1.Gabriele Meo, The Application of Artificial Intelligence in Optimising Food Processing in the framework of new tendencies of sustainability, Master thesis of Universita degli Studi di Bari Aldo Moro and Instituto Politécnico da Guarda (ending 2026)

  1. Vito Riggieri, The digitalisation of agri-food supply chains, with emphasis on the automation of traceability and quality control using sensor-equipped machinery, Master thesis of Universita degli Studi di Bari Aldo Moro and Instituto Politécnico da Guarda (ending 2026)

Patents

Datasets

2024

International articles with referee

  1. Melnik, T., Sinval, J., Pinho, V. D. de, Junior, J. A. S. H., Oliveira, M. da S., & Lopes, F. M. (2025). Knowledge and use of evidence-based practice in psychology in the clinical practice of Brazilian psychologists: A cross-sectional study. Healthcare, 13(4), 1–18. https://doi.org/10.3390/healthcare13040431

  2. Nevado B, Atchison GW, Bridges EL, Orzell S, Filatov D, Hughes CE. Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Paplionoideae) in Florida. Molecular Ecology (accepted).

  3. Andrade, R., Laranjeiro, N., & Vieira, M. (2024). BugHub: A Large Scale Issue Report Dataset. In 19th European Dependable Computing Conference - EDCC, accepted for publication. Leuven.

  4. Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Correlates of burnout and dropout intentions in medical students: A cross-sectional study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.08.003

  5. "Leveraging LLMs for On-the-fly Instruction Guided Image Editing" dos autores Rodrigo Santos, João Silva e António Branco EPIA 2024, International Conference on Artificial Intelligence (https://doi.org/10.48550/arXiv.2403.08004)

  6. Morais, I., Carneiro, F. A., Sinval, J., Costa, P. A., & Leal, I. (2024). The Walsh Family Resilience Questionnaire: Validity evidence from Portugal. Family Relations. https://doi.org/10.1111/fare.13078

  7. Sinval, J., Oliveira, P., Novais, F., Almeida, C. M., & Telles-Correia, D. (2024). Exploring the impact of depression, anxiety, stress, academic engagement, and dropout intention on medical students’ academic performance: A prospective study. Journal of Affective Disorders. https://doi.org/10.1016/j.jad.2024.09.116

  8. Melo, L. E. A. de, Sinval, J., & Isler, C. A. (2025). Prospective avenues in travel behavior research supported by the cognitive dissonance theory: A scoping review. Transportation Research Part F: Traffic Psychology and Behaviour, 109, 501–519. https://doi.org/10.1016/j.trf.2024.12.022

  9. Galamba, N., Sickle Cell Hemoglobin “Drugged” with Cyclic Peptides is Aggregation Incompetent, J. Phys. Chem. B, 128, 36, 8662, 2024 URL: https://doi.org/10.1021/acs.jpcb.4c03805

  10. Martins, G., Galamba, N., Wild Type α-Synuclein Structure and Aggregation: A Comprehensive Coarse-Grained and All-Atom Molecular Dynamics Study, J. Chem. Inf. Model., 64, 15, 6115, 2024 URL: https://doi.org/10.1021/acs.jcim.4c00965

  11. Gomes I., Martins, G., Galamba N., Essential Dynamics of Ubiquitin in Water and in a Natural Deep Eutectic Solvent, Phys. Chem. Chem. Phys., 26, 18244, 2024 URL: htps://pubs.rsc.org/en/Content/ArticleLanding/2024/CP/D4CP01773K

  12. Iana Lychko; Cátia Lopes Soares; Barbosa, A.J.M.; Tomás Rosa Calmeiro; Rodrigo Ferrão de Paiva Martins; Ana Margarida Gonçalves Carvalho Dias; Ana Cecília Afonso Roque. "Kinetics of charge-dependent reversible condensation of reflectin nanostructures". Materials Advances (2024): https://doi.org/10.1039/D4MA00788C.

  13. In silico identification of novel PqsD inhibitors: promising molecules for quorum sensing interference in Pseudomonas aeruginosa – Tatiana F. Vieira; Nuno M. F. S. A. Cerqueira; Manuel Simões; Sérgio F. Sousa – Molecular Systems Design & Engineering – 2024 – 10.1039/D3ME00107E

  14. The fungicide cymoxanil impairs respiration in Saccharomyces cerevisiae via cytochrome oxidase inhibition – Filipa Mendes; Cátia Santos-Pereira; Tatiana F. Vieira; Mélanie Martins Pinto; Bruno B. Castro; Sérgio F. Sousa; Maria João Sousa; Anne Devin; Susana Chaves – FEBS Letters – 2024 – 10.1002/1873-3468.14907

  15. Dual action of benzaldehydes: Inhibiting quorum sensing and enhancing antibiotic efficacy for controlling Pseudomonas aeruginosa biofilms – Miguel M. Leitão; Tatiana F. Vieira; Sérgio F. Sousa; Fernanda Borges; Manuel Simões; Anabela Borges – Microbial Pathogenesis – 2024 – 10.1016/j.micpath.2024.106663

  16. Montelukast and cefoperazone act as antiquorum sensing and antibiofilm agents against Pseudomonas aeruginosa – Tatiana F Vieira; Miguel M Leitão; Nuno M F S A Cerqueira; Sérgio F Sousa; Anabela Borges; Manuel Simões – Journal of Applied Microbiology – 2024 – 10.1093/jambio/lxae088

  17. In silico-guided discovery and in vitro validation of novel sugar-tethered lysinated carbon nanotubes for targeted drug delivery of doxorubicin – Fábio G. Martins; Chanchal Kiran Thakur; Chandrabose Karthikeyan; Subhasmita Bhal; Chanakya Nath Kundu; N. S. Hari Narayana Moorthy; Sérgio F. Sousa – Journal of Molecular Modeling – 2024 https://doi.org/10.1007/s00894-024-06061-5

  18. Protocol for in silico characterization of natural-based molecules as quorum-sensing inhibitors – Susana Fernandes; Mariana Sousa; Fábio G. Martins; Manuel Simões; Sérgio F. Sousa – STAR Protocols – 2024 – http://dx.doi.org/10.1016/j.xpro.2024.103367

  19. Protocolo de Bioinformática para ensino de estrutura e função de proteínas. Roggero, A., Nicodemo, I., Annunciato, I., da Silva Fernandes, P. H., Mota, V., & Toyama, M. H. (2024). Revista de Ensino de Bioquímica, 22(2), 119-136. https://doi.org/10.16923/reb.v22i2.1088

  20. Structural insights of an LCP protein–LytR–from Streptococcus dysgalactiae subs. dysgalactiae through biophysical and in silico methods - J Paquete-Ferreira, F Freire, HS Fernandes, J Muthukumaran, J Ramos, et al. Frontiers in Chemistry 12, 1379914, 2024 https://doi.org/10.3389/fchem.2024.1379914 Evaluation of the impact of two C5 genetic variants on C5-eculizumab complex stability at the molecular level - VP Peixoto, C Prudêncio, M Vieira, SF Sousa, Journal of Biomolecular Structure and Dynamics, 1-10, 2024, https://doi.org/10.1080/07391102.2024.2331091

  21. Exploiting Locusta migratoria as a source of bioactive peptides with anti-fibrosis properties using an in silico approach (vol 15, pg 493, 2024) CSS Teixeira, R Biltes, C Villa, SF Sousa, J Costa, IM Ferreira, I Mafra - FOOD & FUNCTION 15 (5), 2773-2773, https://doi.org/10.1039/D3FO04246D

  22. Glucocorticoid receptor-dependent therapeutic efficacy of tauroursodeoxycholic acid in preclinical models of spinocerebellar ataxia type 3 - S Duarte-Silva, JD Da Silva, D Monteiro-Fernandes, MD Costa, SF Sousa et al. The Journal of clinical investigation 134 (5) (2024) 10.1172/JCI162246

  23. Substitution models of protein evolution with selection on enzymatic activity D Ferreiro, R Khalil, SF Sousa, M Arenas, Molecular Biology and Evolution 41 (2), 2024 msae026 https://doi.org/10.1093/molbev/msae026

  24. Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation - R Soares, L Azevedo, V Vasconcelos, D Pratas, SF Sousa, J Carneiro - Journal of Chemical Information and Modeling 64 (24), 9576-9593 https://doi.org/10.1021/acs.jcim.4c00995

  25. Advances in structure-based drug design targeting membrane protein markers in prostate cancer - Batista- Silva J.P., Gomes D., Sousa S.F., Sousa Â., Passarinha L.A. - Drug Discovery Today, 2024, 29(9): 104130 https://doi.org/10.1016/j.drudis.2024.104130

  26. Structural insights and photophysical properties of mononuclear and pentanuclear Zn(II) acetate complexes with pyridyl-based thiazolyl-hydrazones - Araškov J.B., Garcia-Sosa A.T., Višnjevac A., Sousa S.F., Holló B.B., Uğuz Ö., Koca A., Monge M., Rodríguez-Castillo M., López-de-Luzuriaga J.M., Todorović T.R., Filipović N.R. - Polyhedron, 2024, 262: 117162 https://doi.org/10.1016/j.poly.2024.117162

  27. In silico analysis of aptamer-RNA conjugate interactions with human transferrin receptor Vasconcelos D., Pina A., Habib N., Sousa S.F. - Biophysical Chemistry, 2024, 314: 107308 https://doi.org/10.1016/j.bpc.2024.107308

  28. LC-ESI-UHR-QqTOF-MS/MS profiling and anti-inflammatory potential of the cultivated Opuntia ficus-indica (L.) Mill. and the wild Opuntia stricta (Haw.) Haw. fruits from the Algerian region - Zeghbib W., Boudjouan F., Carneiro J., Oliveira A.L.S., Sousa S.F., Pintado M.E., Ourabah A., Vasconcelos V., Lopes G. - Food Chemistry, 2024, 460: 140414 https://doi.org/10.1016/j.foodchem.2024.140414

  29. Design, synthesis, and pharmacological evaluation of heteroaryl thiol-linked kojic acid derivatives as a novel class of acetylcholinesterase inhibitors for Alzheimer’s disease therapy - Singh M., Karthikeyan C., Waiker D.K., Tiwari A., Shrivastava S.K., Sousa S.F., Kiriwan D., Martins F.G., Moorthy N.S.H.N. - 3 Biotech, 2025, 15(5): 134 https://doi.org/10.1007/s13205-025-04295-5

  30. A comprehensive update of genotype–phenotype correlations in PMM2-CDG: insights from molecular and structural analyses - Oliveira T., Ferraz R., Azevedo L., Quelhas D., Carneiro J., Jaeken J., Sousa S.F. - Orphanet Journal of Rare Diseases, 2025, 20(1): 207 https://doi.org/10.1186/s13023-025-03669-5

  31. Design and biological evaluation of 2-phenylquinoxaline carbonyl piperazine derivatives as novel FASN inhibitors with anticancer activity - S Singh, S Paul, FG Martins, SF Sousa, CN Kundu, C Karthikeyan, - Bioorganic Chemistry, 2025, 10869 https://doi.org/10.1016/j.bioorg.2025.108697

  32. Two cinnamic acid derivatives as inhibitors of Pseudomonas aeruginosa las and pqs quorum-sensing systems: Impact on biofilm formation and virulence factors - MM Leitão, ASC Gonçalves, SF Sousa, F Borges, M Simões, A Borges, Biomedicine & Pharmacotherapy 2025, 187, 118090 https://doi.org/10.1016/j.biopha.2025.118090

  33. Gonçalves, C., Moutinho Cabral, I., Alves de Matos, A.P., Grosso, A.R. and Costa, P.M. (2024). Transcriptome profiling of the posterior salivary glands of the cuttlefish Sepia officinalis from the Portuguese West coast. Front. Mar. Sci. 11, 1362824. doi:10.3389/fmars.2024.1362824

  34. Martins, C., Carvalho, L.M., Moutinho Cabral, I., Saúde, L., Dreij, K. and Costa, P.M. (2024). A mechanistic study on the interaction effects between legacy and pollutants of emerging concern: A case study with B[a]P and diclofenac. Environ Pollut. 363, 125189. doi:10.1016/j.envpol.2024.125189

  35. Rodrigo, A.P., Moutinho Cabral, I., Alexandre, A. and Costa, P.M. (2024). Exploration of toxins from a marine annelid: An analysis of phyllotoxins and accompanying bioactives. Animals (Basel). 14, 635. doi:10.3390/ani14040635

  36. Feature Selection Techniques for CR Isotope Identification with the AMS-02 Experiment in Space Marta Borchiellini, Leandro Mano, Fernando Barão e Manuels Vecchi Particles 2024, 7(2), 417-434 2024-04-11 https://doi.org/10.3390/particles7020024

  37. Properties of Cosmic Deuterons Measured by the Alpha Magnetic Spectrometer AMS Collaboration (248 authors) Phys. Rev. Lett. 132 (2024) 261001 10.1103/PhysRevLett.132.261001

  38. Probing the 𝐶𝑃 nature of the top–Higgs Yukawa coupling in 𝑡 ̄ 𝑡𝐻 and 𝑡𝐻 events with 𝐻 → 𝑏 ̄ 𝑏 decays using the ATLAS detector at the LHC ATLAS Collaboration (A. L. Carvalho, E. Gouveia, R. Gonçalo, A. Onofre, et al) Phys. Lett. B 849 (2024) 138469 10.1016/j.physletb.2024.138469

  39. Simulation-based inference in the search for CP violation in leptonic WH production R. Barrué, P. Conde Muíño, V. Dao, R. Santos J. High Energ. Phys. 2024, 14 2024-03-13 https://doi.org/10.1007/JHEP04%282024%29014

  40. Combination of searches for heavy spin-1 resonances using 139 fb−1 of proton-proton collision data at \sqrt{s}=13 TeV with the ATLAS detector ATLAS Collaboration (Inês Ochoa et al) J. High Energy Phys. 4 (2024) 118 10.1007/JHEP04(2024)118

  41. The ATLAS Experiment at the CERN Large Hadron Collider: A Description of the Detector Configuration for Run 3 ATLAS Collaboration (R. Pedro et al.) J. Instrum. 19 (2024) P05063 2023-05-26 10.1088/1748-0221/19/05/P05063

  42. Search for invisible particles produced in association with single top quarks in proton-proton collisions at s√=13 TeV with the ATLAS detector ATLAS Collaboration (M. Barros, N. Castro, R. Pedro et al. ) JHEP 05 (2024) 263 10.1007/JHEP05%282024%29263

  43. Search for singly produced vector-like top partners in multilepton final states with 139 $mathrm{fb}^{-1}$ of $pp$ collision data at $sqrt{s} = 13$ TeV with the ATLAS detector ATLAS Collaboration (N. Castro, T. Vale) Phys. Rev. D 109 (2024) 112012 2024-06-11 10.1103/PhysRevD.109.112012

  44. The ATLAS trigger system for LHC Run 3 and trigger performance in 2022 ATLAS Collaboration (R. Barrué, P. Conde Muíño, I. Ochoa et al. ) 2024 JINST 19 P06029 2024-05-28 10.1088/1748-0221/19/06/P06029

  45. Asymmetries in invisible dark matter mediator production associated with tt final states Esteban Chalbaud, Rui Miguel Silva, António Onofre, Ricardo Gonçalo, Miguel C. N. Fiolhais Phys. Rev. D 110, 076016 10.1103/PhysRevD.110.076016

  46. Operation and performance of the ATLAS tile calorimeter in LHC Run 2 ATLAS Collaboration (TileCal/LIP group et al.) Eur. Phys. J. C 84 (2024) 1313 2024-09-01 10.1140/epjc/s10052-024-13151-4

  47. The Pierre Auger Observatory Open Data The Pierre Auger Collaboration Eur. Phys C. 2024-09-30

  48. Ground observations of a space laser for the assessment of its in-orbit performance The Pierre Auger Collaboration Optica 11 (2024) 263-272 2023-12-05 doi.org/10.1364/OPTICA.507619

  49. Proton-air interactions at ultra-high energies in muon-depleted air showers with different depths L.Cazon, R.Conceição, M.A.Martins, F.Riehn Phys. Lett. B 859 (2024) 139115 2024-11-01 https://doi.org/10.1016/j.physletb.2024.139115

  50. Study of central exclusive production processes by proton-proton collisions at 13 TeV with the CMS experiment Matteo Pisano (for the CMS Collaboration) Nuovo Cim. C 47 (2024) 81 2024-03-18 10.1393/ncc/i2024-24081-4

  51. Development of the CMS detector for the CERN LHC Run 3 CMS Collaboration (2535 authors) JINST 19 (2024) 05, P05064 2023-11-06 10.1088/1748-0221/19/05/P05064

  52. Search for central exclusive production of top quark pairs in proton-proton collisions at 13 TeV with tagged protons CMS and TOTEM collaborations JHEP 06 (2024) 187 2024-05-20

  53. A Novel Diamond-like Carbon based photocathode for PICOSEC Micromegas detectors X.Wang, M.Gallinaro et al. J. Instrum. 19 (2024) P08010 2024-08-01 10.1088/1748-0221/19/08/P08010

  54. Measurement of the polarizations of prompt and non-prompt J/psi and psi(2S) mesons produced in pp collisions at 13 TeV CMS collaboration Phys. Lett. B 858 (2024) 139044 2024-10-07

  55. Optimization of LYSO crystals and SiPM parameters for the CMS MIP timing detector A.Boletti, M.Gallinaro, J.Varela et al. JINST 19 (2024) 12, P12020 2024-10-11

  56. PICOSEC-Micromegas Detector, an innovative solution for Lepton Time Tagging A. Kallitsopoulou, M.Gallinaro et al. Nucl.Instrum.Meth.A 1069 (2024) 169920 2024-10-16

  57. TOFHIR2: the readout ASIC of the CMS barrel MIP Timing Detector E. Albuquerque et al. JINST 19 (2024) 05, P05048 2024-10-31 10.1088/1748-0221/19/05/P05048

  58. Constraints On Covariant WIMP-Nucleon Effective Field Theory Interactions from the First Science Run of the LUX-ZEPLIN Experiment J. Aalbers et al. (LZ Collaboration) Phys. Rev. Lett. 133, 221801 (2024) https://doi.org/10.1103/PhysRevLett.133.221801

  59. Two-neutrino double electron capture of 124Xe in the first LUX-ZEPLIN exposure J. Aalbers et al. Journal of Physics G: Nuclear and Particle Physics, Volume 52, Number 1 (2024) 2024-11-08 10.1088/1361-6471/ad9039

  60. A next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. Journal of Physics G- Nuclear and particle Physics 50, 013001 (2023) 2024-07-26 10.1088/1361-6471/ac841a

  61. Event generators for high-energy physics experiments J.M. Campbell, et. al. SciPost Phys. 16 (2024) 5, 130 10.21468/SciPostPhys.16.5.130

  62. Software Quality Assurance as a Service: Encompassing the Quality Assessment of Software and Services Samuel Bernardo, Pablo Orviz, Mario David, Jorge Gomes, David Arce, Diana Naranjo, Ignacio Blanquer, Isabel Campos, Germán Moltó, Joao Pina Future Generation Computer Systems, 2024, ISSN 0167-739X 2024-03-12 10.1016/j.future.2024.03.024

  63. Event-by-Event Direction Reconstruction of Solar Neutrinos in a High Light-Yield Liquid Scintillator A. Allega et al., The SNO+ Collaboration Phys. Rev. D 109, 072002 https://journals.aps.org/prd/abstract/10.1103/PhysRevD.109.072002

  64. Measurement of the 8B Solar Neutrino Flux Using the Full SNO+ Water Phase A. Allega et al. (SNO+ Collaboration) Phys. Rev. D 110, 122003 2024-08-28 10.1103/PhysRevD.110.122003

  65. Initial measurement of reactor antineutrino oscillation at SNO+ A. Allega et al (SNO+ Collaboration) Eur. Phys. J. C 85, 17 (2025) 2024-12-05 https://doi.org/10.1140/epjc/s10052-024-13687-5

  66. Electromagnetic Transition Form Factors of Baryon Resonances G. Ramalho, M.T Peña Prog.Part.Nucl.Phys. 136 (2024) 104097 https://doi.org/10.1016/j.ppnp.2024.104097

  67. Simple high-accuracy method for solving bound-state equations with the Cornell potential in momentum space A. Stadler, E. P. Biernat, and V. Valverde Phys. Rev. D 110, 114039 (2024). 2024-12-31

  68. Electromagnetic |GE/GM| ratios of hyperons at large timelike q2 G. Ramalho, M.T. Peña, K. Tsushima, Myung-Ki Cheoun Phys.Lett.B 858 (2024) 139060 2024-12-31 https://doi.org/10.1016/j.physletb.2024.139060

  69. Natural linewidths of Cu K1,2 spectra obtained with an antiparallel double-crystal x-ray spectrometer Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, Ł. Syrocki, K. Słabkowska, M. Polasik, J. P. Marques, and F. Parente Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, Ł. Syrocki, K. Słabkowska, M. Polasik, J. P. Marques, and F. Parente, “Natural linewidths of Cu K1,2 spectra obtained with an antiparallel double-crystal x-ray spectrometer”. J. Anal. At. Spectrom. 39, 1094 (2024). 2024-02-23 https://doi.org/10.1039/d3ja00367a

  70. Databases of L-shell X-ray intensity ratios for various elements after photon excitation A. Zidi, A. Kahoul, J. P. Marques, S. Daoudi, J. M. Sampaio, F. Parente, A. Hamidani, S. Croft, A. Favalli, Y. Kasri, K. Amari, B. Berkani 7. A. Zidi, A. Kahoul, J. P. Marques, S. Daoudi, J. M. Sampaio, F. Parente, A. Hamidani, S. Croft, A. Favalli, Y. Kasri, K. Amari, B. Berkani, “Databases of L-shell X-ray intensity ratios for various elements after photon excitation”. At. Nucl. Data Tables 157, 101645 (2024) 2024-02-02 https://doi.org/10.1016/j.adt.2024.101645

  71. Semi-Empirical and Theoretical calculation of L1, L2, and L3 Subshell Fluorescence Yields K. Meddouh, A. Kahoul, J. M. Sampaio, S. Daoudi, J. P. Marques, F. Parente, N.Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani K. Meddouh, A. Kahoul, J. M. Sampaio, S. Daoudi, J. P. Marques, F. Parente, N.Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani, “Semi-Empirical and Theoretical calculation of L1, L2, and L3 Subshell Fluorescence Yields”. J.Quant. Sprctr. & Rad. Transf. 322, 109013 (2024). 2024-04-16 https://doi.org/10.1016/j.jqsrt.2024.109013

  72. Measurement of nuclear interaction cross sections towards neutron-skin thickness determination L. Ponnath, T. Aumann, C. A. Bertulani, et al. Phys. Lett. B855, 138780 (2024) 10.1016/j.physletb.2024.138780

  73. Experimental K-shell fluorescence cross sections for elements in the atomic number range 16 ≤ Z ≤ 92 by photon impact at various energies K. Amari, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, B. Berkani. K. Amari, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, B. Berkani. “Experimental K-shell fluorescence cross sections for elements in the atomic number range 16 ≤ Z ≤ 92 by photon impact at various energies”. Atomic Data and Nuclear Data Tables 159, (2024) 101662. 2024-05-22 https://doi.org/10.1016/j.adt.2024.101662

  74. Strong coupling effects on near-barrier 15C + 208Pb elastic scattering V.G. Távora, J.D. Ovejas, I. Martel, et al. Phys. Lett. B 855 (2024) 138770 10.1016/j.physletb.2024.138770

  75. Vacancy transfer probability parameters: database and a new empirical value for elements in the atomic number range 16 ≤ Z ≤ 92 B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. 3. B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. “Vacancy transfer probability parameters: database and a new empirical value for elements in the atomic number range 16 ≤ Z ≤ 92”. Radiation Physics and Chemistry 225, (2024) 112106. 2024-12-04 https://doi.org/10.1016/j.radphyschem.2024.112106

  76. Investigating Empirical and Theoretical Calculations for Intensity Ratios of L-Shell X-ray transitions in atoms with 39 ≤ Z ≤ 94 A. Zidi, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, K. Amari, B. Berkani A. Zidi, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, K. Amari, B. Berkani. «Investigating Empirical and Theoretical Calculations for Intensity Ratios of L-Shell X-ray transitions in atoms with 39 ≤ Z ≤ 94”. Journal of Electron Spectroscopy and Related Phenomena 275, (2024) 147473. 2024-07-10 https://doi.org/10.1016/j.elspec.2024.147473

  77. Empirical calculation of K-shell fluorescence cross sections for elements in the atomic range 16≤Z≤92 by photon effects ranging from 5.46 to 123.6 keV (Three-dimensional formulae) K. Amari, A. Kahoul, J.M. Sampaio, Y. Kasri, J.P. Marques, F. Parente, A. Hamidani, S. Croft, A. Favalli, S. Daoudi, A. Zidi, B. Berkani K. Amari, A. Kahoul, J.M. Sampaio, Y. Kasri, J.P. Marques, F. Parente, A. Hamidani, S. Croft, A. Favalli, S. Daoudi, A. Zidi, B. Berkani, “Empirical calculation of K-shell fluorescence cross sections for elements in the atomic range 16≤Z≤92 by photon effects ranging from 5.46 to 123.6 keV (Three-dimensional formulae)”. Physica Scripta 99, (2024) 105402. 2024-08-21 https://doi.org/10.1088/1402-4896/ad720e

  78. Measurement of differential collisional excitation cross sections for the Kα emission of He-like oxygen Filipe Grilo, Chintan Shah, José Marques, José Paulo Santos, José R. Crespo López-Urrutia, and Pedro Amaro. Filipe Grilo, Chintan Shah, José Marques, José Paulo Santos, José R. Crespo López-Urrutia, and Pedro Amaro.  « Measurement of differential collisional excitation cross sections for the Kα emission of He-like oxygen”. Physical Review A110, 042827(2025). 2024-09-30 10.1103/PhysRevA.110.042827

  79. Relativistic and semi-theoretical calculations of K-shell to L-shell/subshell vacancy transfer probabilities . Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari B. Berkani, A. Kahoul, J.P. Marques, S. Daoudi, J.M. Sampaio, F. Parente, A. Hamidani, S. Croft, A.Favalli, Y. Kasri, A. Zidi, K. Amari. “Relativistic and semi-theoretical calculations of K-shell to L-shell/subshell vacancy transfer probabilities”. Spectrochimica Acta Part B: Atomic Spectroscopy 224, (2025) 107089. https://doi.org/10.1016/j.sab.2024.107089 2024-11-26 https://doi.org/10.1016/j.sab.2024.107089

  80. Multislit gamma camera for external beam radiotherapy assistance: Experimental proof of concept H Simões, L Lopes, PJBM Rachinhas, P Crespo ARNM 2024, 2(3), 4099 2024-08-23 10.36922/arnm.4099

  81. Final COMPASS results on the transverse-spin-dependent azimuthal asymmetries in the pion-induced Drell-Yan process G.D. Alexeev et al. (COMPASS Coll.) Phys. Rev. Lett. 133, 071902 (2024) 2024-05-14 10.1103/PhysRevLett.133.071902

  82. Jet quenching in anisotropic flowing matter Matvey V. Kuzmin, Xoán Mayo López, Andrey V. Sadofyev Phys.Rev.D 109 (2024) 1, 014036 https://doi.org/10.1103/PhysRevD.109.014036

  83. Jet substructure observables for jet quenching in Quark Gluon Plasma: a Machine Learning driven analysis Miguel Crispim Romão, José Guilherme Milhano, Marco van Leeuwen SciPost Phys. 16, 015 (2024) 2023-12-21

  84. Picturing QCD jets in anisotropic matter: from jet shapes to Energy Energy Correlators João Barata, José Guilherme Milhano, Andrey V. Sadofyev Eur. Phys. J. C (2024) 84:174 10.1140/epjc/s10052-024-12514-1

  85. Von Neumann entropy and Lindblad decoherence in the high energy limit of strong interactions G. Chachamis, A. Sabio Vera 10.1103/PhysRevD.109.054015

  86. Axions and superfluidity in Weyl semimetals Emil Mottola, Andrey V. Sadofyev, Andreas Stergiou Phys.Rev.B 109 (2024) 13, 134512 https://doi.org/10.1103/PhysRevB.109.134512

  87. Exploring the time axis within medium-modified jets Liliana Apolinário, Pablo Guerrero-Rodríguez, Korinna Zapp Eur.Phys.J.C 84 (2024) 7, 672 10.1140/epjc/s10052-024-13048-2

  88. Jet substructure Liliána Apolinário, Yang-Ting Chien, Leticia Cunqueiro Mendez Int.J.Mod.Phys.E 33 (2024) 07, 2430003 10.1142/S0218301324300030

  89. Dynamics of particle-particle correlations and the ridge effect in proton-proton collisions G. Calé, G. Chachamis, A. Sabio Vera https://doi.org/10.1103/PhysRevD.110.074009

  90. Jet quenching in the glasma phase: Medium-induced radiation João Barata, Sigtryggur Hauksson, Xoán Mayo López, Andrey V. Sadofyev Phys.Rev.D 110 (2024) 9, 094055 https://doi.org/10.1103/PhysRevD.110.094055

  91. In-medium gluon radiation spectrum with all-order resummation of multiple scatterings in longitudinally evolving media Carlota Andres, Liliana Apolinário, Fabio Dominguez, Marcos Gonzalez Martinez JHEP 11 (2024) 025 10.1007/JHEP11(2024)025

  92. Multijet event shape variables for Mueller Navelet jet topologies C. Baldenegro, G. Chachamis, M. Kampshoff, M. Klasen, J. G. Milhano, C. Royon, A. Sabio Vera Phys.Rev.D 110 (2024) 11, 114027 2024-11-23 https://doi.org/10.1103/PhysRevD.110.114027

  93. Systematic Study on the Quality of Flux-grown Al2O3 Single Crystals for Dosimetry Applications Rodrigues, C., Saraiva, J. G. M., Gonçalves, A. P., Peralta L SSS160_107835 2024-12-10 10.1016/j.solidstatesciences.2025.107835

  94. Utility of realistic microscopy-based cell models in simulation studies of nanoparticle-enhanced photon radiotherapy Joana Antunes, Catarina I G Pinto, Maria Paula Cabral Campello, Pedro Santos, Filipa Mendes, António Paulo and Jorge M Sampaio Biomedical Physics & Engineering Express 10 (2024): 025015 2024-01-18 10.1088/2057-1976/ad2020

  95. Development of a plastic scintillating optical fibers array dosimeter for radiobiology D.R. Guerreiro ,J.G. Saraiva , M.J. Borges, J.M. Sampaio and L. Peralta J. Inst. 19 P05006 2024-03-25 10.1088/1748-0221/19/05/P05006

  96. A primary simulation study of scintillating fibre dosimetry for a proton minibeam D.R. Guerreiro, B.C. Alves, C. Rodrigues, J.G. Saraiva, L. Peralta, J.M. Sampaio Radiation Physics and Chemistry Volume 224 (2024), 112102 10.1016/j.radphyschem.2024.112102

  97. Novel Bragg peak characterization method using proton flux measurements on plastic scintillators D R Guerreiro, J G Saraiva, L Peralta, C Rodrigues, M Rovituso, E van der Wal, Dennis R Schaart, P Crespo, H Simões and J M Sampaio Phys. Med. Biol. 69 (2024) 225005 https://doi.org/10.1088/1361-6560/ad8da0

  98. Developing competencies through flow, gamification and cultural integration: an analysis of the potential of games in teaching/learning L. Lopes, S. Schreurs, C. Licour, S. Soares Radiat. Eff. Defects Solids 179 (2024) 3-13 2024-01-02 10.1080/10420150.2024.2318700

  99. Thickness and Uniformity of Commercial Aluminum Foils L. Peralta, A. I. Campos and M. S. Rodrigues Journal of Materials Engineering and Performance 2024-12-22 https://doi.org/10.1007/s11665-025-10722-8

  100. New readout scheme for large area timing & position RPCs Joao Saraiva, Alberto Blanco Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1068 (2024) 169803 2024-11-01 10.1016/j.nima.2024.169803

  101. SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Collaboration (202 authors) JINST 19 (2024) P05067 2024-05-23 10.1088/1748-0221/19/05/P05067

  102. Results and Perspectives from the First Two Years of Neutrino Physics at the LHC by the SND@LHC Experiment SND@LHC Collaboration Symmetry 16 (2024) 6, 702 2024-06-06

  103. Observation of collider neutrinos without final state muons with the SND@LHC experiment SND@LHC Collaboration CERN-EP-2024-316 2024-11-25

  104. Differentiable Vertex Fitting for Jet Flavour Tagging Rachel E. C. Smith, Inês Ochoa, Rúben Inácio, Jonathan Shoemaker, Michael Kagan PHYSICAL REVIEW D 110, 052010 (2024) 10.1103/PhysRevD.110.052010

  105. Spatial Analysis of Determinants of COVID-19 Vaccine Hesitancy in Portugal Constança Pinto de Carvalho, Manuel Ribeiro, Diogo Godinho Simões, Patrícia Pita Ferreira, Leonardo Azevedo, Joana Gonçalves-Sá, Sara Mesquita, Licínio Gonçalves, Pedro Pinto Leite, André Peralta-Santos Vaccines 2024, 12(2), 119 10.3390/vaccines12020119

  106. Correction to: Fundamental parameters for 45 open clusters with Gaia DR2, an improved extinction correction and a metallicity gradient prior H Monteiro, W S Dias, A Moitinho, T Cantat-Gaudin, J R D Lépine, G Carraro, E Paunzen Monthly Notices of the Royal Astronomical Society, Volume 528, Issue 4, March 2024, Page 6129 https://doi.org/10.1093/mnras/stae363

  107. Gaia Focused Product Release: A catalogue of sources around quasars to search for strongly lensed quasars Andre Moitinho et al. 2023-10-09 https://doi.org/10.1051/0004-6361/202347273

  108. Discovery of a dormant 33 solar-mass black hole in pre-release Gaia astrometry Andre Moitinho et al. A&A, 686, L2 (2024) 2024-03-30 https://doi.org/10.1051/0004-6361/202449763

  109. Programmable Optical Synaptic Linking of Neuromorphic Photonic-Electronic RTD Spiking Circuits Matěj Hejda, Weikang Zhang, Qusay Raghib Ali Al-Taai, Ekaterina Malysheva, Dafydd Owen-Newns, José M. L. Figueiredo, Bruno Romeira, Joshua Robertson, Victor Dolores-Calzadilla, Edward Wasige, Antonio Hurtado ACS Photonics 2024, 11, 4279−4287 2024-09-18 https://doi.org/10.1021/acsphotonics.4c01199

  110. ELEPHANT: ExtragaLactic alErt Pipeline for Hostless AstroNomical Transients A. Moitinho et al. 2024-09-09 https://doi.org/10.1051/0004-6361/202450535

  111. Photonic-electronic spiking neuron with multi-modal and multiwavelength excitatory and inhibitory operation for high-speed neuromorphic sensing and computing Weikang Zhang, Matěj Hejda, Qusay Raghib Ali Al-Taai, Dafydd Owen-Newns , Bruno Romeira , José M. L. Figueiredo , Joshua Robertson, Edward Wasige, Antonio Hurtado Neuromorph. Comput. Eng. 4 044006 2024-11-01 DOI 10.1088/2634-4386/ad8df8

  112. Spiking flip-flop memory in Resonant Tunnelling Diode neurons Giovanni Donati, Dafydd Owen-Newns, Joshua Robertson, Ekaterina Malysheva, Andrew Adair, José Figueiredo, Bruno Romeira, Victor Dolores-Calzadilla, Antonio Hurtado PHYSICAL REVIEW LETTERS 133, 267301 (2024) 2024-11-18 10.1103/PhysRevLett.133.267301

  113. A Large Jet Narrow-line Seyfert 1 Galaxy: Observations from Parsec to 100 kpc Scales Sina Chen, Preeti Kharb, Silpa Sasikumar, Sumana Nandi, Marco Berton, Emilia Järvelä, Ari Laor, Ehud Behar, Luigi Foschini, Amelia Vietri, Minfeng Gu, Giovanni La Mura, Luca Crepaldi, and Minhua Zhou Astrophysical Journal, Volume 963, Number 1 10.3847/1538-4357/ad182a

  114. Potential of water-Cherenkov air shower arrays for detecting transient sources of high-energy astrophysical neutrinos J. Alvarez-Muñiz, R. Conceição, P. J. Costa, B. S. González, M. Pimenta, and B. Tomé Phys. Rev. D 110, 023032 2024-06-13 10.1103/PhysRevD.110.023032

  115. High resolution gamma/hadron and composition discriminant variable for water-Cherenkov detector cosmic-ray observatories Ruben Conceição, Pedro J. Costa, Lucio Gibilisco, Mário Pimenta and Bernardo Tomé Phys. Rev. D 110, 023033 2024-06-24 https://doi.org/10.1103/PhysRevD.110.023033

  116. Oliveira, F.S.B.F., A.B. Fortunato, P. Freire (2024). Beach Nourishment Protection against Storms for Contrasting Backshore Typologies, Journal of Marine Science and Engineering, 12/9: 1465.

  117. Muralha, A.; Melo, J.F.; Ramos, H.M. Validation of Computational Methods for Free-Water Jet Diffusion and Pressure Dynamics in a Plunge Pool. Appl. Sci. 2025, 15, 1963. https://doi.org/10.3390/app15041963

  118. Muralha, A.; Melo, J.F.; Ramos, H.M. Numerical simulation of a plunging jet. Performance comparison between volume-of fluid and two-phase Euler solvers, Proceedings of the 8th IAHR Europe Congress "Water across boundaries", Lisboa, Portugal, 4 - 7 junho.

  119. Garzon, J.L.; Ferreira, Ó.; Plomaritis, T.A.; A.C. Zózimo, A.C.; Fortes, C.J.E.M.; Pinheiro, L.V. (2024). "Development of a Bayesian network-based early warning system for storm-driven coastal erosion", in Coastal Engineering, Vol. 189 (2024), 104460, ISSN 0378-3839, https://doi.org/10.1016/j.coastaleng.2024.104460

  120. Pinheiro, L.V.; Zózimo, A.C.; Fortes, C.J.E.M. (2024). "New developments in the Praia da Vitória Coastal Bay and Harbor Early Warning System", in Coastal and Offshore Science and Engineering, Year II - Vol.4 - 2023, pp. 6-18, DOI: 10.53256/COSE_230201.

Oral Presentations

  1. LFcin Refinery: A machine learning approach to improve antimicrobial peptides’ efficacy against nontuberculous mycobacteria Gabriel S. Oliveira, Maria Salomé Gomes, Sérgio F. Sousa, Tânia Silva - IMAP 2024 11th International Meeting on Antimicrobial Peptides 2024/09/02-04 (London, United Kingdom) 1- Tackling biofilm formation using an in silico approach Tatiana F. Vieira - LAQV Webinar 2024/04/17 (Porto, Portugal) (online)
  2. Exploring pH-dependent Dynamics Of Doxorubicin Delivery Using Functionalized Multi-walled Carbon Nanotubes: Insights From Molecular Dynamics Simulations Fábio G. Martins, Sérgio F. Sousa – Biophysics Festival - 4th Meeting of Young Biophysics 9-10.05.2024 (Covilhã, Portugal)
  3. Development of a Computational Protocol for the Rational Design of Nanomedicines Aimed at Cardiovascular Diseases Fábio G. Martins, Sérgio F. Sousa – XXII National Congress of Biochemistry 24-26.10.2024 (Aveiro, Portugal)
  4. Use of HPC Computing for Accelerating Drug Discovery Targeting the SARS-CoV-2 S-RDB/ACE2 Interaction Fábio G. Martins, Sérgio F. Sousa IBERGRID 2024 – 28-30.10.2024 (Porto, Portugal)
  5. A Computational Strategy for the Design of Targeted Nanomedicines in Cardiovascular Diseases Fábio G. Martins, Sérgio F. Sousa – XXVIII Encontro Galego-Português de Química 13-15.11.2024 (Vigo, Spain)
  6. Molecular Insights into HIV-1 Integration: A Computational Study of Intasome-Nucleosome Interactions Fábio G. Martins, Sérgio F. Sousa – LAQV WEBINAR 21.05.2025 (Online)
  7. Development and Application of a Multi-Level Computational and In Vitro Approach for Identifying MAPK3 Inhibitors in Leishmania martiniquensis and Leishmania orientalis – Duangnapa Kiriwan, Tatiana F. Vieira, Nutnaree Kumsiri, Kiattawee Choowongkomon, Sergio F. Sousa - BIOPHYSICS FESTIVAL – 4 th Meeting of Young Biophysicists - 9-10.05.2024
  8. Tripeptide-Based Inhibition of EGFR Tyrosine Kinase in Lung Cancer: Findings from Computational and Experimental Studies - Duangnapa Kiriwan, Supaphorn Seetaha, Nattanan Jiwacharoenchai, Lueacha Tabtimmai, Napat Songtawee, Kiattawee Choowongkomon, Sérgio F. Sousa - XXII SPB National Congress of Biochemistry - 24- 26.10.2024
  9. From plants to anti-snakebite mechanisms. Airam Roggero, Isabelly Annunciato, Fabio G. Martins, Igor Nicodemo, Marcos H.Toyama, Sergio F. Sousa. 6th Meeting on Medicinal Biotechnology 2024
  10. Effects of Morin on Cell Membrane Fluidity: An Analysis of the Anti-inflammatory Efficacy of Flavonoids. Airam Roggero, Caroline Ramos da Cruz, Marcos H. Toyama, Sergio F. Sousa. - XXIX National Meeting of the Portuguese Chemical Society, Coimbra, Portugal, 2025.
  11. Enzyme Modulation and Inflammation: A New Therapeutic Target. Airam Roggero, Marcos H. Toyama, Sergio F. Sousa - 7th Symposium on Medicinal Chemistry of University of Minho, Braga, Portugal, 2025.
  12. Aspartame and Inflammation: An In Silico Evaluation of Interference in the Land’s Cycle and Cell Membrane Integrity. Isabelly Annunciato; Michelle Rafael; Igor Nicodemo; Airam Roggero; Caroline R. da Cruz; Mariana N. Belchor; Adeilso B. S. Junior; Gustavo A. Fernandes; Marcos A. de Oliveira; Sérgio F. Sousa; Marcos Hikari Toyama – XXVII Encontro Luso Galego de Química 22/11/2023 to 24/11/ 2023 (Porto, Portugal)
  13. Use of HPC Resources to Find New Drugs Against Biofilm Formation Tatiana F. Vieira, Sérgio F. Sousa - IBERGRID 2024 2024/10/28-30 (Porto, Portugal)
  14. Engineering aptamers for Biomedical Application using Biomolecular Simulations Sérgio F. Sousa - 26th Congress of the International Union of Biochemistry and Molecular Biology (IUBMB) 2024/09/25 (Melbourne, Australia)
  15. Development of Computational Methods For Aptamer Engineering For Targeted-Drug Delivery Sérgio F. Sousa - XXVIII EFMC International Symposium on Medicinal Chemistry 2024/09/03 (Rome, Italy) (Flash talk/poster)
  16. Application of QM/MM Methods in Enzyme Bioengineering Efforts: Understanding PET Degrading Activity of PETases Sérgio F. Sousa - XLVII International Congress of Theoretical Chemists of Latin Expression (Chitel2024) 2024/07/03 (Namur, Belgium)
  17. Application of QM/MM Methods in the Study of the Enzyme Efficiency by PET Degrading Enzymes Sérgio F. Sousa - ESPA2024 Meeting (Electronic Structure Principles and Applications Conference) 2024/06/06 (Tarragona, Spain)
  18. Probing the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET Degrading Enzymes by QM/MM Methods Sérgio F. Sousa - International Society of Quantum Biology and Pharmacology (ISQBP) 2024 President’s Meeting 2024/05/21 (Athens, Greece)
  19. Towards One Health: Combining Biomolecular Simulations, Artificial Intelligence and Scientific Databases Sérgio F. Sousa - 1-day Course for the PhD Program in Integrated Health (One Health) at FMUP (Invited Lecture) 2024/11/15 – (Porto, Portugal)
  20. Development of Multi-Level Biomolecular Simulation Protocols for Aptamer Engineering for Biomedical Applications Sérgio F. Sousa - 13th Iberian Grid Conference – IBERGRID 2024 (Plenary Lecture) 2024/10/30 – (Porto, Portugal)
  21. Application of QM/MM Methods in Enzyme Bioengineering Efforts: Understanding PET Degrading Activity of PETases Sérgio F. Sousa - International Symposium on Future in Enzyme Modeling (FEM2024) (Invited lecture) 2024/10/25 – (Tianjin, China)
  22. Combining Biomolecular Simulations with Medicinal Chemistry: Expanding Horizons Sérgio F. Sousa - Global Health Horizons: Empowering Pharmacists Through Research and Development Conference - World Pharmacists Day 2024 - Indira Gandhi National Tribal University (Plenary Lecture) 2024/09/24 – (Amarkantak, Madhya Pradesh, India) (online)
  23. Combining Different In Silico Methods for Drug Design and Development: Challenges and Opportunities Sérgio F. Sousa - Virus-Host-AI Meeting (Invited Lecture) 2024/07/29 – (Figueira da Foz, Portugal)
  24. Multiscale Modelling of DNA/RNA Aptamers for Molecular Recognition Sérgio F. Sousa - XLVIII International Congress of Theoretical Chemists of Latin Expression (Chitel2025) 2025/07/17 (Cartagena-das-Indias, Colombia)
  25. Exploring the interaction between nitrosamines with PAF-AH enzyme: in silico prospection for new therapeutic strategies Isabelly Annunciato - International Conference on Integrative Bioinformatics and Computer Systems Biology (ICIBCSB - 23) - 05/10/2023 - (Milan, Italy)
  26. Understanding the mechanism of action of multi-target anti-diabetic natural compounds using Virtual Screening Carlos S. H. Shiraishi; Fábio G. Martins, Sérgio F. Sousa, Miguel A. Prieto, Sandrina A. Heleno and Rui M. V. Abreu. Academy Branch of the Conference,4th Insure Hub Conference “Innovation, Sustainability and Regeneration, October 29-30, 2024, in Porto.
  27. Madeira C (presenter), Lohmann D, Kirner A, Gaspar J, Bornhäuser J, Martins C, D’Ambrosio M, António C, Maricato R, Araújo E, Rodrigues AM, Costa PM, Diniz MS (2025). Climate change in the Eastern Tropical Pacific: Adaptive responses of the commercial fish spotted rose snapper – Implications for Conservation. Global Coral Reef Monitoring Network Meeting – Eastern Tropical Pacific Node, 15-04-2025, online.
  28. Madeira C (presenter), Missionário M, Cabral IM, Fernandes JF, António C, Rodrigues AM, D’Ambrosio M, Menconça V, Grosso AR, Costa PM, Madeira D (2024). Iberian goby populations from colder sites display low phenotypic variation despite high molecular plasticity in response to heat. SEB Society for Experimental Biology Congress, 2nd-5th July, Prague, Czech Republic.
  29. Madeira C, Costa PM (2024) Marine molecular networks for a healthy ocean and a sustainable blue economy. Scientific Conference Series, Institute Maurice Lamontagne – Department of Fisheries and Oceans Canada, 16-05-2024, Mont-Joli, Québec, Canada. Invited by Dr. Kathleen McGregor.
  30. Madeira C, António C, Rodrigues AM, Lohmann D, Martins C, Kirner A, Bornhäuser J, Gaspar J, D’Ambrosio M, Estcourt T, Schwerdt S, von Hammerstein H, Vince J, Calvo-Elizondo E, Esquivel E, Chacon-Guzman J, Diaz-Pulido G, Doo S, Clarke T, di Falco C, Bejarano S, Costa PM, Diniz MS (2024) Tropical fish on the move: climate change impacts in species physiology and potential biodiversity redistributions. University of Québec at Rimouski, 08-05-2024, Rimouski, Québec, Canada. Invited by Prof. Piero Calosi.
  31. Madeira C, Costa PM, Madeira D, Vinagre C (2024) From molecules to ecosystems: thermal biology of marine fish, Reef Systems WG Workshop EU-Colombia, Leibniz Centre for Tropical Marine Research, 25-01-2024, Bremen, Germany. Invited by Dr. Sonia Bejarano.
  32. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Multilayer networks in benthic fish responses to environmental stressors in intertidal environments, AG Voolstra Lab Networking Seminar, Department of Biology, Universität Konstanz, 18-01-2024, Konstanz, Germany. Invited by Prof. Christian Voolstra.
  33. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Molecular networks in small benthic fish adaptation to labile environments, Institute of Evolution and Ecology Seminars, Faculty of Science, University of Tübingen, 17-01-2024, Tübingen, Germany. Invited by Prof. Nico Michiels.
  34. Madeira C, Costa PM, Madeira D, Vinagre C (2024) Stress response mechanisms of small benthic fish in fluctuating environments, Institute of Marine Ecosystem and Fishery Science Seminars, Universität Hamburg, Faculty of Mathematics, Informatics and Natural Science, 15-01-2024, Hamburg, Germany. Invited by Prof. Flemming Dahlke.
  35. Missionário M (presenter), Madeira D, Vinagre C, Costa PM, Madeira C (2022). Marine shallow waters as climate change hotspots – multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. BioSeminars@UCIBIO. UCIBIO-NOVA & UCIBIO-Porto, 21-12-2022, Online.
  36. Cabral IM (presenter), Costa PM, Grosso AR, Madeira C (2023) A transcriptomic approach to unravel molecular mechanisms contributing to heat acclimatization of a non-conventional model marine organism. InSilicoClub@UCIBIO, UCIBIO-NOVA & UCIBIO-Porto, 26-03-2023, Online.
  37. E. Faustino, S.L. Mendes, J. Carvalho, C. Sousa-Santos; V.C. Sousa. Hybridization between currently allopatric species at the root of speciation? The case of Iberian chubs (Genus Squalius) XX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology in BIOPOLIS – CIBIO, Research Centre in Biodiversity and Genetic Resources, Vila do Conde, Portugal. 19-20 December 2024.
  38. A. Blanckaert, V.C. Sousa. Interactions between mechanisms of reproductive isolation, 3rd Joint Congress of Evolutionary Biology, Montreal, Canada. 30th July 2024.
  39. S.L. Mendes, E. Faustino, C. Bernardo, S. Perea, I. Doadrio, C. Sousa-Santos, P.G. Feulner, V.C. Sousa. “Hybridization is prevalent but outcomes are distinct across Iberian chubs”. 3rd Joint Congress on Evolutionary Biology. Montreal, Canada. 30th July 2024
  40. "The octocoral microbiome: exploring pathogens, probiotics and climate change impacts" at Biological Sciences Research Group, Instituto Superior Técnico, University of Lisbon, Portugal
  41. Institute Seminar entitled "Designing probiotics to promote octocoral health under climate change" at Department of Bioengineering, Instituto Superior Técnico, University of Lisbon, Portugal
  42. Martins,R; Fortunato, A B; Oliveira, A, Jesus, G; Mani, S; Meyers, E; Moghimi, S (2024). OPENMeshS: an online, open, unstructured mesh generator for OPENCoastS, 8th IAHR Congress Full papers, 177-182. DOI: 10.34638/3zcb-9082
  43. Fortunato, A B; Freire, P; Ana, R; Viseu, T; Rodrigues, M (2024). Mapping inundation of estuarine margins driven by ocean and fluvial forcings, 8th IAHR Congress Full papers, 229-235. DOI: 10.34638/3zcb-9082
  44. Rodrigues, M; Fortunato, A B; Martins, R J; Jesus, G; Brito, A C; Oliveira, A; Nahon, A; Costa, J L.; Alves, E; Korani, Z M; Azevedo, A (2024). CONNECT – Local coastal monitoring service for Portugal, 8th IAHR Congress Full papers, 237-246. DOI: 10.34638/3zcb-9082
  45. SASSETTI MENDES, L.; MURALHA, A.; MELO, J.F.; VISEU, T. (2024). Why Computational Fluid Dynamics is Mandatory in Physical Modelling Of Large Hydraulic Structures: A Six-Step Methodology Of Integration. 8th IAHR Europe Congress. LNEC, Lisboa, 4 a 7 de Junho de 2024.
  46. SASSETTI MENDES, L., ALVES, E. (2024). Volume-Of-Fluid vs Euler-Euler - CFD Of Pisão Dam’s Stilling Basin. 6th Foam@Iberia. Ferrol, Espanha. 3 a 4 de outubro de 2024.

Proceeding in international conferences

  1. Arias, D., Gadelho, J. and Guedes Soares, C., 2024. Numerical simulations evaluating the influence of different geometric features in the pneumatic efficiency of OWC devices. In Innovations in Renewable Energies Offshore (pp. 249-256). CRC Press. DOI: 10.1201/9781003558859-28
  2. Li, H.S., Wang, S. and Guedes Soares, C., 2024. Uncertainty assessment of the scale effects on a submerged cylinder. In Advances in Maritime Technology and Engineering (pp. 139-148). CRC Press. DOI: 10.1201/9781003508779-15
  3. Fortes, C.J.E.M.; Pinheiro, L.V.; Zózimo, A.C.; Lima, L.; Serrazina, V. (2024). "HIDRALERTA: Emergency Response Module for Coastal Wave Overtopping and Flooding at Praia da Vitória bay", in proceedings of the 8th IAHR Congress, LNEC, Lisbon, 4-7 June, 2p.
  4. Garzon, J.L.; Ferreira, Ó.; Zózimo, A.C.; Fortes, C.J.E.M.; Pinheiro, L.V., (2024). "Development of an efficient early warning system for wave-induced flooding", 38th ICCE, Rome, 8-14 September, 2p, comunicação feita, a aguardar publicação das atas (versão digital obtida através da Conftool do congresso).
  5. Zózimo, A.C.; Pinheiro, L.V.; Chenneveau, L.; Manz, A.; Garzon, J.L.; Fortes, C. (2024). "Deep learning framework to use complex models in operational forecast systems", 38th ICCE, Rome, 8-14 September, 2p, comunicação feita, a aguardar publicação das atas (versão digital obtida através da Conftool do congresso).

Posters (internation meetings)

  1. Galamba, N. Cyclic Peptides as Protein Aggregation Inhibitors for Globular and Intrinsically Disordered Disease-Related Proteins, The Leuven Protein Aggregation Meeting (2nd edition), September 11-13, 2024, Leuven, Belgium – poster
  2. Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Gonçalves Carvalho Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "Molecular Modeling in Biotechnology: Design and Discovery of small molecule adsorbents". Trabalho apresentado em EuroQSAR 2024, 2024.
  3. Jéssica Rodrigues; Carlos Costa; Carolina Mota Natal; Ana Margarida Dias; Roque, ACA; Moura Barbosa, Arménio J.. Autor correspondente: Moura Barbosa, Arménio J.. "In silico Affinity Ligands: Design and Discovery of small molecule adsorbents". Trabalho apresentado em Bpi Europe 2024, 2024.
  4. Moura Barbosa, Arménio J.; Soares, Cátia Lopes; Esteves, Carina; Nurrito, Ariana; Lychko, Iana; Ana Margarida Dias; Pina, Ana Sofia; Roque, Ana Cecília Afonso. "From code to structure: molecular modeling in biomaterials assembly". Trabalho apresentado em SUPRAlife Second School – “Bioinspired Supramolecular Self-Assemblies, 2024.
  5. Using QSAR models to refine antimicrobial peptides against Mycobacterium abscessus Gabriel S. Oliveira, Maria Salomé Gomes, Sérgio F. Sousa, Tânia Silva - ESCMID Global 2025 2025/04/11-15 (Wien, Austria)
  6. Metodologia in silico para identificação de novos compostos para inibição da formação de biofilme em P. aeruginosa Tatiana F. Vieira, Manuel Simões, Nuno M. F. S. A. Cerqueira, Sérgio F. Sousa – Ciência 2024: Encontro com a Ciência e Tecnologia em Portugal, Porto 2024/07/3-5 (Porto, Portugal)
  7. Molecular Dynamics Simulations of Lysinated Multiwalled Carbon Nanotubes for Enhanced Delivery of Doxorubicin in Cancer Therapy Fábio G. Martins; Sérgio F. Sousa – 6th Meeting on Medicinal Biotechnology 17.05.2024 (Porto, Portugal)
  8. Optimizing Doxorubicin Delivery in Cancer Treatment with Lysinated Multiwalled Carbon Nanotubes: A Molecular Dynamics Study Fábio G. Martins, Sérgio F. Sousa – Encontro Ciência 2024 03.07.2024 (Porto, Portugal)
  9. Modeling HIV-1 Intasome-Nucleosome Interactions: A Molecular Perspective Fábio G. Martins, Sérgio F. Sousa – 7th Meeting on Medicinal Biotechnology 30.05.2025 (Porto, Portugal)
  10. Multi-level Computational and In Vitro Approach for Identifying MAPK3 Inhibitors in Leishmania martiniquensis and Leishmania orientalis (E-poster) - Duangnapa Kiriwan, Tatiana F. Vieira, Nutnaree Kumsiri, Kiattawee Choowongkomon, Sergio F. Sousa – Portuguese Science Summit 2024 – 03-05.07.2024
  11. Computational Identification of Dual Protein Targets for Anti-leishmanial Drug Development - Duangnapa Kiriwan, Sergio F. Sousa – 7th Meeting on Medicinal Biotechnology - 30.05.2025 (Porto, Portugal)
  12. Creation of a 3D-Molecular Database of Voltage-Gate Sodium Channels - João Boazinha, João Carneiro, Nuno M.F.S.A Cerqueira, Sérgio F. Sousa - 6th Meeting on Medicinal Biotechnology 2024/05/17 (Porto, Portugal)
  13. Development of a 3D-Molecular Database of Voltage-Gate Sodium Channels (E-Poster) - João Boazinha, João Carneiro, Nuno M.F.S.A Cerqueira, Sérgio F. Sousa - Encontro Ciência 2024 2024/07/03 to 2024/07/05 (Porto, Portugal)
  14. Influence of Nonsteroidal Anti-inflammatory Drugs on Membrane Repair. Airam Roggero, Igor Nicodemo, Fabio G. Martins, Marcos H. Toyama, Sergio F. Sousa.. Encontro Ciência 2024. Porto, Portugal 2024.
  15. Impact of NSAIDs on the Enzymatic Alteration of the Lands Cycle and Their Long-Term Hepatic Effects - Aiam Roggero, Fabio G. Martins, Marcos H. Toyama, Sergio F. Sousa..3ª edição do Congresso de Ciências. Faculdade de Ciências da Universidade do Porto, Porto, Portugal 2024.
  16. From Sustainability Until Green Engineering A Puzzle to Classes - Airam Roggero; Pedro H. S. Fernandes; Marcos H.Toyama; Sergio F. Sousa.. XXII National Congress of Biochemistry. University of Aveiro, Aveiro, Portugal 2024.
  17. Exploring The Sites of Interaction Of Non-Steroidal Antiinflammatory Drugs With Enzymes In The Landis Cycle. Biophysics Festival - Airam Roggero, Isabelly Annunciato, Igor Nicodemo, Fabio G. Martins, Marcos Hikari Toyama, Sergio F. Sousa. – 4th Meeting of Young Biophysicists. Faculty of Sciences of University of Beira Interior, Covilhã, Portugal
  18. NSAIDs from antiinflammatory to PAF AH potential inhibitor, far beyond inhibition of COX to potential anti- tumor agent - Roggero , I. Annunciato, I. Nicodemo, C.R. Costa, G.A. Fernandes, A.B. Junior, M. Rafae, M.A. de Oliveira, S.F. Sousa, M.H. Toyama..48th FEBS Congress, Milan, Italy, 2024.
  19. Gallic Acid as a Supportive Agent in the Immunotherapy of Cancer. Airam Roggero, Caroline Ramos da Cruz, Igor Nicodemo, Pedro Loyola, Marcos H. Toyama, Sergio F. Sousa. - 7th Meeting on Medicinal Biotechnology & 3rd Iberian Congress on Medicinal Biotechnology. Escola Superior de Saúde, Porto, Portugal, 2025.
  20. Lands cycle is a new therapeutic target for antitumor drugs. Airam Roggero, Igor Nicodemo, Pedro Loyola, Carol R. Cruz, Marcos H. Toyama, Sergio F. Sousa - Encontro Ciência 2025. Lisboa, Portugal, 2025.
  21. Activating Factor Regulation: A Computational Prospection for Therapeutic Insights - . Annunciato, I. ; Toyama, Marcos Hikari ; Santos Junior, A. B. ; Roggero, A. ; Cruz. C, R, C. ; Sousa, S. F. ; Oliveira, M. A. ; Rafael, M. ; Nicodemo, I. ; Fernandes, Gustavo Antônio . Exploring Nitrosamines' Impact on Patelet. - Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024, Águas de Lindóia. 53rd Annual Meeting of the Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024.
  22. NSAIDs from anti-inflammatory to PAF AH potential inhibitor, far beyond inhibition of COX to potential anti- tumor agent. Roggero, A., Annunciato, I., Nicodemo, I., Costa, C.R.C., Junior, A.B.S., Rafael, M., Oliveira, M.A., Souza, S.F., Toyama M.H.1, Toyama, M.Η.. Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024, Águas de Lindóia. 53rd Annual Meeting of the Brazilian Society of Biochemistry and Molecular Biology (SBBq), 2024.
  23. Development of Combined Multi-scaled In Silico Tools For Aptamer Design Sérgio F. Sousa - 15th European Biophysics Congress (EBSA2025) 2025/07/03 (Rome, Italy)
  24. Computational Chemistry Driven Development of DNA/RNA Aptamers Sérgio F. Sousa - 49th FEBS Congress (FEBS2025) 2025/07/06 (Istanbul, Turkey)
  25. Innovative method to identify plants with antidiabetic ingredients using high performance computing Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. International Conference on Sutainable Foods - Achieving the Sustainable Development Goals (ICSF), School of Technology and Management (ESTiG) of the Polytechnic Institute of Bragança on July 24th and 25th of 2024.
  26. Triagem Virtual de Potenciais Inibidores Naturais Antidiabético do Cotransportador de Glicose de Sódio Tipo 2 (SGLT2) Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. IPO Porto Summit held on May 9-11, 2024 at the Portuguese Oncology Institute of Porto.
  27. Identification of dual-target antidiabetic mushrooms natural compounds using virtual screening Carlos S. H. Shiraishi; Fábio A. Martins ; Sérgio F. Sousa ; Miguel Prieto Sandrina Heleno and Rui Abreu. 2nd Conference of the Doctoral Program in Metabolism – Clinical and Experimental, within the topic of “METAINFLAMMATION: A HOT TOPIC IN METABOLIC DYSFUNCTION”, held at the Faculty of Medicine of the University of Porto, Portugal on the 25th of October 2024.
  28. An In silico prospection for new therapeutic strategies: the impact of nitrosamines in PAF regulation Isabelly Annunciato; Igor Nicodemo; Michelle Rafael; Airam Roggero; Caroline C. Ramos; Mariana N. Belchor; Adeilso B. S. Júnior; Gustavo A. Fernandes; Marcos A. Oliveira; Sérgio F. Sousa; Marcos H. Toyama – 3D-Bioinfo-PT Annual Meeting – Faculdade de Ciências e Tecnologia da Universidade de Coimbra – 18.12.2023
  29. C5 Genetic Variants Affect the Stability of the C5-Eculizumab Complex Vanda P. Peixoto, Cristina Prudêncio, Mónica Vieira, Sérgio F. Sousa – 7th Meeting on Medicinal Biotechnology & 3rd Iberian Congress on Medicinal Biotechnology 30.05.2025 (Porto, Portugal)
  30. KDM4C epigenetic therapy for triple-negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - Encontro Ciência 2024 - Science and Technology Summit 2024/07/3-5 (Porto, Portugal)
  31. Design of new epigenetic inhibitors for the treatment of triple negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - 6th Meeting of Medicinal Biotechnology 2024/05/17 (Porto, Portugal)
  32. Therapeutic epigenetic KDM4C remodeling for the treatment of triple negative breast cancer Sofia M. Sousa; Fernanda Proença; Marta Costa; Sérgio F. Sousa - 30th Porto Cancer Meeting 2024/05/9-10 (Porto, Portugal)
  33. Ferri, A., Moutinho Cabral, I., Sabia, C., Iseppi, R., Costa, P.M., Simonini, R. (2024) "Unveiling the biotechnological potential of marine polychaete Halla parthenopeia: Insights into hallachrome antimicrobial properties and toxin identification". 57th European Marine Biology Symposium.
  34. Madeira, C., António, C., Rodrigues, A.M., Lohmann, D., Martins, C.A., Kirner, A., Bornhäuser J., et al. (2024) "Marine molecular networks underpinning stress tolerance to warming and acidification in the spotted rose snapper Lutjanus guttatus from the Eastern Tropical Pacific". Society for Experimental Biology Congress.
  35. Madeira C, António C, Rodrigues AM, Lohmann D, Martins C, Kirner A, Bornhäuser J, Estcourt T, Schwerdt S, von Hammerstein H, Vince J, Calvo E, Esquivel E, Chacon-Guzman J, Diaz-Pulido G, Doo S, Diniz MS, Costa PM, Bejarano S (2024) Marine molecular networks underpinning stress tolerance to warming and acidification in the spotted rose snapper Lutjanus guttatus from the Eastern Tropical Pacific. Society for Experimental Biology (SEB) Congress, 2nd-5th July, Prague, Czech Republic.

Posters (national meetings)

Thesis / Dissertation

PhD Thesis

Finished

Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex Student: André Pina (Supervisor Principal: Nuno Cerqueira; Co-Supervisor: Sérgio Sousa) Doutoramento: Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal Janeiro de 2024

  1. Development of biocidal formulations for effective biofouling control Student: Susana Maria da Fonseca Fernandes (Supervisor Principal: Manuel Simões; Outros Supervisores: Sérgio Sousa e Fernanda Borges ) Doutoramento: Programa Doutoral em Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal Fevereiro de 2024
  2. Paroxysmal Nocturnal Hemoglobinuria: Unraveling Epidemiological Patterns, Molecular Mechanisms, And Biotechnological Advances Student: Vanda Patrícia Pinto Peixoto (Supervisor Principal: Mónica Vieira, ESS; Co-supervisor: Sérgio F. Sousa) Doutoramento: PhD Program in Advanced Biotechnology (PhD) Universidade de Vigo, Spain Junho 2024
  3. New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach Student: Cláudia Tatiana Vieira (Supervisor Principal: Sérgio F. Sousa; Outros Supervisores: Manuel Simões e Sérgio F. Sousa ) Doutoramento: Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal Julho de 2024

Ongoing

  1. Sofia Mendes, Biology PhD programme, Host: CE3C-Ciências (12.2019-07.2025) Co-supervisors: Dr. Carla Sousa-Santos (ISPA), Dr. Philine Feulner (EAWAG). Thesis: The role of hybridization in speciation and adaptation: insights from Iberian freshwater fish species. Funding: FCT scholarship SFRH/BD/145153/2019 to SM.
  2. João Carvalho, BIODIV PhD programme, Host: CE3C-Ciências (03.2018-02.2024) Co-supervisors: Prof. Roger Butlin (Sheffield U.), Dr. Rui Faria (CIBIO, U. Porto). Thesis: Genomics of ecotype formation: interplay between demographic processes and natural selection. Funding: FCT scholarship PD/BD/128350/2017 to JC.
  3. Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OPENFOAM, Jorge Filipe Marques Gadelho, Instituto Superior Técnico, 14/03/2025
  4. Matilde MArques, "Insights into the octocoral microbiome in health and disease: from climate change impacts to probiotic prospects" at Instituto Superior Técnico, University of Lisbon, Portugal
  5. Study by simulation and reconstruction of a brain-dedicated positron emission tomograph based on resistive plate chambers Ana Luísa Lopes UC
  6. Quarkonium production studies at LHC energies: towards the understanding of bound-state formation by the strong force Mariana Araújo IST
  7. Tomografia de Muões com RPCs na Mina do Lousal Pedro Teixeira UÉvora
  8. Study of the Spin/CP properties of the Higgs coupling to W-bosons with ATLAS at the LHC Ricardo Barrué IST
  9. Using online behaviour to track global outbreaks and pandemics Sara Mesquita UNL-NOVA
  10. Searching for dark matter with the ATLAS detector using unconventional signatures Maura Teixeira UMinho
  11. Modeling the radiobiological effects of gold nanoparticles in proton therapy of glioblastomas Joana Antunes FCUL
  12. Evaluating the Effectiveness of Mini-Beam Radiation in Cancer Therapy Miguel Molina-Hernández IST
  13. Bragg Peak monitoring through prompt-gamma: detection and instrumentation José Patuleia Venâncio IST
  14. Search for new physics in exclusive processes at the Large Hadron Collider Matteo Pisano IST
  15. A next-generation gamma-ray observatory powered by Machine Learning techniques Borja González IST
  16. Pentaquark spectroscopy for the LHC Raúl Torres IST
  17. Phase-II Tracking in ATLAS and search for ttHH production using Run-2 and Run-3 LHC Data Luis Coelho UC
  18. The substructure of in-medium jets João Martins da Silva IST
  19. Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira IST
  20. Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado IST
  21. Raios Cósmicos: desenvolvimento de módulos de divulgação através de design participativo Luís Afonso UP
  22. Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes IST
  23. Study of lepton universality in top quarks pairs events Giacomo Da Molin IST
  24. Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares IST
  25. Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves IST
  26. Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud UC
  27. Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe FCUL
  28. The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho FCUL
  29. Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues FCUL
  30. Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco IST
  31. Developing Multi-Beam FLASH with Proton Beams Joana Leitão IST
  32. Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás IST
  33. Transporte de carga por iões negativos em gases nobres com dopantes eletronegativos Afonso Paixão Marques UC
  34. Timing Detectors and Measurements of Higgs Boson Properties Johan Wulff IST
  35. AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza UMinho
  36. Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa IST
  37. The Partonic Structure of Hadrons Eduardo Ferreira UniGraz
  38. Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes UMinho
  39. Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro IST
  40. Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli FCUL
  41. Search for New Physics in gauge boson scattering with the CMS experiment at the Large Hadron Collider Giovanni Marozzo IST
  42. Studying the origin of the elements with radioactive ions at ISOLDE/CERN Francisco Barba FCUL
  43. Study of hadronic interactions through the muon component of inclined extensive air showers with the Pierre Auger Miguel Martins IGFAE/USC
  44. Jetography in Heavy Ion Collisions André Cordeiro IST
  45. Atomic inputs for probing the r-process in kilonovae Ricardo Silva FCUL
  46. Differential tracking on disinformation websites and its impact on search engine results Íris Damião IST
  47. Heavy baryon excitations with functional calculatiosn: Confirming CERN discoveries and predicting new states André Torcato IST
  48. Probing the nature of the neutrino with large scale dark matter detectors Kai Jenkins UC
  49. Search for New Physics Phenomena at the ATLAS/LHC experiment with Anomaly Detection techniques based on Machine Learning Annalisa Berti UMinho
  50. Space Radiation in Low Earth Orbit and Space Weather on board the Space Rider Cristiana Francisco UC
  51. Optimization of the sensitivity of the LZ and XLZD detectors for Xe-136 0𝝂𝛽𝛽 decay and low mass WIMP searches Sandro Saltão UC
  52. The Social Bayesian Brain: The roles of identity complexity and informational environment in belief updating Angela Rijo ISCTE
  53. Neutrinoless double-beta decay search with SNO+: Enhancing sensitivity through improved event reconstruction using Machine Learning Beymar Surco UC
  54. Study of the influence of natural elevated background radiation on the growth of mint in the region of Covilhã Lígia Lopes UBI
  55. Charting QCD jet evolution in extreme conditions Nuno Olavo IST
  56. Advanced Methods for Solar Energetic Particle Events Characterization in the Inner Solar System António Pessanha Gomes IST
  57. Search for anomalous couplings in the HWW vertex with the ATLAS detector at the LHC Marina Kholodenko IST
  58. Probing the primordial quark gluon plasma with heavy flavour Henrique Legoinha IST
  59. Are radiocesium and natural radioisotopes ( 238U and progeny, 232Th and progeny, 40K, 7Be) good tracers to understand the erosion processes and dispersion of contaminants in Serra da Estrela? Radioprotection concern? Caroline Licour UBI
  60. Cancer weapons against neurodegeneration Francisca Afonso FCUL
  61. PicoMonitoring: sub-ns FLASH beam monitoring with Si devices Rui Fernandez IST
  62. Thermal and Optomechanical Design Improvement of Hera Mission LIDAR for Near-Earth Object Observation Pedro Conceição UBI
  63. Structural Health Monitoring System (SHM) for Reusable Spacecrafts Geraldo Rodrigues IST
  64. Space Debris algorithms on satellite constellation pictures for debris characterisation and orbit determination Joel Filho UC
  65. PhysiVerse - Leveraging Virtual Reality for Enhanced Physics Education José Graça FCUL
  66. Jet physics in the precision era of heavy-ion collision Marco Leitão IST
  67. Characterization of the energy spectrum of extensive air showers with the Pierre Auger Observatory data. Milton Freitas IST
  68. Measurements of Higgs boson properties and search for BSM physics Raphaël Guitton IST
  69. Cosmic-ray isotopic composition measurements with the Alpha Magnetic Spectrometer on the International Space Station João Carlos Antunes IST
  70. Development of a timing RPC-based neutron detector Giorgio Canezin UC
  71. SpaceRAD &#821.1.; An Integrated Framework for the Radiation Environment in Space, on Mars and on the Moon and its Implications for Human Space Flight Bruna Lima IST
  72. Development of a cubesat constelation payload detector demonstrator with polarimetric capabilities José Sousa UC
  73. Satellite avionics for navigation and space awareness applications Beltrán Arribas UBI

Master Thesis

Finished

  1. Vasco Neto – MSc, “Probing the Anti-Sickling Power of Distinct Drugs in Sickle Cell Disease”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  2. Inês Gomes – MSc, “Probing the Stability of Biomolecules in Deep Eutectic Solvents”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  3. Catarina Nascimento – MSc, “Molecular Mechanisms of Amyloid Aggregation in Neurodegenerative Diseases”, scientific advisor, Biochemistry and Biomedicine MSc, FCUL
  4. 11/2024, Computational Modeling of Biopharmaceuticals Purification Systems, Jéssica Rodrigues, Master in Computational Biology and Bioinformatics, FCT UNL.
  5. Designing Optimal 3D Enzyme Computational Models for Efficient Plastic Degradation Student: Mariana Gomes Fernandes (Supervisor Principal: João Carneiro; Co-Supervisor: Sérgio F. Sousa e Diogo Pratas) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Dezembro de 2024
  6. Machine Learning Enhanced Optimization of Plastic-Degrading Enzymes for Sustainable Ocean Cleanup Student: Ana Clara Cerqueira (Supervisor Principal: João Carneiro; Co-Supervisor: Sérgio F. Sousa e Diogo Pratas) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Dezembro de 2024
  7. Discovery of New Molecules for the Treatment of Machado-Joseph Disease Student: Filipe Rocha Mestrado: Medicinal Chemistry (Supervisor Principal: Sérgio F. Sousa; Co-Supervisor: Fernanda Proença) Universidade do Minho, Portugal Dezembro de 2024
  8. Designing In-Silico Aptamers for Potential Use in Marine Bioremediation Student: Rafael Vieira Mestrado: Bioinformatics and Computational Biology (Supervisor Principal: Sérgio F. Sousa; Co-Supervisor: João Carneiro e Diogo Pratas) Faculdade de Ciências da Universidade do Porto, Portugal Novembro 2024
  9. Desenvolvimento de nanomateriais hidrofílicos de carbono com propriedades biomiméticas de enzimas antioxidantes Student: Andreia Daniela Rosa Veloso (Supervisor Principal: Maria C. Oliveira; Co-Supervisors: Nuno Cerqueira e Romeu Videira) Doutoramento: Doutoramento em Ciências Químicas e Biológicas (PhD) Universidade de Trás-os-Montes e Alto Douro, Portugal Novembro de 2024
  10. Evaluation of acute hepatic toxicity and inflammation induced by nitrosamines in Mus musculus and Danio rerio Student: Isabelly Annunciato (Supervisor Principal: Marcos Hikari Toyama; Co-Supervisor: Sérgio Sousa) Mestrado: Biodiversity in Coastal Environments Institute of Biosciences, Paulista State University, Brazil Agosto de 2024
  11. Lohmann D (2023-2024, main supervisor). Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios. MSc in Computational Biology and Bioinformatics thesis. NOVA School of Science and Technology, NOVA University of Lisbon, Portugal. 91 pp. Supervisor team Dr. Carolina Madeira and Pedro M. Costa. Funded by project EASMO BiodivClim/0001/2019. Defended 17-12-2024. http://hdl.handle.net/10362/182661
  12. Lopes J (2023-2024, co-supervisor). Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats. MSc in Computational Biology and Bioinformatics. NOVA School of Science and Technology, NOVA University of Lisbon, Portugal. 116 pp. Supervisor team Pedro M. Costa and Dr. Carolina Madeira. Funded by project ExtremeOceans PTDC/BIA-BMA/1494/2020. Defended 05-12-2024. http://hdl.handle.net/10362/181947
  13. Catarina Bernardo, MSc in Evolutionary and Developmental Biology, Ciências (09.2023-02.2024) Thesis: Signatures of adaptation at the mitochondrial level in endemic freshwater fish species from contrasting environments.
  14. Optimization of an Oscillating Water Column (OWC) pneumatic efficiency testing different geometries using CFD, Diana Arias, Instituto Superior Técnico, 2024
  15. Reconstrução de Eventos de Neutrinos Solares com Técnicas de Aprendizagem de Máquina Usando Dados da Experiência SNO+ Joan Kladnik Orientador: Nuno Barros 2024-12-06 UMinho
  16. Estudo da dispersão de partículas alfa em filmes finos Ana Campos Orientador: Luis Peralta 2024-01-05 FCUL
  17. Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission Francisca Santos Orientador: Patrícia Gonçalves 2024-07-01 IST
  18. search for dark matter (spin 1) João Lopes Carreira Orientador: António Onofre 2024-12-31 FCUL
  19. Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro Fábio do Carmo Orientador: Jorge Sampaio 2024-01-29 FCUL
  20. Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations Joana Vences Orientador: José Maneira 2024-12-27 FCUL
  21. Construção de um protótipo para o estudo da exalação de radão por materiais de construção Nuno Taborda Orientador: Luis Peralta 2024-01-11 FCUL
  22. Particle-Particle and Jet-Jet Angular Correlations at the Parton Level http://hdl.handle.net/10451/65219 Guilherme Calé Orientador: Grigorios Chachamis 2024-06-30 FCUL
  23. Integration of the HiRezBrainPET with a clinical PET/CT system – Image performance evaluation of a prototype for next-generation brain tomography Miguel Lopes Orientador: Patrícia Gonçalves 2024-07-01 IST
  24. Interlock electronics for the high Granularity Timing Detector od the ATLAS Maria Miguel Orientador: Ricardo Gonçalo 2024-02-28 UC
  25. Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider https://hdl.handle.net/10400.5/95506 Joana Reis Orientador: João Nuno Pires 2024-07-25 FCUL
  26. Pre-equilibrium of the Quark-Gluon Plasma Guilherme Crispim Orientador: Liliana Apolinário 2024-07-02 IST
  27. The deuteron as a six-quark state in QCD André Nunes Orientador: Ana Arriaga 2024-01-12 FCUL
  28. Searching for beyond Standard Model particles decaying to muon pairs in SND@LHC Henrique Santos Orientador: Nuno Leonardo 2024-11-28 IST
  29. Design and benchmark of an innovative concept to measure light charged particles in the R3B/FAIR using RPCs Diogo Miguel Orientador: Daniel Galaviz 2024-12-19 FCUL
  30. Planing for muon tomography campaigns in urban settings Francisco Manuel Ferreira Orientador: Sofia Andringa 2024-12-03 IST
  31. 3D imaging from underground with muon tomography Isabel Alexandre Orientador: Sofia Andringa 2024-12-03 IST
  32. Event Selection and Angular Reconstruction for W Boson Events at Future e+e− Colliders André Silva Orientador: Ricardo Gonçalo 2024-09-27 UC
  33. Thermal Analysis and Effects on Resolution of CZT Detectors exposed to LEO Conditions on board the International Space Station https://hdl.handle.net/10316/117946 Alexandra Roque Orientador: Rui Curado Silva 2024-09-30 UC
  34. Proton range verification for irradiation of anthropomorphic phantoms implemented in Geant4 Monte Carlo simulations Francisco Miguéis Orientador: Paulo Crespo 2024-09-23 UC
  35. New Physics searches at the LHC using Anomaly Detection Inês Moreira Orientador: Rute Pedro 2024-11-28 IST
  36. Quantum computing applications to quantum chromodynamics: Jet evolution in a quantum computer Gabriela Oliveira Orientador: Nuno Castro 2024-07-25 UMinho
  37. Anomaly detection as a quality control tool in an industrial context Miguel Peixoto Orientador: Nuno Castro 2024-12-11 UMinho
  38. Biophysical modelling and simulation of BFE/Au multifunctional nanoplatforms for proton therapy Bianca Alves Orientador: Jorge Sampaio 2024-12-19 FCUL
  39. Robust Anomaly Detection in Independent Searches for New Physics with the ATLAS/LHC Experiment Inês Pinto Orientador: Rute Pedro 2024-11-28 IST
  40. Improving the vacuum baseline for in-medium jet physics studies Diogo Costa Orientador: Liliana Apolinário 2024-11-27 IST
  41. Development of digital techniques for data processing and instrument control Gil Ramos Madeira Orientador: Nuno Barros 2024-09-30 UC
  42. Procura de acoplamentos anómalos do bosão de Higgs com o detetor ATLAS Marta Silva Orientador: Inês Ochoa 2024-12-03 IST
  43. Assembly and beam commissioning of the high rate TOF/SCI detector SAFARI Beatriz Amorim Orientador: Daniel Galaviz 2024-10-25 FCUL
  44. O Radão e a Radioatividade: presente no quotidiano e ausente no currículo escolar Carolina Rosa Orientador: Sandra Soares 2024-07-15 UBI
  45. Study of the hadronic interaction in the fixed-target experiment AMBER (CERN) Ema Fadiga Orientador: Carlos Azevedo 2024-12-02 UA
  46. In-medium Gluon Radiation in General Kinematics Afonso Guerreiro Orientador: Guilherme Milhano 2024-12-03 IST
  47. Multichannel study of cosmic ray variability over different temporal scales http://fisgeo.unipg.it/pacetti/3-LM-Margherita-Fioroni.pdf Margherita Fioroni Orientador: Nicola Tomassetti 2024-04-18 UniPerugia
  48. Using embeddings to infer diagnostics from medical prescriptions https://fenix.tecnico.ulisboa.pt/cursos/mecd/dissertacao/1972678479056342 Tiago Miranda Orientador: Joana Gonçalves-Sá 2024-11-18 IST
  49. Higgs boson properties and tau lepton identification at the 3 TeV Muon Collider http://cds.cern.ch/record/2913377 Lorenzo Valla Orientador: Michele Gallinaro 2024-09-30 LIPL
  50. Investigation of the Operation Modes of Optoelectronic Oscillators based on Resonant Tunnelling Diodes https://repositorio.ulisboa.pt/handle/10400.5/97384 Tiago Ferro Orientador: José Figueiredo 2024-07-01 FCUL
  51. Modelling the Evolution of the Galactic Disk Scale Height Traced by Open Clusters https://repositorio.ulisboa.pt/handle/10451/64671 Sandro Moreira Orientador: André Moitinho 2024-04-01 FCUL
  52. E(xtraterrestris). Coli : adapting genome-scale metabolic models to non-standard thermodynamical constraints http://hdl.handle.net/10451/64476 Lucas Monteiro Orientador: André Moitinho 2024-03-01 FCUL
  53. Galactic and Extragalactic Insights: A Visualisation Approach to Gaia Data Exploitation http://hdl.handle.net/10400.5/97170 Maria Eduarda Pimentel Orientador: André Moitinho 2024-04-01 FCUL
  54. Assessment of wave overtopping at Praia da Vitória, Terceira, Azores, with SWASH model, by DINUSH SHAYAMAN PRIYANKER BADDAVIDANA, Master’s in Coastal Hazards, Risks, Climate Change Impacts and Adaptation, UAlg, Delft. Submitted for defence.

Ongoing

  1. Duque A (2024 to present, main supervisor). Computational tools to assess adaptation and resilience to thermal stress in intertidal fish: a functional genomics approach. MSc in Computational Biology and Bioinformatics. NOVA School of Science and Technology, Portugal. Supervisor team Dr. Carolina Madeira and Prof. Pedro M. Costa. Funded by project ExtremeOceans PTDC/BIA-BMA/1494/2020. (status – ongoing).
  2. Estêvão Faustino, MSc in Evolutionary and Developmental Biology, Ciências (09.2023-03.2025) Thesis: Unravelling hybridization dynamics of Iberian chubs through demographic modelling.
  3. searck for dark matter with top quarks Gonçalo Freitas Orientador: António Onofre FCUL
  4. Study of neutrino interactions in the LZ Dark Matter detector Natalija Novak Orientador: Alexandre Lindote UniGraz
  5. Life prospection on Mars - Studing the Martian Subsurface Radiation Environment Igor Miguel Gago Orientador: Patrícia Gonçalves IST
  6. The soft-hard antenna spectrum in presence of a QGP Tomás Cabrito Orientador: Guilherme Milhano IST
  7. Gamma-ray Polarization in BL Lac Objects with AMEGO André Neves Orientador: Rui Curado Silva FCTUC
  8. Simulations and benchmark of a fast neutron detector for nuclear astrophysics Carolina Felgueiras Orientador: Daniel Galaviz FCUL
  9. Isotope Studies with the Alpha Magnetic Spectrometer (AMS) Guilherme Gaspar Orientador: Fernando Barão IST
  10. Configuration of the Interlock-FPGA for the HGTD Detector Rui Vieira Orientador: Helena Santos IST
  11. Configuration of the Monitoring FPGA for the HGTD Interlock Alexandre Parreira Orientador: Helena Santos IST
  12. Heavy Quarks Formation time Inês Alexandre Serra Orientador: Liliana Apolinário IST
  13. THOR Project Scientific Payload Environmental Tests Validation Mário Cainé Orientador: Rui Curado Silva UC
  14. Polarimetry with THOR-SR Mission CdTe Gamma-Ray Tracker Development Models Mariana Letra Orientador: Rui Curado Silva UC
  15. Associated production of Dark Matter with heavy fermions at the RUN3 of the LHC https://hdl.handle.net/1822/92171 Rui Miguel Silva Orientador: António Onofre UMinho
  16. Space Rider maiden flight orbital particles identification using machine learning techniques Joana da Orada Orientador: Rui Curado Silva UC
  17. Acceleration of the ATLAS Calorimeter Calibration Algorithms using GPUs Bruno Semião Orientador: Patricia Conde IST
  18. Search for central exclusive production of tau+ tau- pairs in proton-proton collisions at the LHC Madalena Ferreira Orientador: Jonathan Hollar UA
  19. 116Sn(p,g)117Sb reaction cross-section determination at energies relevant for the astrophysical p-process using gamma- and X-rays emission yields Ricardo Pires Orientador: Daniel Galaviz FCUL
  20. Charmonium production in hadron collisions at the COMPASS experiment Bárbara Pereira Orientador: Catarina Quintans FCUL
  21. Antiproton production in proton on helium collisions at the AMBER Experiment Guilherme Almeida Orientador: Catarina Quintans FCUL
  22. AMEGO science potential and impact on aviation safety of TGF analysis Filipa Bessa Almeida Orientador: Rui Curado Silva UC
  23. Towards the neutrinoless double-beta decay study with SNO+: radioactive background characterisation with SNO+ scintillator data Manuel Abreu Orientador: Valentina Lozza IST
  24. Characterization of anomalous air shower events in SWGO Inês Martins Orientador: Ruben Conceição IST
  25. THOR OBC Scientific Operations Pedro Carmo Orientador: Rui Curado Silva UC
  26. Imagiologia por raios gama espontâneos para verificação de alcance de feixes de hélio Gegimma José Orientador: Paulo Crespo UC
  27. Future collider calorimeter optimisation with machine learning Bruno Rodrigues Orientador: Inês Ochoa FCUL
  28. Celestial Objects Position Compton Reconstrunction with THOR Duarte Rodrigues Orientador: Rui Curado Silva UC
  29. Graphical Neural Learning applied to jets produced in heavy-ion collisions Pedro Esperanço Orientador: Helena Santos IST
  30. Deteção de Flashes de Raios-gama Terrestres para a Segurança Aérea Bruna Filipa Frade Jorge Orientador: Rui Curado Silva UC
  31. TBC Carolina Miranda Orientador: Gonçalo Ribeiro IST
  32. Análise dos registos de TGFs no espaço e a sua implicação no processo de emissão nas nuvens comulonimbus Henrique Gaspar Orientador: Rui Curado Silva UC
  33. Desenvolvimento de algoritmos de trigger com GPUs Gabriela Sereniski Orientador: José Rufino IPB
  34. Identification of UHE neutrino events in vertical air showers David Dias Orientador: Ruben Conceição IST
  35. Using Machine Learning algorithms to discriminate 0𝝂𝛽𝛽 decay and background events in xenon time projection chambers João António Rodrigues Orientador: Alexandre Lindote UC
  36. Pile-up event identification and rejection in SNO+: enhancing the signal to noise ratio Tomás Baltazar Orientador: Valentina Lozza IST
  37. Electronics for the High Granularity Timing Detector of the ATLAS Experiment Carlos Brito Orientador: Ricardo Gonçalo UC
  38. Impacto de atmosferas ricas em radão no crescimento e desenvolvimento da Mentha spicata Mariana Vicente Orientador: Sandra Soares UBI
  39. Aplicação de AI no steering de um Sistema de Secagem Industrial Leonor Martins Orientador: Francisco Neves UC
  40. Calorimetry studies at the Future Circular Collider Ariana Queda Orientador: Ricardo Gonçalo UC
  41. Design optimization for a flat-panel PET scanner with DoI capability Marta Simões Orientador: Patrícia Gonçalves IST
  42. Conceito de um detector baseado em nRPCs para neutrões epitérmicos e rápidos Jesús Villoria Orientador: Luís Margato UC
  43. Avaliação da taxa de exalação de radão de materiais de construção Thais Alves Orientador: Sandra Soares UBI
  44. Optimization of the local reconstruction in a high granular calorimeter using a heterogenous computing model Daniela Cardoso Orientador: Pedro Ferreira da Silva IST
  45. Search for new physics with forward protons at the LHC Pedro Batista Orientador: Jonathan Hollar FCUL
  46. Measurement of muon flux at the LHC Alexandre Mendonça Orientador: Nuno Leonardo IST

Patents

Datasets

  1. SeaTox toxin database [Version 12.2024.001]. Zenodo. doi:10.5281/zenodo.14355541).

Courses

  1. Course for Biochemistry BSc Degree: Introduction to Biomolecular Simulation, at FCT UNL. The course aims to introduce students to the field of biomolecular simulation. HPC computing time for students.

2023

International articles with referee

  1. Gonçalves, M., Bernardo, C., Bernardino, M., & Soares, C. G. (2022). Climate change impacts on the wave energy in the Azores Islands. Trends in Renewable Energies Offshore, 43-51.
  2. CAMPOS, S., RODRIGO, A.P., MOUTINHO CABRAL, I. MENDES, V., MANADAS, B., D'AMBROSIO, M. & COSTA, P.M. (2023). An exploration of novel bioactives from the venomous marine annelid Glycera alba. Toxins, 15, 655 (doi: 10.3390/toxins15110655).
  3. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano et al. (2023) "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Genome Medicine 15: 43. http://dx.doi.org/10.1186/s13073-023-01196-1.
  4. Santos, João Dourado; Sobral, Daniel; Pinheiro, Miguel; Isidro, Joana et al. (2023) “INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance”. Research Square. https://doi.org/10.21203/rs.3.rs-3556988/v1.
  5. Substitution Models of Protein Evolution with Selection on Enzymatic Activity Ferreiro D., Khalil R., Sousa S.F., and Arenas M. Molecular Biology and Evolution 41 (2) (2024) Article | DOI: 10.1093/molbev/msae026
  6. Exploiting Locusta migratoria as a source of bioactive peptides with anti-fibrosis properties using an in silico approach Teixeira C.S.S., Biltes R., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food and Function 15 (2) pp.493-502 (2023) Article | DOI: 10.1039/d3fo04246d
  7. Crystal structures of Streptomyces tsukubaensis sigma factor SigG1 and anti-sigma RsfG Leite J.P., Lourenco F., Oliveira R., Sousa S.F., Mendes M.V., and Gales L. Journal of Structural Biology 215 (4) (2023) Article | DOI: 10.1016/j.jsb.2023.108038
  8. In silico identification of novel PqsD inhibitors: promising molecules for quorum sensing interference in Pseudomonas aeruginosa Vieira T.F., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering 9 (1) pp.7-19 (2023) Article | DOI: 10.1039/d3me00107e
  9. Use of lysinated multiwalled carbon nanotubes with carbohydrate ligands as a doxorubicin nanocarrier: A molecular dynamics analysis Martins F.G., Thakur C.K., Karthikeyan C., Moorthy N.S.H.N., and Sousa S.F. Carbon Trends 12 (2023) Article | DOI: 10.1016/j.cartre.2023.100280
  10. Modulation of the functional interfaces between retroviral intasomes and the human nucleosome Mauro E., Lapaillerie D., Tumiotto C., Charlier C., Martins F., Sousa S.F., Metifiot M., Weigel P., Yamatsugu K., Kanai M., Munier-Lehmann H., Richetta C., Maisch M., Dutrieux J., Batisse J., Ruff M., Delelis O., Lesbats P., and Parissi V. mBio 14 (4) (2023) Article | DOI: 10.1128/mbio.01083-23
  11. An in silico approach to unveil peptides from Acheta domesticus with potential bioactivity against hypertension, diabetes, cardiac and pulmonary fibrosis Teixeira C.S.S., Villa C., Sousa S.F., Costa J., Ferreira I.M.P.L.V.O., and Mafra I. Food Research International 169 (2023) Article | DOI: 10.1016/j.foodres.2023.112847
  12. Structural, physicochemical and anticancer study of Zn complexes with pyridyl-based thiazolyl-hydrazones Araskov J.B., Maciejewska N., Olszewski M., Visnjevac A., Blagojevic V., Fernandes H.S., Sousa S.F., Puerta A., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-de-Luzuriaga J.M., Uguz O., Koca A., Todorovic T.R., and Filipovic N.R. Journal of Molecular Structure 1281 (2023) Article | DOI: 10.1016/j.molstruc.2023.135157
  13. TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa Carneiro J., Magalhaes R.P., de la Oliva Roque V.M., Simoes M., Pratas D., and Sousa S.F. Journal of Computer-Aided Molecular Design 37 (5-6) pp.265-278 (2023) Article | DOI: 10.1007/s10822-023-00505-5
  14. Susana Simões, Miguel Lino, Angela Barrera, Catarina Rebelo, Francesca Tomatis, Andreia Vilaça, Christopher Breunig, Andrea Neuner, João Peça, Ricardo González, Alexandra Carvalho, Stefan Stricker, and Lino Ferreira. ‘Near-infrared light-activated formulation for the spatial controlled release of CRISPR-Cas9 ribonucleoprotein for brain gene editing’, accepted in Angewandte Chemie.
  15. Ricardo D. González, Susana Simões, Lino Ferreira, and Alexandra T. P. Carvalho. ‘Designing Cell Delivery Peptides and SARS-CoV-2-Targeting Small Interfering RNAs: A Comprehensive Bioinformatics Study with Generative Adversarial Network-Based Peptide Design and In Vitro Assays’, Molecular Pharmaceutics, 2023, 20, 12, 6079–6089, doi:10.1021/acs.molpharmaceut.3c00444.
  16. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Insights into the Degradation of Polymer–Drug Conjugates by an Overexpressed Enzyme in Cancer Cells’, Journal of Medicinal Chemistry, doi: 10.1021/acs.jmedchem.2c01781.
  17. Teodoro, M. C., Conceição, E. M., Sinval, J., de Lourdes, M., & Neufeld, C. B. (2023). Adaptation, confirmatory factor analysis, and psychometric properties of the Brazilian version of the Repetitive Eating Questionnaire. International Journal of Eating Disorders. https://doi.org/10.1002/eat.23943
  18. Mixão, V., Pinto, M., Sobral, D. et al. ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Genome Med 15, 43 (2023). https://doi.org/10.1186/s13073-023-01196-1
  19. João Dourado Santos, Daniel Sobral, Miguel Pinheiro et al. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance, 07 November 2023, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-3556988/v1]
  20. Carvalho J., Faria R., Butlin R.K., Sousa V.C. (2023) poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.14185
  21. Carvalho J., Morales H., Faria R., Butlin R.K., Sousa V.C. (2023) Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13834
  22. Casanova, J., Sinval, J., & Almeida, L. (2024). Éxito académico, compromiso y autoeficacia de los estudiantes universitarios de primer año: variables personales y desempeño del primer semestre. Anales de Psicología / Annals of Psychology, 40(1), 44–53. https://doi.org/10.6018/analesps.479151
  23. F.J.A.L. Cruz and J.P.B. Mota, "Partial Denaturation of Double-Stranded DNA on Pristine Graphene under Physiological-like Conditions", Liquids 2023, 3, 168.
  24. F.J.A.L. Cruz and J.P.B. Mota, “Structure and Thermodynamics of Empty Clathrate Hydrates bellow the Freezing Point of H2O”, 14th Int. Chem. Bio. Eng. Conference, Bragança, Portugal, September 2023.
  25. Wang, S., Islam, H., Abdelwahab, H.S., Guedes Soares, C., 2024. Uncertainty analysis of CFD solver for predicting ship responses in head waves, in preparation.
  26. Gomes I., Galamba N., Protein Stability in a Natural Deep Eutectic Solvent: Preferential Hydration or Solvent Slaving?, J. Chem. Phys., 159, 235101, 2023 (URL: https://doi.org/10.1063/5.0177095)
  27. Neto V., Victor BL. , Galamba N., Cyclic Peptides as Aggregation Inhibitors for Sickle Cell Disease, J. Med. Chem., 66, 23, 16062–16074, 2023 (URL: https://doi.org/10.1021/acs.jmedchem.3c01484)
  28. Martins, G., Nascimento, C., Galamba, N., Mechanistic Insights into Polyphenols’ Aggregation Inhibition of α-Synuclein and Related Peptides, ACS, Chem. Neurosci., 14, 10, 1905–1920, 2023 (URL: https://doi.org/10.1021/acschemneuro.3c00162)
  29. Monteiro, H., Paiva, A., Duarte, R.C., Galamba, N., On the not so anomalous water-induced structural transformations of choline chloride–urea (reline) deep eutectic system, Physical Chemistry Chemical Physics 25 (1), 439-454, 2023 (URL: https://doi.org/10.1039/D2CP04139A)
  30. Dias, A. M. G. C., Moreira, I. P., Lychko, I., Soares, C. L., Nurrito, A., Barbosa, A. J. M., Lutz-Bueno, V., Mezzenga, R., Carvalho, A. L., Pina, A. S. & Roque, A. C. A. (2023). Hierarchical self-assembly of a reflectin-derived peptide. Front. Chem., 11.
  31. Almeida, J., Palma, C., Félix, P.M., Brito, A.C. (2023). Long-term variation of dissolved metals and metalloid in the waters of an Atlantic mesotidal estuary (Sado Estuary, Portugal). Marine Pollution Bulletin, 188, 114615. HYPERLINK "https://doi.org/10.1016/j.marpolbul.2023.114615"https://doi.org/10.1016/j.marpolbul.2023.114615
  32. Brito, A.C., Pereira, H., Picado, A., Cruz, J., Cereja, R., Biguino, B., Chainho, P., Nascimento, A., Carvalho, F., Cabral, S., Santos, C., Palma, C., Borges, C:, Dias, J.M. (2023). Increased oyster aquaculture in the Sado Estuary: how to ensure ecosystem sustainability? Science of the Total Environment, 855, 158898.
  33. Favareto, L., Brotas, V., Rudorff, N., Zacarias, N., Tracana, A., Lamas, L., Nascimento, A., Ferreira, A., Gomes, M., Borges, C., Palma, C., Brito, A.C. (2023). Response of phytoplankton to coastal upwelling: the importance of temporal and spatial scales. Limnology and Oceanography, 68, 1376-1387. https://doi.org/10.1002/lno.12353
  34. Ferreira, A., Garrido, S., Costa, J.L., Teles-Machado, A., Brotas, V., Brito, A.C. (2023). What drives the recruitment of European sardine in Atlanto-Iberian waters (SW Europe)? Insights from a 22-year analysis. Science of the Total Environment, 881, 163421. HYPERLINK "https://doi.org/10.1016/j.scitotenv.2023.163421"https://doi.org/10.1016/j.scitotenv.2023.163421.
  35. Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Pereira, E., Belo, A.F., Portela, T., Telhado, A., & Quintella, B.R. Upstream movement of juvenile eels (Anguilla anguilla L.) in a southwestern European river. Environ Biol Fish 106, 1313–1325. https://doi.org/10.1007/s10641-023-01417-x
  36. França, S. Changes in the Functional Role of the Tejo Estuary (Portugal, Europe) According to Fish Ecological Guilds. Fishes 2023, 8, 545. https://doi.org/10.3390/fishes8110545
  37. João M. Miranda, Guilherme Osswald, Fernando A. Castro, Rui A. Rego, (2023). OpenFOAM validation for indoor ventilation applications, CILAMCE-2023, Proceedings of the XLIV Ibero-Latin-American Congress on Computational Methods in Engineering, ABMEC Porto, Portugal.
  38. Machine learning approach to the background reduction in singly charged cosmic-ray isotope measurements with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA (2023) 168644 10.1016/j.nima.2023.168644
  39. The ATLAS Experiment at the CERN Large Hadron Collider: A Description of the Detector Configuration for Run 3 ATLAS Collaboration (R. Pedro et al.) CERN-EP-2022-259 10.48550/arXiv.2305.16623
  40. Laser Calibration of the ATLAS Tile Calorimeter during LHC Run 2 R. Pedro, B. Pereira et al. JINST 18 (2023) 06, P06023 10.1088/1748-0221/18/06/P06023
  41. Search for pair-production of vector-like quarks in pp collision events at  TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector ATLAS Collaboration (N. Castro, T. Vale et. al ) Phys. Lett. B 843 (2023) 138019 10.1016/j.physletb.2023.138019
  42. Search for single production of vector-like T quarks decaying into Ht or Zt in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro et al.) J. High Energy Phys. 8 (2023) 153 10.1007/JHEP08(2023)153
  43. Search for flavor-changing neutral-current couplings between the top quark and the Z boson with proton-proton collisions at √ s = 13 TeV with the ATLAS detector ATLAS Collaboration (N. Castro, A. Peixoto et al) Phys. Rev. D 108, 032019 10.1103/PhysRevD.108.032019
  44. Anomaly detection search for new resonances decaying into a Higgs boson and a generic new particle X in hadronic final states using s√=13 TeV pp collisions with the ATLAS detector ATLAS Collaboration (I. Ochoa et. al. ) Phys. Rev. D 108 (2023) 052009 10.1103/PhysRevD.108.052009
  45. Luminosity determination in pp collisions at s√=13 TeV using the ATLAS detector at the LHC ATLAS Collaboration (R. Pedro et al.) Eur. Phys. J. C 83 (2023) 982 10.1140/epjc/s10052-023-11747-w
  46. Demonstrating Agreement between Radio and Fluorescence Measurements of the Depth of Maximum of Extensive Air Showers at the Pierre Auger Observatory The Pierre Auger Collaboration PRL (sibling of the PRD)
  47. Ground observations of a space laser for the assessment of its in-orbit performance The Pierre Auger Collaboration Optica
  48. Ultra high energy cosmic rays The intersection of the Cosmic and Energy Frontiers A. Coleman et al. (98 authors) Astropart Phys. 147 (2023) 102794 10.1016/j.astropartphys.2023.102819
  49. A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory Pierre Auger Collaboration (379 authors) Astrophysical Journal Supplement 264 (2023) 2, 50 10.3847/1538-4365/aca537
  50. Universality of the muon component of extensive air showers Lorenzo Cazon, Ruben Conceição and Felix Riehn JCAP03(2023)022 10.1088/1475-7516/2023/03/022
  51. Outdoor systems performance and upgrade L. Lopes et al., NIMA 1054, 168446, 2023 10.1016/j.nima.2023.168446
  52. Development of the CMS detector for the CERN LHC Run 3 CMS Collaboration arXiv:2309.05466, accepted for publication in the Journal of Instrumentation.
  53. Sub-25 ps timing measurements with 10 x 10 cm2 PICOSEC Micromegas detectors M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167687 10.1016/j.nima.2022.167687
  54. Towards robust PICOSEC Micromegas precise timing detectors M.Gallinaro et al. JINST 18 (2023) 07, C07018
  55. A large area 100-channel PICOSEC Micromegas detector with time resolution at the 20 ps level M.Gallinaro et al. JINST 18 (2023) 07, C070
  56. Search for top squarks in the four-body decay mode with single lepton final states in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) J. High Energy Phys. 6 (2023) 60 10.1007/JHEP06(2023)060
  57. Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at root s=13 TeV CMS Collaboration (2373 authors) Phys. Lett. B 842 (2023) 137531 10.1016/j.physletb.2022.137531
  58. Search for high-mass exclusive gammagamma->WW and gammagamma->ZZ production in proton-proton collisions at 13 TeV CMS and TOTEM Collaborations JHEP 07 (2023) 229
  59. Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations JINST 18 (2023) 09, P09009
  60. A next-generation liquid xenon observatory for dark matter and neutrino physics J. Aalbers et al. (599 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 013001 10.1088/1361-6471/ac841a
  61. Energy resolution of the LZ detector for high-energy electronic recoils G. Pereira et al J. Instrum. 18 (2023) C04007 10.1088/1748-0221/18/04/C04007
  62. The MIGDAL experiment: Measuring a rare atomic process to aid the search for dark matter H. M. Araujo et al. (36 authors) Astropart Phys. 151 (2023) 102853 10.1016/j.astropartphys.2023.102853
  63. First Dark Matter Search Results from the LUX-ZEPLIN (LZ) Experiment J. Aalbers et al. (LUX-ZEPLIN Collaboration) Phys. Rev. Lett. 131 (2023) 041002 10.1103/PhysRevLett.131.041002
  64. Production and optical characterisation of blended Polyethylene Tethraplate (PET)/Polyethylene Naphtalate (PEN) scintillator samples P. Conde Muíño, J. A. Covas, A. Gomes, L. Gurriana, R. Machado, T. Martins, P. Mendes, R. Pedro, B. Pereira, A. J. Pontes, H. Wilkens arXiv:2312.14790
  65. Dual-Polarity Ion Drift Chamber: Experimental results with Xe-S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 10.1016/j.nima.2022.167575
  66. A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 10.1016/j.nima.2022.167603
  67. The new HADES ToF Forward Detector A. Blanco et al., NIMA 1050, 168182, 2023 10.1016/j.nima.2023.168182
  68. Evaluation of effective dose for gamma-rays of Terrestrial Gamma-ray Flashes in aviation: spectral- and atmosphere-effects J.M. Maia, R.M. Curado da Silva, Joana Mingacho Radiation Physics and Chemistry 215 (2024) 111332
  69. First results on FHM - a Floating Hole Multiplier V. Chepel, G.Martinez-Lema, A.Roy, A.Breskin J. Instrum. 18 (2023) P05013 10.1088/1748-0221/18/05/P05013
  70. Timing resistive plate chambers for thermal neutron detection with 3D position sensitivity L. M. S. Margato, G. Canezin, A. Morozov, A. Blanco, J. Saraiva, L. Lopes, P. Fonte L. M.S. Margato et al., Nuclear Instruments and Methods in Physics Research Section A, Volume 1052, July 2023, 168267 10.1016/j.nima.2023.168267
  71. Low-energy physics in neutrino LarTPCs S. Andringa et al. (34 authors) J. Phys. G-Nucl. Part. Phys. 50 (2023) 033001 10.1088/1361-6471/acad17
  72. Evidence of antineutrinos from distant reactors using pure water at SNO+ SNO+ Collaboration Phys. Rev. Lett. 130, 091801 (2023) 10.1103/PhysRevLett.130.091801
  73. Measurement of the total neutron cross section on argon in the 20 to 70 keV energy range S. Andringa, et al (ARTIE Collaboration) Phys. Rev. C 108, L011601 10.1103/PhysRevC.108.L011601
  74. Heavy Baryon Spectroscopy in a Quark-Diquark Approach A. Torcato, A. Arriaga, G. Eichmann, M. T. Peña Few-Body Sys. 64, 45 (2023) https://doi.org/10.1007/s00601-023-01826-9
  75. Intensity Ratio of Kβ/K$$\alpha$$ in Selected Elements from Mg to Cu, and the Chemical Effects of Cr K$$\alpha$$1,2 Diagram Lines and Cr Kβ/K$$\alpha$$ Intensity Ratio in Cr Compounds Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, T. Shoji, K. Słabkowska, Ł. Syrocki , M. Polasik, J. P. Gomilsek, J. P. Marques, J. M. Sampaio,  M. Guerra, J. Machado, J. P. Santos, A. Hamidani, A. Kahoul, P. Indelicato, and F. Parente Ito, Y.; Tochio, T.; Yamashita, M.; Fukushima, S.; Shoji, T.; Słabkowska, K.; Syrocki, Ł.; Polasik, M.; Gomilsek, J.P.; Marques, J.P.; et al. Intensity Ratio of Kβ/Kα in Selected Elements from Mg to Cu, and the Chemical Effects of Cr Kα1,2 Diagram Lines and Cr Kβ/Kα Intensity Ratio in Cr Compounds. Int. J. Mol. Sci. 2023, 24, 5570. https://doi.org/10.3390/ijms24065570 10.3390/ijms24065570
  76. Diverse mechanisms in proton knockout reactions from the Borromean nucleus 17Ne F. Wamers, C. Lehr, J. Marganiec-Galazka, et al. (62 authors) Eur. Phys. J. A 59, 154 (2023) 10.1140/epja/s10050-023-01063-y
  77. Suppression of Coulomb-nuclear interference in the near-barrier elastic scattering of 17Ne from 208Pb J. Díaz-Ovejas, I. Martel, D. Dell'Aquila, et al. (40 authors) Phys. Lett. B 843 (2023) 138007 10.1016/j.physletb.2023.138007
  78. Opacities of singly and doubly ionized neodymium and uranium for kilonova emission modeling A Flörs, R F Silva, J Deprince, H Carvajal Gallego, G Leck, L J Shingles, G Martínez-Pinedo, J M Sampaio, P Amaro, J P Marques, S Goriely, P Quinet, P Palmeri, M Godefroid Monthly Notices of the Royal Astronomical Society, Volume 524, Issue 2, September 2023, Pages 3083–3101 10.1093/mnras/stad2053
  79. The first PET glimpse of a proton FLASH beam F. Abouzahr, J.P. Cesar, P. Crespo, M.J. Gajda, Z. Hu , W. Kaye, K. Klein, A. Kuo, S. Majewski, O.R. Mawlawi, A. Morozov, A. Ojha, F. Poenisch, J.C. Polf, M. Proga, N. Sahoo, J. Seco, T. Takaoka, S. Tavernier, U. Titt, X. Wang, X.R. Zhu, K. Lang Phys. Med. Biol. 68 (2023) 125001 10.1088/1361-6560/acd29e
  80. Double J /$$\Psi$$ production in pion-nucleon scattering at COMPASS G.D. Alexeev et al. (COMPASS Coll.) Phys. Lett B 838 (2023) 137702 10.1016/j.physletb.2023.137702
  81. Jet substructure observables for jet quenching in Quark Gluon Plasma: a Machine Learning driven analysis Miguel Crispim Romão, José Guilherme Milhano, Marco van Leeuwen e-Print: 2304.07196 [hep-ph]
  82. The Forward Physics Facility at the High-Luminosity LHC J. L. Feng, F. Kling, M. H. Reno, et al. (including G. Chachamis) J.Phys.G 50 (2023) 3, 030501 10.1088/1361-6471/ac865e
  83. Medium-induced radiation with vacuum propagation in the pre-hydrodynamics phase Carlota Andres, Liliana Apolinário, Fabio Dominguez, Marcos Gonzalez Martinez, Carlos A. Salgado JHEP 03 (2023) 189 10.1007/JHEP03(2023)189
  84. Low-pT quarkonium polarization measurements: Challenges and opportunities Pietro Faccioli, Ilse Kraetschmer, Carlos Lourenco Phys. Lett. B 840 (2023) 137871 10.1016/j.physletb.2023.137871
  85. Dilepton decays of vector particles Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 1-37 10.1007/978-3-031-08876-6_1
  86. Particle Polarization in High Energy Physics An Introduction and Case Studies on Vector Particle Production at the LHC Preface Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) IX-XI
  87. Reference frames and transformations Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 39-83 10.1007/978-3-031-08876-6_2
  88. A frame-independent study of the angular distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 85-120 10.1007/978-3-031-08876-6_3
  89. Meaning and interpretation of the frame-independent polarization Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 121-146 10.1007/978-3-031-08876-6_4
  90. Smearing effects in non-planar processes Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 147-172 10.1007/978-3-031-08876-6_5
  91. Polarization in cascade decays Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 173-242 10.1007/978-3-031-08876-6_6
  92. Two-body decay distributions beyond the dilepton case Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 243-281 10.1007/978-3-031-08876-6_7
  93. Alternative parametrization of the dilepton decay distribution Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 283-290
  94. Angular distributions of O -> i>V</igamma, with i>J</i(<iO</i) = J(V>)=1 and V -> l l |pigamma|pipi| ... Pietro Faccioli, Carlos Lourenco LECT NOTES PHYS 1002 (2023) 291-298
  95. Towards a muon collider Carlotta Accettura et al, including G. Chachamis, G. Da Molin, M.Gallinaro Eur.Phys.J.C 83 (2023) 9, 864 10.1140/epjc/s10052-023-11889-x
  96. Low projectile density contributions in the dilute-dense CGC framework for two-particle correlations Anderson Kendi Kohara, Cyrille Marquet, Víctor Vila JHEP 10 (2023) 159 10.1007/JHEP10(2023)159
  97. Field output correction factors of small static field for iba razor nanochamber Dalila Mateus, Carlo Greco and Luis Peralta Biomed. Phys. Eng. Express 10 015004 10.1088/2057-1976/ad0ae0
  98. Radioactivity in a bucket Luis Peralta Eur. J. Phys. 45 (2024) 015801 10.1088/1361-6404/ad0346
  99. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 167652, 2023 10.1016/j.nima.2022.167652
  100. A large-area MRPC detector for muon scattering tomography J. Saraiva et al. NIMA 1050, 168183, 2023 10.1016/j.nima.2023.168183
  101. An RPC-PET brain scanner demonstrator: First results Paulo Fonte et al NIMA 1051, 168236, 2023 10.1016/j.nima.2023.168236
  102. Resistive plate chambers for precise measurement of high-momentum protons in short range correlations at R3B M. Xarepe et al., NIM 1055, 168445, 2023 10.1016/j.nima.2023.168445
  103. Sealed (zero gas flow) resistive plate chambers Alberto Blanco, Paulo Fonte, Luis Lopes, Mario Pimenta Eur. Phys. J. Plus 138, 1021 (2023). 10.1140/epjp/s13360-023-04647-1
  104. Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector J. Saraiva, C. Alemparte, D. Belver, A. Blanco, J. Callon, J. Collazo, A. Iglesias, L. Lopes Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 1046 (2023) 167744 10.1016/j.nima.2022.167744
  105. Observation of collider muon neutrinos with the SND@LHC experiment SND@LHC Colaboration Phys. Rev. Lett. 131, 031802 10.1103/PhysRevLett.131.031802
  106. Exploring parameter spaces with artificial intelligence and machine learning black-box optimization algorithms Fernando Abreu de Souza, Miguel Crispim Romão, Nuno Castro, Mehraveh Nikjoo, Werner Porod Phys. Rev. D 107, 035004 10.1103/PhysRevD.107.035004
  107. Berry: A code for the differentiation of Bloch wavefunctions from DFT calculations Leander Reascos, Fábio Carneiro, André Pereira, Nuno Filipe Castro, Ricardo Mendes Ribeiro Computer Physics Communications 295 (2024) 108972 10.1016/j.cpc.2023.108972
  108. Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa Front. Artif. Intell. 6 (2023) 1268852 10.3389/frai.2023.1268852
  109. Intermediate levels of scientific knowledge are associated with overconfidence and negative attitudes towards science Simone Lackner, Frederico Francisco, Cristina Mendonça, André Mata and Joana Gonçalves-Sá Nat. Hum. Behav. 7 (2023) 1490-+ 10.1038/s41562-023-01677-8
  110. The effects of weather and mobility on respiratory viruses dynamics before and during the COVID-19 pandemic in the USA and Canada Irma Varela-Lasheras, Lília Perfeito, Sara Mesquita and Joana G Sá PLOS Digital Health 10.1371/journal.pdig.0000405
  111. The gamma/hadron discriminator LCm in realistic air shower array experiments R. Conceicao, P. J. Costa, L. Gibilisco, M. Pimenta, B. Tome Eur. Phys. J. C 83 (2023) 932 10.1140/epjc/s10052-023-12106-5

Oral Presentations

  1. COSTA, P.M. (2023). A century of research on environmental carcinogens: From legacy to emerging pollutants. II TOXRUN International Congress. Toxicology Research Unit – CESPU, Porto (Portugal), Abril de 2023.
  2. COSTA, P.M. (2023). Novel tools and old problems: Where do we stand after a century of research into environmental carcinogens? Ciclo de palestras do Doutoramento em Biociências. Universidade de Córdova (Espanha), Janeiro de 2023.
  3. 09/2023 - BeONE project: outcomes and impact. One Health EJP final meeting at the Ministry of Health (Paris, França)
  4. 03/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. OHEJP Dissemination Webinars: New Tools for Surveillance and Risk Assessment
  5. 08/2023 - ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
  6. 08/2023 - INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance. Annual Meeting of the National Reference Center for Genomic Sequencing and Bioinformatics, Italy. Hosted by the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "Giuseppe Caporale" (IZSAM). Teramo, Italy. November 8-9, 2023.
  7. Mendes, Sofia L.; Sousa Santos, Carla; Feulner, Philine G. D.; Sousa, Vitor C. (2023) Contrasting outcomes of hybridization in Iberian chubs revealed through whole genome data. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  8. Blanckaert, A; Sousa, VC (2023) Interactions between mechanisms of reproductive isolation. XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, Lisboa Portugal
  9. Cecília Roque Conference Oral - Nature Inspired Solutions in Health Biotechnology 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  10. Arménio Barbosa Conference Oral - A Molecular Modeling Perspective on the development of Synthetic Affinity ligands 2023-12-09 Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  11. Cecília Roque Conference Oral - A scalable method to purify reflectins from inclusion bodies 2023-11-08 ISPPP 2023, 5th-8th November 2023, Viena, Austria
  12. Margaria Dias Conference Oral - Reflectin-derived protopeptide: solvent modulation to promote different supramolecular assembly and materials. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  13. Iana Lychko Conference Oral - Characterization of dynamic self-assembly of reflectins 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  14. Gonçalo Teixeira Conference Oral - Odorant-binding proteins based sensors for Volatile Organic Compounds detection. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal Young Investigator Award
  15. Carlos Costa Conference Oral - Portugal Affinity reagents towards SARS-CoV-2. 2023-06-07 Affinity 2023, 5th -7th June 2023, Lisbon, Portugal
  16. Cátia Soares Conference Oral - Portugal Dynamic Self-Assembly characterization of reflectins. 2023-06-02 Biophysics Festival, 1st-2nd June 2023, Porto, Portugal
  17. Arménio Barbosa Conference Oral - Multiscale Modeling in Biophysics: Navigating techniques for optimal application, Biophysics Festival 2023, 1st-2nd June 2023, Porto, Portugal
  18. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Centaurium erythraea subsp. Majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus. Mitochondrial DNA Part B, 8(1), 86–90. https://doi.org/10.1080/23802359.2022.2160670
  19. Carvalho Leonardo, I., Alberti, A., Denoeud, F., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2023). The complete plastome of Glandora prostrata subsp. Lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus. Mitochondrial DNA Part B, 8(2), 270–273. https://doi.org/10.1080/23802359.2023.2175976
  20. Madeira C [presenter & corresponding] et al. (2023) Multilayer molecular networks in fish adaptation to labile environments. EcoSummit 2023 - Building a sustainable and desirable future - adapting to a changing land and seascape, 13th-17th june, Gold Coast, Australia
  21. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T. P. Carvalho. ‘Combining Drugs and Polymers for an in situ Prodrug Activation’, 6th Symposium in Medicinal Chemistry (University of Minho, 15th June 2023).
  22. Combination of Biomolecular Simulations with Experimental Studies for More Efficient Drug Discovery, 6th Symposium on Medicinal Chemistry of University of Minho: Drug Discovery in the 21st Century 2023/06/15 – (University of Minho, Portugal), Sérgio F. Sousa
  23. Combining multi-level biomolecular simulations with experimental data for drug discovery 8th PYChemM – Portuguese Young Chemists Meeting, 2023/05/17 – (Vila Real, Portugal) (Invited Keynote), Sérgio F. Sousa
  24. Use of QM/MM Methods in Dissecting the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Conference on Theory and Application of Computational Chemistry, 2023/09/08 (Sapporo, Japan), Sérgio F. Sousa
  25. Development of Biomolecular Simulation Protocols for Protein Recognition by DNA/RNA Sequences, Affinity2023 - 25th Meeting of the International Society of Molecular Recognition, 2023/05/07 (Lisbon, Portugal), Sérgio F. Sousa
  26. Use of DFT in the Study of Enzymatic Reaction Mechanisms, DFT@PT Meeting, 2023/05/25 (Coimbra, Portugal), Sérgio F. Sousa
  27. Application of QM/MM Methods to Understand the Role Played by Different Amino Acid Residues in the Catalytic Mechanism of Plastic PET degrading Enzymes, 5th Manchester Multiscale Conference – CCPBioSim, 2023/04/03 – (Manchester, UK), Sérgio F. Sousa
  28. Use of Biomolecular Simulations to Understand and Engineer Aptamer Recognition for Biomedical Applications 9th international Oxford conference on antisense and therapeutic nucleic acids, 2023/03/27 – (Oxford, UK), Sérgio F. Sousa
  29. Application of QM/MM Methods in the Study of the Catalytic Mechanism of Enzymes for Industrial Application, Quitel2023 - Montevideo, Uruguay - November 2023, Sérgio F. Sousa
  30. Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “An in-silico study on the pH-dependent structure of cationic peptide dendrimers and their potential as vectors for siRNA”, Protein Electrostatics 2023, Genoa, IT. 26-29 June 2023 (Oral)
  31. Advancements in the LouMu Project – Muography for Geological Surveys, Jornadas ICT 2023, 2023-02-02, Universidade do Minho, Braga, Pedro Teixeira
  32. Avanços no Projeto LouMu – Muografia para Levantamentos Geofísicos, 12º Simpósio de Meteorologia e Geofísica da APMG, 2023-03-20, IPMA, Lisboa, Pedro Teixeira
  33. Studying the origin of the elements with radioactive ion  beams at ISOLDE/CERN, Jornadas Doutorais do Departamento de Física 2023, 2023-03-30, Lisboa, Faculdade de Ciênica da Faculdade de Lisboa, Francisco Barba
  34. ATLAS Upgrade, 4th Workshop LIP-IGFAE 2023 Biblioteca Nacional, 2023-04-14, Lisboa, Helena Santos
  35. ChatGPT: desafios e oportunidades na ótica da comunicação de ciência, III Jornadas de Comunicação de Ciência da Universidade do Minho, 2023-04-29, online, Nuno Castro
  36. Manifesto para a ciência em Portugal: actualidade e ideias para o futuro (debate), 2023-05-16, Lisbon, Braga, Coimbra, Portugal, Joana Gonçalves-Sá
  37. O LIP e o CERN, Seminário Engenharia e Políticas Públicas FEUP, 2023-06-15, U.Porto, Porto, Mário Pimenta
  38. A novel neutron detection technology based on timing RPCs, 5th Doctoral Congress in Engineering, 15-16 June, 2023, University of Porto Faculdade de Engenharia, Universidade do Porto, Giorgio Canezin
  39. Anomaly Detection at ATLAS, ATLAS-PT, 2023-06-19, Coimbra, Inês Pinto
  40. TileCal ageing and calibration, ATLAS-PT, 2023-06-19, Coimbra, Beatriz Pinheiro Pereira
  41. R&D of the scintillator materials, ATLAS-PT meeting, 2023-06-19, Coimbra, Rudnei Machado
  42. Monotop searches and new Physics search with AFP, ATLAS-PT Meeting, 2023-06-19, Universidade de Coimbra, Maura Teixeira
  43. Anomaly Detection at ATLAS, ATLAS-PT meeting, 2023-06-19, Coimbra, Inês Pinto
  44. B-tagging in HI collisions, ATLAS-PT meeting, 2023-06-19, Coimbra, João Pedro Pires
  45. HGTD Interlock, ATLAS-PT meeting, 2023-06-19, Coimbra, Helena Santos
  46. TileCal DCS Report, ATLAS-PT meeting, 2023-06-19, Coimbra Portugal, Filipe Martins
  47. Repositório Pólen, Integrações, Jornadas FCCN 2023, 2023-06-27 Escola Naval, Portugal, Zacarias Benta
  48. Computing and Data Projects on digital Twins, Jornadas FCCN 2023, 2023-06-28, Escola Naval, Portugal, Jorge Gomes
  49. Advancing the Portuguese Scientific Community with INCD and Google Cloud, Jornadas FCCN 2023, 2023-06-29, Escola Naval, Alfeite, Jorge Gomes
  50. INCD - Overview of the activities in 2022, Ciência 2023, 2023-07-07, Aveiro, Portugal, Jorge Gomes
  51. INCD - Infraestrutura Nacional de Computação Distribuída, Ciência 2023, 2023-07-07, Universidade de Aveiro, Portugal, Jorge Gomes
  52. Searching for dark matter with the ATLAS detector using unconventional signatures, MAPFis Conference, 2023-07-24, Online, Maura Teixeira
  53. TGF and High-energy astrophysics Observatory for gamma-Rays on board the Space Rider (THOR-SR), XXXIII ENNA Encontro Nacional de Astronomia e Astrofisica, 2023-09-07, Coimbra, Portugal, Rui Curado Silva
  54. An effective and predictive model for the long-term variations of Cosmic Rays in the Heliosphere, 109º Congresso Nazionale, Società Italiana di Fisica, 2023-09-14, University of Salerno, Italy
  55. Round Table: The Importance and Opportunity of Advanced Computing Infrastructures for Research and Innovation, UT Austin Portugal Program Annual Conference 2023, 2023-10-24, Braga, INL, Nuno Castro
  56. Dados, análise e políticas: um novo sistema de vigilância epidemiológica, IV Congresso Nacional dos Médicos de Saúde Pública, 2023-10-26, Viseu, Portugal, Joana Gonçalves-Sá
  57. A Importância das Competências Digitais na Inteligência Artificial (roundtable), INCoDe.2030: Fórum das Competências Digitais, 2023-10-30, Porto, Portugal, Joana Gonçalves-Sá
  58. Infraestrutura Nacional de Computação Distribuída Novo Centro Operacional na UTAD, Encontro RNCA 2023, 2023-11-07, Universidade de Trás os Montes e Alto Douro, Vila Real, Portugal, Jorge Gomes
  59. Science in the Machine Era, Development in Action - Inspiring Embryonic Minds, 2023-11-10, Faculdade de Ciências, UL, Lisbon, Portugal, Joana Gonçalves-Sá
  60. Zapping projeto POLEN da FCT-FCCN, 10.º Fórum de Gestão de Dados de Investigação, 2023-11-15, Politécnico de Setúbal, Zacarias Benta
  61. Searching for dark matter with the ATLAS detector using unconventional signatures, MAPFis PhD Students Assessment, 2023-12-06, Universidade do Minho, Maura Teixeira
  62. O projeto AgriSpace, Copernicus para a Floresta e Agricultura em Portugal, 2023-12-19, Direção Geral do Território, João Pina

Proceeding in international conferences

  1. An Earlier Experiences Towards Optimizing Apache Spark Over Frontera Supercomputer.
    • Bernardo, S., Ruhela, A., Cazes, J., Harrell, S.L., Gomes, J.,
    • High Performance Computing. ISC High Performance 2023. Lecture Notes in Computer Science, vol 13999. Springer, Cham.
    • DOI: 10.1007/978-3-031-40843-4_29
  2. Prospects for VHE monitoring of Gamma-ray Bursts with SWGO
    • G. La Mura, U. Barres de Almeida, R. Conceição, A. de Angelis, F. Longo, M. Pimenta, E. Prandini, E. Ruiz-Velasco, B. Tomé, for the SWGO Collaboration
    • Proceedings of the Sixteenth Marcel Grossmann Meeting, World Scientific
    • DOI: 10.1142/9789811269776_0246
  3. Very high energy sky monitoring with the Southern Wide-field Gamma-ray Observatory
    • G. La Mura, U. Barres de Almeida and F. Longo
    • J. Phys.: Conf. Ser. 2429 012022, 12th Cosmic Ray International Seminar - CRIS 2022
    • DOI: 10.1088/1742-6596/2429/1/012022
  4. Very high energy sky monitoring with the Southern Widefield Gamma-ray Observatory
    • Giovanni La Mura, Ulisses Barres de Almeida and Francesco Longo
    • EPJ Web of Conferences 280, 01007 (2023), EPJ Web Conf. Volume 280, 2023, RICAP-22, 8th Roma International Conference on Astroparticle Physics
    • DOI: 10.1051/epjconf/202328001007
  5. Study of the 12C+16O fusion reaction in carbon burning via the Trojan Horse Method
    • A. A. Oliva, A. Tumino, N. Soic, et al.
    • EPJ Web of Conferences 279, 11015 (2023)
    • DOI: 10.1051/epjconf/202327911015
  6. Coulomb dissociation of 16O into 4He and 12C
    • L. T. Bott, K. Goebel, M. Heil, et al.
    • EPJ Web of Conferences 279, 04003 (2023)
    • DOI: 10.1051/epjconf/202327904003
  7. Monitoring of Solar Energetic Particles and Cosmic Rays with the RADEM instrument onboard the ESA JUICE mission
    • Patricia Gonçalves, Wojtek Hajdas, Marco Pinto, Andre Galli, and Olivier Witasse
    • EGU General Assembly 2023 Vienna, Austria, 24–28 Apr 2023, EGU23-14711
    • DOI: 10.5194/egusphere-egu23-14711
  8. Signature of Accidental Symmetry Breaking in Two-particle Correlations within the CGC
    • Anderson Kendi Kohara, Cyrille Marquet, Victor Vila
    • Acta Phys.Polon.Supp. 16 (2023) 5, 25
    • DOI: 10.5506/APhysPolBSupp.16.5-A25
  9. Experimental study of high-energy fission and quasi-fission dynamics with fusion-induced fission reactions at VAMOS++
    • D. Fernández, M. Caamaño, D. Ramos, et al.
    • EPJ Web of Conferences 284, 04009 (2023)
    • DOI: 10.1051/epjconf/202328404009
  10. Higgs Physics at a Muon Collider with detailed detector simulation
    • G. Da Molin et al.
    • PoS ICHEP2022 (2022) 515
    • https://pos.sissa.it/414/515
  11. Resistive plate chambers for precise measurement of high-momentum protons in short range correlations at R3B
    • M. Xarepe, T. Aumann, A. Blanco, et al.
    • Nucl. Instr. and Methods A 1055, 168445 (2023)
    • DOI: 10.1016/j.nima.2023.168445
  12. LOOKING FORWARD: PHOTON-INDUCED PROCESSES WITH TAGGED PROTONS AT THE CMS EXPERIMENT
    • Michele Gallinaro
    • Acta Phys. Pol. B-Proc. Suppl. 16 (2023) 5-A12
    • DOI: 10.5506/APhysPolBSupp.16.5-A12
  13. Comprehensive investigation of fission yields by using spallation- and (p,2p)induced fission reactions in inverse kinematics
    • J.L. Rodríguez Sánchez, A. Graña-González, J. Benlliure, et al.
    • EPJ WEB CONF 284 (2023) 04020
    • DOI: 10.1051/epjconf/202328404020
  14. Sibyll "star" : ad-hoc modifications for an improved description of muon data in extensive air showers
    • Felix Riehn, Ralph Engel, Anatoli Fedynitch
    • PoS ICRC2023 (2023) 429 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
    • DOI: 10.22323/1.444.0429
  15. Gamma/hadron discrimination at PeV energies through the azimuthal fluctuations of air shower footprint at the ground
    • A. Bakalová, R. Conceição, L. Gibilisco, V. Novotný, M. Pimenta, B. Tomé, J. Vícha
    • PoS ICRC2023 (2023) 964, Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
    • DOI: 10.22323/1.444.0964
  16. The muon measurements of Haverah Park and their connection to the muon puzzle
    • L. Cazon, H.P. Dembinski, G. Parente, F. Riehn, A.A. Watson
    • PoS ICRC2023 (2023) 431 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
    • DOI: 10.22323/1.444.0431
  17. Study of b- and c-jets identification for Higgs coupling measurements at the Muon Collider
    • G. Da Molin
    • Nuovo Cim. C-Colloq. Commun. Phys. 46 (2023) 92
    • DOI: 10.1393/ncc/i2023-23092-y
  18. Accessing the forward region of the energy spectrum of leading neutral pions in ultra-high energy proton-air interactions
    • M.A. Martins, L. Cazon, R. Conceição and F. Riehn
    • PoS ICRC2023 (2023) 448 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
    • DOI: 10.22323/1.444.0448
  19. A novel method to search for point sources of ultra-high energy neutral particles using spacetime information
    • M.A. Martins, L. Cazon,, R. Conceição,, J. Alvarez-Muñiz, and E. Zas
    • PoS ICRC2023 (2023) 451 - Proceedings of the 38th International Cosmic Ray Conference (ICRC2023)
    • DOI: 10.22323/1.444.0451
  20. The Mercedes water-Cherenkov detector: a multi-PMT shallow tank design proposal for ground-based gamma-ray observatories
    • Ulisses Barres de Almeida, Pedro Assis, Pedro Brogueira, Ruben Conceição, Luis M. Domingues Mendes, Guilherme F. Franco, Lucio Gibilisco, Borja S. González, Luis F. Mendes, Mario Pimenta, Gizele L.P. Santos and Bernardo Tomé for the SWGO collaboration
    • Proceedings of the 38th International Cosmic Ray Conference, PoS ICRC2023 (2023) 601
    • DOI: 10.22323/1.444.0601
  21. Muon tomography with Resistive Plate Chambers for geological characterization
    • R. Sarmento et al.
    • Nuclear Inst. and Methods in Physics Research, A 1060 (2024) 169031
    • DOI: 10.1016/j.nima.2023.169031

Posters (internation meetings)

  1. MOUTINHO CABRAL, I., MISSIONÁRIO, M., NUNES, M., MENDONÇA, V., FERNANDES, J., TRAVESSO, M., VINAGRE, C., MADEIRA, D., GROSSO, A.R., COSTA, P.M. & MADEIRA, C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023, Gold Coast (Austrália), Junho de 2023.
  2. MADEIRA, C., MISSIONÁRIO, M., ALMEIDA, C., MOUTINHO CABRAL, I., NUNES, M., FERNANDES, J.F., TRAVESSO, M., ANTÓNIO, C., RODRIGUES, A.M., MENDONÇA, V., VINAGRE, C., GROSSO, A.R., COSTA, P.M., MADEIRA, D. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
  3. GONÇALVES C, MOUTINHO CABRAL I, RODRIGO AP, MADEIRA C, ALVES DE MATOS AP, GROSSO AR & COSTA PM (2023) Uncovering the potential of Cephalopoda and Polychaeta toxins for drug discovery. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte.
  4. Alpha-synuclein Structural Dynamics from Molecular Dynamics Simulations” at the BioISI Ciências Research and Innovation Week 2023;
  5. “Wild Type and Mutated α-synucleins’ Structure from Coarse-Grained Molecular Dynamics Simulations” at the 2023 Coimbra 3D-Bioinfo-PT;
  6. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vitor. "ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data". Applied Bioinformatics & Public Health Microbiology 2023
  7. Dourado Santos J, Sobral D, Pinheiro M, Isidro J, Bogaardt C, Pinto M, Prada JM, Horton DL, Gomes JP, TELEVIR Consortium, Borges V, INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.Applied Bioinformatics & Public Health Microbiology 2023
  8. Sofia L. Mendes, Carla Sousa Santos, Philine G. D. Feulner, Vitor C. Sousa Multiple outcomes of hybridization in Iberian chubs inferred from whole genome data, 23-27 July 2023, Ferrara, Italy
  9. M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  10. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
  11. Iana Lychko Conference Poster Optimized production of reflectins and characterization of their reversible self-assembly 2023-12-09 PROTEIOS Microbiotec 2023, 7th-9th December 2023, Covilhã, Portugal
  12. Arménio Barbosa Meeting Poster Modeling studies of reflectin de novo peptide assembly 2023-04-05 5th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 4-5th April, 2023, Portugal
  13. Madeira C, Missionário M, Almeida C, Cabral IM, et al. (2023) Molecular and phenotypic plasticity of temperate gobies in response to ocean warming and marine heatwaves. Ciência 2023 - Encontro com a Ciência e Tecnologia em Portugal: Ciência e Oceano para Além do Horizonte, 5th-7th july, Aveiro, Portugal
  14. Cabral IM, Missionário M, Nunes M, […], Madeira C. (2023) How ocean warming is modulating marine host-parasite dynamics in the Anthropocene: Evidence for higher parasite incidence and effects in non-warm adapted intertidal fish population. EcoSummit 2023 - Building a sustainanble and desirable future: adapting to a changing land and seascape. 13th-17th june, Gold Coast, Australia
    • M. Furtado, I. Custódio, T. Pinheiro, R.C. da Silva, L.C. Alves, V. Corregidor, Artificial Neural Networks for high-resolution 3D imaging, ICNMTA 2022 Conference, September 11-16 (2022)
  16. V. Corregidor, L.C. Alves, T. Pinheiro, R.C. da Silva, M. Furtado, Artificial Neural Networks and Ion Beams for 3D Imaging, International Conference on Accelerators for Research and Sustainable Development, IAEA, May 23-27 (2022)
  17. 2nd Annual Meeting of CIBIT: "Deciphering emotions in the human brain - a functional MRI exploration of music-induced emotions and their potential applications"; Alexandre Sayal, Inês Bernardino, Teresa Sousa, Miguel Castelo-Branco, Bruno Direito (2023)
  18. Luís Mendes, Gas Regeneration System for RPCs, LISHEP2023, UERJ, Rio de Janeiro, Brasil 2023-03-06
  19. Nuno Leonardo, New Era in Neutrino Physics at Colliders: construction and physics of SND@LHC experiment, LISHEP 2023, Rio de Janeiro, 2023-03-07
  20. Ricardo Silva, Improving opacity predictions through optimization of atomic data calculations, Atomic Processes in Plasmas (APIP) 2023, Vienna, Austria, 2023-05-16
  21. Ricardo Barrué, The ATLAS Trigger System, 11th Large Hadron Collider Physics Conference 2023, Belgrade, Serbia, 2023-05-23
  22. Nuno Fernandes, ATLAS Trigger and Data Acquisition Upgrades for the High-Luminosity LHC, 11th Large Hadron Collider Physics Conference 2023, Belgrade, Serbia, 2023-05-23
  23. Joana Antunes, Impact of Physical Parameters on GBM Survival Curves in Enhanced Radiotherapy with Gold Nanoparticles, 61th Annual Particle Therapy C0-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
  24. Maria Giorgi, Proton minibem radiation therapy for cardiac radioablation: A proof of concept, 61th Annual Particle Therapy Co-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
  25. Miguel Molina-Hernández, Radiolysis modeling of FLASH during a continuous beam irradiation, 61th Annual Particle Therapy C0-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
  26. Joana Leitão, Proton Multi-Beam FLASH Radiotherapy: Combining FLAH and IMPT Applied to Meningioma Case, 61th Annual Particle Therapy Co-Operative Group conference (PTCOG 61), Madrid, Spain, 2023-06-15
  27. Ricardo Silva, An Atomic Data Optimization Method For Improved Kilonova Opacity Modeling, International Colloquium On Atomic Spectra And Oscillator Strengths For Astrophysical And Laboratory Plasmas (ASOS14), Paris, France, 2023-07-10
  28. Joana Gonçalves-Sá, Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting, NetSci2023: International School and Conference on Network Science, Vienna, Austria, 2023-07-12
  29. Pedro Canatário Duarte, The diffusion of information in social media – How complex is it?, NetSci2023: International School and Conference on Network Science, Vienna, Austria, 2023-07-14
  30. Ana Luísa Carvalho, The ATLAS trigger system during Run 3, Lepton Photon Conference, Melbourne, Australia, 2023-07-17
  31. Felix Riehn, The muon measurements of Haverah Park and their connection to the muon puzzle, 38th International Cosmic Ray Conference (ICRC2023) - The Astroparticle Physics Conference, Nagoya, Japan and Online, 2023-07-27
  32. André Torcato, Heavy baryon spectroscopy in a quark-diquark approach, 25th European conference on few-body problems in physics (EFB25), Mainz, Germany, 2023-07-30
  33. Miguel Martins, Accessing the forward region of the energy spectrum of leading neutral pions in ultra-high energy proton-air interactions, The Astroparticle Physics Conference, ICRC 2023, Nagoya, Japan and Online, 2023-08-01
  34. Miguel Martins, A novel method to search for point sources of ultra-high energy neutral particles using spacetime information, The Astroparticle Physics Conference, ICRC 2023, Nagoya, Japan and Online, 2023-08-03
  35. Maura Teixeira, ATLAS Forward Proton Detector as a Tool for New Physics Searches, poster presentation at European School of High Energy Physics,Grenaa, Denmark 2023-09-11
  36. Patrícia Gonçalves, The Radiation Monitor onboard JUICE, Science opportunities during cruise Heliophysics in Europe, ESTEC, ESA, Noordwijk, The Netherlands, 2023-11-01
  37. BRAVER challenges students in radiation protection training in an international training, Higher Education with Impact Conference, Hasselt, Belgium, 2023-12-13
  38. CHERNE, an adaptative network focused on students, Higher Education with Impact Conference, Hasselt, Belgium, 2023-12-15

Posters (national meetings)

  1. Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “In silico study of cationic peptide dendrimers as pH-dependent vectors for siRNA”, 3D-BIOINFO-PT Annual Meeting, Coimbra, Portugal, Dez. 2023. (Poster)
  2. Rodrigues, F.E.P., Darbre, T., Machuqueiro, M.: “Investigating the pH-Dependent Structure of Cationic Peptide Dendrimers and Their Potential as siRNA Vectors: An In-Silico Study”, 3rd Chem & Biochem Students Meeting, FCUL, Lisboa, Portugal, July 13, 2023. (Poster)
  3. Ricardo Silva, Improved Opacity Predictions of r-process Elements, Jornadas Doutorais do Departamento de Física 2023 Lisboa, Faculdade de Ciênica da Faculdade de Lisboa, 2023-03-30
  4. Tomás Correia Sousa, CALIFA calibration with cosmic muons, Doctoral Congress of Engineering 2023, Faculdade de Engenharia da Universidade do Porto, 2023-06-16

Thesis / Dissertation

PhD Thesis

Finished

  1. Dr. Gonçalo Teixeira, “Olfaction inspired sensing using tailor-made proteins” , MIT Portugal Program of Bioengineering Systems, FCT NOVA, December 2023.
  2. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.
  3. Rational development of new biocatalysts for the production of Parkinson Disease drugs Student: Juliana Rocha Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: July 25 2023
  4. IST Miguel Orcinha Study of solar modulation effects on cosmic ray fluxes measured by the AMS experiment
  5. ATLAS, Pheno UC Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment
  6. UC Alexandre Fonseca Trindade Study of noble gases mixtures characteristics as a detection medium
  7. DarkMatter UC Guilherme Pereira Data processing and Human Machine Interface for the monitoring and control system of LZ dark matter experiment
  8. FCUL Elisabet Galiana Analysis and simulation of (p,g) and PIGE low energy reactions: An ENSARRoot developmen
  9. IST Diogo de Bastos Search for the supersymmetric stop quark in the CMS experiment
  10. FCUL Dalila Mateus Estudos dosimétricos para SBRT/SRT de pequenas lesões do Cérebro
  11. IST Ana Luísa Carvalho Study of the CP properties of the Higgs coupling to top quarks with ATLAS at the LHC.

Ongoing

  1. Jorge Filipe Marques Gadelho
    • Título: Hydrodynamic Analysis of Oscillating Water Column Wave Energy Converters using OpenFOAM
    • Universidade: Instituto Superior Técnico - Universidade de Lisboa Cabral, C. (ongoing). Assessment of impacts of marine non-indigenous species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  2. Carvalho, F. (ongoing). Changes in Ecosystem Services with the introduction of marine invasive species. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  3. Afonso, I. (ongoing). Fouling marine non indigenous species at different biogeographical levels. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  4. Goulding, T. (ongoing). The Portuguese clam fishery: Future impact of Hybrids and Ocean Acidification to coastal communities. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  5. Pereira, E. (ongoing). Dinâmica da migração catádroma do muge (Liza ramada Risso, 1827) e sua importância para os ecossistemas fluviais. Doutoramento em Biologia, Universidade de Évora
  6. Belo, A.F. (ongoing). Contribuição para o conhecimento da biologia e ecologia do sável em Portugal: impacto do restauro fluvial e da gestão participada na sua conservação. Doutoramento em Biologia, Universidade de Évora.
  7. Silva, A.F. (ongoing). Avaliação da adequabilidade do desenho e dimensionamento de uma Área Marinha Protegida com vista à gestão de recursos pesqueiros. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  8. Monteiro, R. (ongoing). Assessment of anthropogenic impacts on the European Eel in Portugal. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa
  9. Marques, J.P. (ongoing). Migrações da corvina-legítima: importância do estuário do Tejo como área de viveiro e de reprodução. Doutoramento em Ciências do Mar, da Faculdade de Ciências, Universidade de Lisboa.
  10. Silva, S. (ongoing). Estudo das populações de truta (Salmo trutta L.) no limite sul de distribuição: implicações para a sua gestão e conservação. Doutoramento em Biologia, Universidade de Évora.
  11. Rato, A. (ongoing). Gestão e conservação das espécies potamódromas: dinâmica de movimentos, fidelidade espacial e migrações parciais. Doutoramento em Biologia, Universidade de Évora.
  12. Almeida, A.R. (ongoing). FRESHseaBASS - Divergent sea bass freshwater incursions. Doutoramento em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa. 1. Pedro R. Figueiredo. ‘Enzymatic Synthesis of Biodegradable Amphiphilic Polymer-drugs for Cancer Treatment.’
  13. Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex Student: André Pina Programa Doutoral em Biomedicina (PhD) Universidade do Porto Faculdade de Medicina, Portugal 2018 – 2023 Defense: January15th 2024 1. Development of biocidal formulations for effective biofouling control Student: Susana Maria da Fonseca Fernandes (Supervisor Principal: Manuel Simões; Outros Supervisores: Fernanda Borges) Programa Doutoral em Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal 2019 – 2023 Defense: Feb9th 2024
  14. Ana Sofia Carvalho, FCT (PD/BD/135550/2018) Immune profiling of advanced-stage HER2+ breast cancer by scRNA-seq.
  15. Matthew Cox Physics - University of Liverpool
  16. Matteo Pisano IST
  17. Ricardo Barrué IST
  18. Duarte Guerreiro FCUL Doutoramento em Engenharia Física
  19. Sara Mesquita UNL- NOVA
  20. José Patuleia Venâncio IST DEFT
  21. Borja González IST
  22. Maura Teixeira UMinho
  23. Joana Antunes FCUL Doutoramento em Engenharia Biomédica e B...
  24. Beatriz Pinheiro Pereira IST PhD in Physics
  25. Miguel Molina-Hernández IST
  26. Raúl Torres IST
  27. Luis Coelho UC
  28. João Martins da Silva IST
  29. João Arruda Gonçalves IST Doctoral Programme in Physics
  30. Manuel Xarepe FCUL PhD. Engineering Physics
  31. Rudnei Machado IST
  32. João Saraiva UC
  33. Mariana Brás IST
  34. Lucio Gibilisco IST
  35. Afonso Paixão Marques UC Engineering Physics
  36. Carina Coelho FCUL
  37. Joana Leitão IST
  38. Luís Afonso UP
  39. Esteban Chalbaud UC Doutoramento em Física
  40. André Cordeiro IST
  41. Nuno Fernandes IST Engineering Physics
  42. Alexandra Fernandes UMinho
  43. Guilherme Soares IST Doutoramento em Engenharia Fisica Tecnol...
  44. Pedro Costa IST
  45. Cristiana Rodrigues FCUL PhD in Biomedical and Biophysics Enginee...
  46. Fernando Souza UMinho
  47. Johan Wulff IST
  48. Giacomo Da Molin IST
  49. Dario Vaccaro IST
  50. André Torcato IST
  51. Ricardo Silva FCUL
  52. Wallison Campanelli FCUL
  53. Eduardo Ferreira UniGraz
  54. Íris Damião IST
  55. Giovanni Marozzo IST
  56. Francisco Barba FCUL
  57. Sandro Saltão UC Doutoramento em Física
  58. Nuno Olavo IST Doutoramento Física
  59. Henrique Legoinha IST
  60. Kai Jenkins UC
  61. Annalisa Berti UMinho
  62. Cristiana Francisco UC
  63. Beymar Surco UC
  64. António Pessanha Gomes IST Doutoramento em Engenharia Física Tecnol...
  65. Caroline Licour UBI
  66. Rodrigo Capucha FCUL
  67. Rui Fernandez IST
  68. Francisca Afonso FCUL
  69. Pedro Conceição UBI Engenharia Aeronaútica
  70. Geraldo Rodrigues IST Mechanical Engineer
  71. Joel Filho UC Engenharia Física
  72. Daniel Vareta IST Mechanical Engineer

Master Thesis

Finished

  1. João Pedro Correia Mourão Miranda (2023) Simulação Numérica de Ventilação Instacionária em Espaços Interiores, ISEP.
  2. RODRIGO DE JESUS EUSÉBIO "Re-implementation of a data analysis pipeline for the genetic characterization of viral pathogens in the context of laboratory surveillance of viral outbreaks" Sep, 2023 Nova Medical School
  3. Marta Ferreira (2023) Genomics of adaptation to cadmium on a spatially heterogeneous environment. MSc Biologia Evolutiva e do Desenvolvimento. Faculdade de Ciências da Universidade de Lisboa.
    • Mestrado em Bioinformática - Universidade do Minho;
      • Aluna: Catarina Gomes Ferreira;
      • Orientadores: Isabel Duarte (UAlg) e Miguel Rocha (UMinho).
      • MitoProfiles: Cancer mitochondrial profiles in high metabolic rate organs"
  5. Jorge Fernando Pereira Sinval: Beyond the Accuracy of Clinical Reasoning: The Development of a New Instrument. Msc Faculdade de Medicina de Lisboa
  6. Ribeiro, A.R. 2022. Estudo da dinâmica de movimentos e comportamento migratório dos ecótipos anádromo e holobiótico de truta (Salmo trutta L.) no rio Mondego., Mestrado em Ecologia e Gestão Ambiental, Faculdade de Ciências, Universidade de Lisboa.78pp HYPERLINK "http://hdl.handle.net/10451/56922"http://hdl.handle.net/10451/56922
  7. Development of computational approaches for the identification of bioactive molecules present in databases of cyanobacterial compounds for therapeutic approaches in human diseases Student: Renato Soares (Main Supervisor: Dr. João Carneiro, CIIMAR; Other Supervisors: Diogo Pratas, Univ Aveiro) Mestrado: Bioinformatics and Computational Biology Faculdade de Ciências da Universidade do Porto, Portugal Defense: July 24th 2023
  8. Molecular Modelling of Natural Compounds Extracted from Plants as New Insecticide Agents Student: Maria Araújo Mestrado: Biofísica e Bionanosistemas Universidade do Minho, Portugal 2019/2022 Defense: April 23rd 2023
  9. Understanding the Molecular Basis Behind Congenital Disorders of Glycosylation Student: Tiago André Cunha Oliveira Mestrado: Biochemistry of Health Escola Superior de Saúde, Instituto Politécnico do Porto, Portugal 2023 Defense: November22nd 2023
  10. Uminho Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider
  11. FCUL João Afonso Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework. http://hdl.handle.net/10451/56730
  12. UC Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC
  13. UC João Humberto Gomes Deep Learning in QCD Jets
  14. UC Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0?2β decay of Xe-136
  15. FCUL Catarina Pereira Performance of the TileCal High Voltage Upgrade System
  16. FCUL Rui Fernandes Marques Controlo Digital e Nova Electrónica para o Banco de Testes para o Sistema de Alta Tensão dos Fotomultiplicadores do Tilecal
  17. FCTUC António Sampaio Optimization of a device for deep-brain transcranial magnetic stimulation via simulations
  18. FCUL Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT
  19. IST Henrique Legoinha Probing the Quark Gluon Plasma with B0s and B+ Mesons: Cross Sections in pp and Nuclear Modification Factors in PbPb Collisions https://cds.cern.ch/record/2860807/
  20. FCUL Tomás Almeida Design of a phantom for radiobiology studies
  21. Uminho Pedro Chaves Probing Dark Matter with Higgs Bosons and Top Quarks
  22. FCUL Lia Pereira The effects of radiation on amyloids and cells experimentally and modeled using the TOPAS framework http://hdl.handle.net/10451/59369
  23. UBI Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
  24. FCUL João Pedro Pires Deep Neural Netwoers in Experimental Data Analyses
    1. FCUL Tomás Correia Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR http://hdl.handle.net/10451/59068
  26. IST Pedro Canatário Duarte The diffusion of information in social media – How much complexity do we need?
  27. IST Lénea Luís Deciphering jet quenching effects through a quantile ratio
  28. UC Pedro Póvoa Combining HPC and Low-Power Systems for Data-Intensive-Acquisition Sensors in Space Missions
  29. UC Francisco Santos Procura de fugas em redes de água
  30. UC João Parente Development of Machine Learning Tools for the extraction of behavioral and physiological parameters of birds in their natural environment
  31. UC Francisco Casalinho Probing the vaccum with di-Higgs production
  32. UC Jorge Francisco Silva Transmission muon tomography using ultra-low gas consumption RPC technology
  33. UC António Caramelo High Granularity Timing Detector’s Patch Panel Filter Testing
  34. FCTUC Giorgio Canezin A nRPC-4D neutron Detector Concept with Timing and Tridimensional Position Readout Capability
  35. UC António Carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans
  36. UC José Sousa Development of a High-Energy Astrophysics Tracker for the Space Rider Orbital Maiden Flight
  37. IST António Pessanha Gomes Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury
  38. IST Simão Costa Probing quark hadronization with B mesons at the LHC http://cds.cern.ch/record/2883330?ln=en
  39. IST Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
  40. Uminho Magda Duarte Development of high-resolution, three-dimensional muographies
  41. IST Guilherme Rita de Almeida Acceleration of track reconstruction algorithms using GPUs
  42. IST Marco Leitão "QGP effects on Energy Correlators inside jets"
  43. IST Milton Freitas Measurement of the number of muons in high occupancy MARTA stations
  44. FCUL Edgar Sousa Study of dosimetry techniques applied to electron beams with high dose rate
  45. ISEL Maria João Borges Beam tests of a scintillation array detector for high-resolution dosimetry
  46. FCUL Ana Campos Estudo da dispersão de partículas alfa em filmes finos
  47. FCUL Nuno Taborda Construção de um protótipo para o estudo da exalação de radão por materiais de construção
  48. FCUL Fábio do Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro
  49. UC Maria Miguel Interlock electronics for the high Granularity Timing Detector od the ATLAS

Ongoing

  1. 2023-present (main supervisor). David Lohmann – MSc in Computational Biology and Bioinformatics thesis: “Multi-omics approach to unravel phenotypic responses of tropical fish from the Eastern Tropical Pacific to ocean warming and acidification scenarios”. NOVA School of Science and Technology, Portugal
  2. 2023-present (co-supervisor). Raquel Maricato - MSc in Computational Biology and Bioinformatics thesis: “Evolution of the minimal stress proteome in marine fauna: potential for adaptation to climate change”. NOVA School of Science and Technology, Portugal.
  3. 2023-present (co-supervisor). João Lopes – MSc in Computational Biology and Bioinformatics thesis: “Multilayer molecular networks shaping goby fish physiological responses to marine heatwaves in intertidal habitats”. NOVA School of Science and Technology, Portugal.

Patents

Datasets

  1. Martins, C., Carvalho, L.M., Moutinho Cabral, I., Saúde, L., Dreij, K., Costa, P.M. A mechanistic study on the interaction effects between legacy and pollutants of emerging concern: A case study with B[a]P and diclofenac. Accession number GSE232729 (under publication embargo)
  2. Gonçalves, C., Moutinho Cabral, I., Grosso, A.R, Costa, P.M. Transcriptome profiling of the posterior salivary gland of the cuttlefish Sepia officinalis. Accession number GSE251667 (under publication embargo)
  3. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 3,076 Campylobacter jejuni isolates. https://zenodo.org/record/7230105#.Y-ftJi0qJQI.
  4. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,999 Escherichia coli isolates. https://zenodo.org/record/7230102#.Y-fuTi0qJQI.
  5. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, Joao Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective cgMLST profiles of a diverse dataset comprising 1,874 Listeria monocytogenes isolates. https://zenodo.org/record/7230003#.Y-fvCC0qJQI.
  6. Mixão, Verónica; Brendebach, Holger; Pinto, Miguel; Sobral, Daniel; Gomes, João Paulo; Deneke, Carlus; Tausch, Simon; Borges, Vítor. Genome assemblies and respective wg/cgMLST profiles of a diverse dataset comprising 1,434 Salmonella enterica isolates. https://zenodo.org/record/7230091#.Y-fvrC0qJQI
  7. Mixão, Verónica; Pinto, Miguel; Sobral, Daniel; Di Pasquale, Adriano; Gomes, João Paulo; Borges, Vítor. Multiple Sequence Alignment of a diverse dataset with 1788 Mycobacterium tuberculosis isolates. https://zenodo.org/doi/10.5281/zenodo.7772651

Software Cientifico

  1. MitoCarta, depositado no GitHub (https://github.com/MitoProfiles/MitoCarta)
  2. Validation and benchmarking of ReporTree (a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data) https://github.com/insapathogenomics/ReporTree
  3. Development of INSaFLU TELE-VIR platform https://github.com/INSaFLU/INSaFLU
  4. Development of INSaFLU Snakemake https://github.com/INSaFLU/insaflu_snakemake

2022

International articles with referee

  1. Santos, João Xavier, et al. "A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics." Frontiers in Neuroscience 16 (2022). 10.3389/fnins.2022.862315
  2. Magalhães, Rita P., et al. "Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach." Molecular Systems Design & Engineering 7.5 (2022): 434-446. https://doi.org/10.1039/D2ME00009A
  3. Burke, Anthony J., Carla SS Teixeira, and Sergio F. Sousa. "Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product." Asian Journal of Organic Chemistry 11.4 (2022): e202100692. https://doi.org/10.1002/ajoc.202100692
  4. Lapaillerie, Delphine, et al. "Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces." Antimicrobial Agents and Chemotherapy 66.8 (2022): e00083-22. https://doi.org/10.1128/aac.00083-22
  5. Araškov, Jovana B., et al. "Zn (II) complexes with thiazolyl–hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity." CrystEngComm 24.29 (2022): 5194-5214. https://doi.org/10.1039/D2CE00443G
  6. Keller-Costa, Tina, et al. "Evidence for cross-feeding, metabolic specialization, and niche partitioning in the octocoral holobiont." (2022). https://doi.org/10.21203/rs.3.rs-1630933/v1
  7. Nogueira, Paulo Jorge, et al. "Multimorbidity profile of COVID-19 deaths in Portugal during 2020." Journal of clinical medicine 11.7 (2022): 1898. https://doi.org/10.3390/jcm11071898
  8. Silva, Sandra Godinho, et al. "Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere." Marine Drugs 20.7 (2022): 423. https://doi.org/10.3390/md20070423
  9. Fernandes, Henrique S., et al. "A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems." Molecules 27.17 (2022): 5524. https://doi.org/10.3390/molecules27175524
  10. Vieira, Tatiana F., et al. "Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations." Antibiotics 11.2 (2022): 185. https://doi.org/10.3390/antibiotics11020185
  11. Rocha, Juliana F., Sérgio F. Sousa, and Nuno MF Sousa A. Cerqueira. "Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids." ACS Catalysis 12.9 (2022): 4990-4999. https://doi.org/10.1021/acscatal.1c05567
  12. Pereira, Ana Cláudia, et al. "Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells." Molecular Systems Design & Engineering (2022). https://doi.org/10.1039/D2ME00022A
  13. Rodrigues, João Antunes, et al. "Automatic Risk Assessment for an Industrial Asset Using Unsupervised and Supervised Learning." Energies 15.24 (2022): 9387. https://doi.org/10.3390/en15249387
  14. Silva, Sara, et al. "Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface." Molecules 27.9 (2022): 2734. https://doi.org/10.3390/molecules27092734
  15. Pires, Rita Costa, et al. "Transcriptome Analysis in Cork Oak Using Laser Microdissection and RNA-Seq." Biology and Life Sciences Forum. Vol. 11. No. 1. MDPI, 2021. https://doi.org/10.3390/IECPS2021-11914
  16. Vilela, Joana, et al. "Biomedical knowledge graph embeddings for personalized medicine: Predicting disease‐gene associations." Expert Systems (2022): e13181. https://doi.org/10.1111/exsy.13181
  17. Caled, D., Carvalho, P., Silva, M.J. (2022). MINT - Mainstream and Independent News Text Corpus. In: , et al. Computational Processing of the Portuguese Language. PROPOR 2022. Lecture Notes in Computer Science(), vol 13208. Springer, Cham. https://doi.org/10.1007/978-3-030-98305-5_3
  18. Silva, Margarida, et al. "A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast." Molecular Ecology (2022). https://doi.org/10.1111/mec.16428
  19. Vieira, Tatiana F., et al. "Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach." Molecular Systems Design & Engineering 7.10 (2022): 1294-1306. https://doi.org/10.1039/D2ME00088A
  20. Catumba, Guilherme TR, Orlando Oliveira, and Paulo J. Silva. "Another look at the Landau gauge three-gluon vertex." EPJ Web of Conferences. Vol. 258. EDP Sciences, 2022. https://doi.org/10.1051/epjconf/202225802008
  21. Comparison of Different Features and Neural Networks for Predicting Industrial Paper Press Condition; João Antunes Rodrigues, José Torres Farinha, Mateus Mendes, Ricardo J. G. Mateus, António J. Marques Cardoso. https://doi.org/10.3390/en15176308
  22. Antunes Rodrigues J, Torres Farinha J, Mendes M, Mateus R, Marques Cardoso A. Short and long forecast to implement predictive maintenance in a pulp industry. Eksploatacja i Niezawodnosc – Maintenance and Reliability 2022; 24 (1): 33–41 http://dx.doi.org/10.17531/ein.2022.1.5
  23. Isidro, J., Borges, V., Pinto, M. et al. Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nat Med 28, 1569–1572 (2022). https://doi.org/10.1038/s41591-022-01907-y
  24. Adriana M. Saur, Jorge Sinval, Cristina M. Del-Ben, Rosângela F. L. Batista8, Antônio A. M. Da Silva, Marco A. Barbieri1, Heloisa Bettiol1 The Postpartum Bonding Questionnaire: validity evidence from the Brazilian version; Journal of Child and Family Studies (https://doi.org/10.1007/s10826-022-02406-x)
  25. João A.Marques da SilvaaMiguelVieira de CarvalhoabRui P.Cardoso CoelhoabIgor A.Rodrigues LopesabFrancisco M.Andrade Piresab On the representativeness of polycrystalline models with transformation induced plasticity; Finite Elements in Analysis and Design (https://doi.org/10.1016/j.finel.2022.103875)
  26. Aggregation of a Parkinson’s Disease-Related Peptide: When Does Urea Weaken Hydrophobic Interactions? N. Galamba* Cite this: ACS Chem. Neurosci. 2022, 13, 12, 1769–1781 Publication Date:May 26, 2022 (https://doi.org/10.1021/acschemneuro.2c00169)
  27. Gadelho, J., Guedes Soares, C., Barajas, G., & Lara, J. L. (2022). CFD analysis of the PTO damping on the performance of an onshore dual chamber OWC. In C. Guedes Soares & T. A. Santos, Trends in Maritime Technology and Engineering Volume 2 (1st ed., pp. 381–389). CRC Press. https://doi.org/10.1201/9781003320289-40
  28. Gadelho, J., & Guedes Soares, C., (2022). Pneumatic performance improvement of an onshore dual chamber OWC using a CFD model. In Trends in Renewable Energies Offshore (Guedes Soares C., (Ed.)). https://doi.org/10.1201/9781003360773-36
  29. Non-B DNA conformations analysis through molecular dynamics simulations - ScienceDirect André F. Pina, Sérgio F. Sousa, Luísa Azevedo, João Carneiro, Non-B DNA conformations analysis through molecular dynamics simulations, Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 1866, Issue 12, 2022, 130252, ISSN 0304-4165, https://doi.org/10.1016/j.bbagen.2022.130252.
  30. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations (mdpi.com) Boudjouan F, Zeghbib W, Carneiro J, Silva R, Morais J, Vasconcelos V, Lopes G. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations. Agriculture. 2022; 12(11):1755. https://doi.org/10.3390/agriculture12111755
  31. Bendall EE, Bagley R, Linnen CR, Sousa VC (2022) Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31, 2348–2366. https://doi.org/10.1111/mec.16410
  32. João Carvalho, Hernan Morales, Rui Faria, Roger Butlin, Vitor Sousa (2022) Integrating Pool-seq uncertainties into demographic inference. Authorea. December 05, 2022. DOI: 10.22541/au.167023671.11036754/v1
  33. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Insights into the Degradation of Polymer-Drug Conjugates by an Overexpressed Enzyme in Cancer Cells, J. Med. Chem. 2023, doi.org/10.1021/acs.jmedchem.2c01781.
  34. Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek Quinn, Thomas S. Moody, Andreia F. Sousa, Armando J.D. Silvestre, and Alexandra T.P. Carvalho. Org. Process Res. Dev. 2022. doi.org/10.1021/acs.oprd.1c00480.
  35. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022) A drug discovery approach based on comparative transcriptomics between two toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. Mol Omics, 18(8), 731-744. doi: 10.1039/D2MO00138A
  36. RODRIGO, A.P., LOPES, A., PEREIRA, R., ANJO, S.I., MANADAS, B., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2022) Endogenous Fluorescent Proteins in the Mucus of an Intertidal Polychaeta: Clues for Biotechnology. Mar Drugs, 20(4), 224. doi: 10.3390/md20040224
  37. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Echium plantagineum L. (Boraginaceae), the first chloroplast genome belonging to the Echium genus. Mitochondrial DNA Part B, 7(6), 1154–1156. https://doi.org/10.1080/23802359.2022.2087559
  38. Carvalho Leonardo, I., Barreto Crespo, M. T., Capelo, J., & Bustos Gaspar, F. (2022). The complete plastome of Nonea vesicaria (L.) Rchb. (Boraginaceae), the first chloroplast genome belonging to the Nonea genus. Mitochondrial DNA Part B, 7(7), 1302–1304. https://doi.org/10.1080/23802359.2022.2095233
  39. Leonardo, I. C., Barreto Crespo, M. T., & Gaspar, F. B. (2022). Unveiling the complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a taint-producing strain. G3 Genes|Genomes|Genetics, jkac225. https://doi.org/10.1093/g3journal/jkac225
  40. Non-B DNA conformations analysis through molecular dynamics simulations Pina A.F., Sousa S.F., Azevedo L., and Carneiro J.Biochimica et Biophysica Acta - General Subjects 1866 (12) (2022) Article | DOI: 10.1016/j.bbagen.2022.130252
  41. Liposomal Formulations Loaded with a Eugenol Derivative for Application as Insecticides: Encapsulation Studies and In Silico Identification of Protein Targets Fernandes M.J.G., Pereira R.B., Rodrigues A.R.O., Vieira T.F., Fortes A.G., Pereira D.M., Sousa S.F., Goncalves M.S.T., and Castanheira E.M.S. Nanomaterials 12 (20) (2022) Article | DOI: 10.3390/nano12203583
  42. A Molecular Mechanics Energy Partitioning Software for Biomolecular Systems Fernandes H.S., Cerqueira N.M.F.S.A., Sousa S.F., and Melo A.Molecules 27 (17) (2022) Article | DOI: 10.3390/molecules27175524
  43. Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces Lapaillerie D., Charlier C., Guyonnet-Duperat V., Murigneux E., Fernandes H.S., Martins F.G., Magalhaes R.P., Vieira T.F., Richetta C., Subra F., Lebourgeois S., Charpentier C., Descamps D., Visseaux B., Weigel P., Favereaux A., Beauvineau C., Buron F., Teulade-Fichou M.-P., Routier S., Gallois-Montbrun S., Meertens L., Delelis O., Sousa S.F.,and Parissi V. Antimicrobial Agents and Chemotherapy 66 (8) (2022) Article | DOI: 10.1128/aac.00083-22
  44. Synthesis, computational and nanoencapsulation studies on eugenol-derived insecticides Coelho C.M.M., Pereira R.B., Vieira T.F., Teixeira C.M., Fernandes M.J.G., Rodrigues A.R.O., Pereira D.M., Sousa S.F.,Gil Fortes A., Castanheira E.M.S., and T. Goncalves M.S. New Journal of Chemistry 46 (30) pp.14375-14387 (2022) Article | DOI: 10.1039/d2nj01893d
  45. Targeting Pseudomonas aeruginosa MvfR in the battle against biofilm formation: a multi-level computational approach Vieira T.F., Magalhaes R.P., Cerqueira N.M.F.S.A., Simoes M., and Sousa S.F. Molecular Systems Design and Engineering (2022) Article | DOI: 10.1039/d2me00088a
  46. Study of the anticancer potential of Cd complexes of selenazoyl-hydrazones and their sulfur isosters Markovic S.B., Maciejewska N., Olszewski M., Visnjevac A., Puerta A., Padron J.M., Novakovic I., Kojic S., Fernandes H.S., Sousa S.F., Ramotowska S., Chylewska A., Makowski M., Todorovic T.R., and Filipovic N.R. European Journal of Medicinal Chemistry 238 (2022) Article | DOI: 10.1016/j.ejmech.2022.114449
  47. New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes H.S., Sousa S.F., and Cerqueira N.M.F.S.A. Molecular Diversity 26 (3) pp.1373-1381 (2022) Article | DOI: 10.1007/s11030-021-10259-7
  48. Computational Studies Devoted to the Catalytic Mechanism of Threonine Aldolase, a Critical Enzyme in the Pharmaceutical Industry to Synthesize β-Hydroxy-α-amino Acids Rocha J.F., Sousa S.F., and Cerqueira N.M.F.S.A. ACS Catalysis 12 (9) pp.4990-4999 (2022) Article | DOI: 10.1021/acscatal.1c05567
  49. The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina A.F., Sousa S.F., and Cerqueira N.M.F.S.A. ChemBioChem 23 (9) (2022) (IF 3.461, Q1)Article | DOI: 10.1002/cbic.202100555
  50. Development of Neuropeptide Y and Cell-Penetrating Peptide MAP Adsorbed onto Lipid Nanoparticle Surface Silva S., Marto J., Goncalves L.M., Fernandes H.S., Sousa S.F., Almeida A.J., and Vale N. Molecules 27 (9) (2022) Article | DOI: 10.3390/molecules27092734
  51. The critical role of Asp206 stabilizing residues on the catalytic mechanism of the Ideonella sakaiensis PETase Magalhaes R.P., Fernandes H.S., and Sousa S.F. Catalysis Science and Technology 12 (11) pp.3474-3483 (2022) Article | DOI: 10.1039/d1cy02271g
  52. Transformation of a Chiral Glycolic Acid to an Isoaurone: Stereochemical Assignment of a Benzilic Acid Rearrangment Product Burke A.J., Teixeira C.S.S., and Sousa S.F.Asian Journal of Organic Chemistry 11 (4) (2022) Article | DOI: 10.1002/ajoc.202100692
  53. Identification of novel aptamers targeting cathepsin B-overexpressing prostate cancer cells Pereira A.C., Pina A.F., Sousa D., Ferreira D., Santos-Pereira C., Rodrigues J.L., Melo L.D.R., Sales G., Sousa S.F., and Rodrigues L.R. Molecular Systems Design and Engineering 7 (6) pp.637-650 (2022) Article | DOI: 10.1039/d2me00022a
  54. Identification of novel candidates for inhibition of LasR, a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa, through a specialized multi-level in silico approach Magalhaes R.P., Vieira T.F., Melo A., and Sousa S.F. Molecular Systems Design and Engineering 7 (5) pp.434-446 (2022) Article | DOI: 10.1039/d2me00009a
  55. Drug Repurposing Targeting Pseudomonas aeruginosa MvfR Using Docking, Virtual Screening, Molecular Dynamics, and Free-Energy Calculations Vieira T.F., Magalhaes R.P., Simoes M., and Sousa S.F. Antibiotics 11 (2) (2022) (IF 5.22) Article | DOI: 10.3390/antibiotics11020185
  56. Zn(II) complexes with thiazolyl-hydrazones: structure, intermolecular interactions, photophysical properties, computational study and anticancer activity Araskov J.B., Visnjevac A., Popovic J., Blagojevic V., Fernandes H.S., Sousa S.F., Novakovic I., Padron J.M., Hollo B.B., Monge M., Rodriguez-Castillo M., Lopez-De-Luzuriaga J.M., Filipovic N.R., and Todorovic T.R. CrystEngComm (2022) Article | DOI: 10.1039/d2ce00443g
  57. Biguino, B., Olmedo, E., Ferreira, A., Zacarias, N., Lamas, L., Favareto, L., Palma, C., Borges, C., Teles-Machado, A., Dias, J., Castellanos, P. & Brito, A.C. 2022. Evaluation of SMOS L4 Sea Surface Salinity product in the Western Iberian Coast. Remote Sensing, 14. 423. https://www.mdpi.com/2072-4292/14/2/423
  58. Cereja, R., Brotas, V., Nunes, S., Rodrigues, M., Cruz, J.P. & Brito, A.C. 2022. Tidal influence on water quality indicators in a temperate mesotidal estuary (Tagus estuary, Portugal). Ecological Indicators, 136. 108715. https://www.sciencedirect.com/science/article/pii/S1470160X22001868
  59. Santos, C., Cabral, S., Carvalho, F., Sousa, P., Goulding, T., Ramajal, J.  Silva, G.,  Brito, A.C., Costa, J.L. & Chainho, P. 2022. Spatial and temporal variations of cockle (Cerastoderma spp.) populations in two Portuguese estuarine systems with low directed fishing pressure. Frontiers in Marine Science 9. 699622. https://www.frontiersin.org/articles/10.3389/fmars.2022.699622/full
  60. Silva, A.F., Costa, B.H..; Costa, J.L., Pereira, E., Marques, J.P., Castro, J.J., Lino, P.G., Candeias-Mendes, A., Pousão-Ferreira, P., Sousa, I., Bentes L., Gonçalves, J.M.S., Almeida, P.R. & Quintella, B.R. 2022. Movements of Hatchery-Reared Dusky Groupers Released in a Northeast Atlantic Coastal Marine Protected Area. Journal of Marine Sciences and Engineering, 94. 10. https://www.mdpi.com/2077-1312/10/7/904
  61. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  62. A parametric approach for the identification of single-charged isotopes with AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1031 (2022) 166564 10.1016/j.nima.2022.166564
  63. Iterative-Bayesian unfolding of cosmic-ray isotope fluxes measured by AMS-02 E. Bueno, F. Barão, M. Vecchi NIMA A 1046 (2023) 167695 10.1016/j.nima.2022.167695
  64. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  65. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  66. Measurement of Higgs boson decay into b-quarks in associated production with a top-quark pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration (2917 authors) J. High Energy Phys. 6 (2022) 097 10.1007/JHEP06(2022)097
  67. The Muon Puzzle in cosmic-ray induced air showers and its connection to the Large Hadron Collider Johannes Albrecht, Lorenzo Cazon, Hans Dembinski, Anatoli Fedynitch, Karl-Heinz Kampert, Tanguy Pierog, Wolfgang Rhode, Dennis Soldin, Bernhard Spaan, Ralf Ulrich, Michael Unger Astrophys. Space Sci. 367 (2022) 27 10.1007/s10509-022-04054-5
  68. Arrival Directions of Cosmic Rays above 32 EeV from Phase One of the Pierre Auger Observatory Pierre Auger Collaboration (373 authors) Astrophys. J. 935 (2022) 170 10.3847/1538-4357/ac7d4e
  69. A Catalog of the Highest-Energy Cosmic Rays recorded during Phase I of Operation of the Pierre Auger Observatory The Pierre Auger Collaboration Astrophysical Journal Supplement 264 (2023) 2, 50
  70. Search for nonresonant Higgs boson pair production in final state with two bottom quarks and two tau leptons in proton-proton collisions at 13 TeV CMS Collaboration arXiv.2206.09401 https://doi.org/10.48550/arXiv.2206.09401
  71. Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. Rev.Phys. 8 (2022) 100071
  72. Observation of Bs0 mesons and measurement of the Bs0/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration (2328 authors) Phys. Lett. B 829 (2022) 137062 10.1016/j.physletb.2022.137062
  73. A portrait of the Higgs boson by the CMS experiment ten years after the discovery CMS collaboration Nature 607 (2022) 7917, 60-68 10.1038/s41586-022-04892-x
  74. Search for high-mass exclusive gammagamma-> WW and gammagamma-> ZZ production in proton-proton collisions at sqrt(s) = 13 TeV CMS and TOTEM Collaborations arXiv:2211.16320
  75. Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer CMS and TOTEM Collaborations arXiv:2210.0585
  76. A machine learning-based methodology for pulse classification in dual-phase xenon time projection chambers P. Bras, F. Neves, A. Lindote, A. Cottle, R. Cabrita, E. Lopez Asamar, G. Pereira, C. Silva, V. Solovov, M.I. Lopes Eur. Phys. J. C 82 (2022) 553 10.1140/epjc/s10052-022-10502-x
  77. Radiation as a Tool against Neurodegeneration-A Potential Treatment for Amyloidosis in the Central Nervous System Coelho CM, Pereira L, Teubig P, Santos P, Mendes F, Viñals S, Galaviz D, Herrera F 10.3390/ijms232012265
  78. Determination of Ionizing Threshold of Trimethylamine Ions with a High Resolution RGA Mass Spectrometer A.M.F. Trindade, J. Escada, M. Rajado Silva, F.I.G.M. Borges, F.P. Santos 10.1088/1748-0221/17/02/P02031
  79. Dual-Polarity Ion Drift Chamber: A new system to measure the mobility of positive and negative ions D.J.G. Marques, A.F.V. Cortez, M.A.G. Santos, F.P. Santos, A.P. Marques, J. Escada, C.A.N. Conde, F.I.G.M. Borges NIMA 1029 (2022) 166416 10.1016/j.nima.2022.166416
  80. Dual-Polarity Ion Drift Chamber: Experimental results with Xe–S mixtures A. Marques, D. Marques, N. Duarte, J. Teles, A. Cortez, A. Trindade, J. Escada, F. Santos, F. Borges Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167575 https://doi.org/10.1016/j.nima.2022.167575
  81. A new experimental system for electron transverse diffusion measurements A. Trindade, J. Escada, J. Maia, R. Curado da Silva, F. Borges, A. Marques, F. Santos Nucl. Inst. Met. A, Volume 1045, 1 January 2023, 167603 https://doi.org/10.1016/j.nima.2022.167603
  82. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  83. All-sky Medium Energy Gamma-ray Observatory eXplorer mission concept Regina Caputo, Marco Ajello, Carolyn A. Kierans, Jeremy S. Perkins, Judith L. Racusin, Luca Baldini, Matthew G. Baring, Elisabetta Bissaldi, Eric Burns, Nicholas Cannady, Eric Charles, Rui M. Curado da Silva, Ke Fang, Henrike Fleischhack, Chris Fryer, Yasushi Fukazawa, J. Eric Grove, Dieter Hartmann, Eric J. Howell, Manoj Jadhav, Christopher M. Karwin, Daniel Kocevski, Naoko Kurahashi, Luca Latronico, Tiffany R. Lewis, Richard Leys, Amy Lien, Lea Marcotulli, Israel Martinez-Castellanos, Mario Nicola Mazziotta, Julie McEnery, Jessica Metcalfe, Kohta Murase, Michela Negro, Lucas Parker, Bernard Phlips, Chanda Prescod-Weinstein, Soebur Razzaque, Peter S. Shawhan, Yong Sheng, Tom A. Shutt, Daniel Shy, Clio Sleator, Amanda L. Steinhebel, Nicolas Striebig, Yusuke Suda, Donggeun Tak, Hiro Tajima, Janeth Valverde, Tonia M. Venters, Zorawar Wadiasingh, Richard S. Woolf, Eric A. Wulf, Haocheng Zhang, Andreas Zoglauer Journal of Astronomical Telescopes, Instruments, and Systems, Vol. 8, Issue 4, 044003 (October 2022). https://doi.org/10.1117/1.JATIS.8.4.044003
  84. Upgrade of the ATLAS Tile Calorimeter high voltage system A. Gomes, J. S. Augusto, F. Cuim, G. Evans, R. Fernandez, L. Gurriana, R. Marques, F. Martins, C. Pereira (ATLAS Tile Calorimeter Group) J. Instrum. 17 (2022) C01061 10.1088/1748-0221/17/01/C01061
  85. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  86. Techniques for TPC Calibration: application to liquid Ar-TPCs J. Maneira for the DUNE Collaboration Particles 2022, 5(1), 74-83
  87. Improved search for invisible modes of nucleon decay in water with the SNO+ detector SNO+ Collaboration Phys. Rev. D 105, 112012 (2022) 10.1103/PhysRevD.105.112012
  88. Going to the light front with contour deformations Gernot Eichmann, Eduardo Ferreira, Alfred Stadler (selected for Editor’s Choice) Phys.Rev.D 105 (2022) 3, 034009 https://doi.org/10.1103/PhysRevD.105.034009
  89. Theory introduction to baryon spectroscopy, Gernot Eichmann Few-Body Systems volume 63, Article number: 57 (2022) https://doi.org/10.1007/s00601-022-01756-y
  90. Isotopic cross sections of fragmentation residues produced by light projectiles on carbon near 400A MeV J. M. Boillos, D. Cortina-Gil, J. Benlliure, et al. (R3B collaboration) Phys. Rev. C 105, 014611 (2022) 10.1103/PhysRevC.105.014611
  91. Structure Calculations in Nd III and U III Relevant for Kilonovae Modelling Ricardo F. Silva, Jorge M. Sampaio, Pedro Amaro, Andreas Flörs, Gabriel Martínez-Pinedo, and José P. Marques Atoms2022,10,18 10.3390/atoms10010018
  92. Structure of single KL0–, double KL1–, and triple KL2−ionization in Mg, Al, and Si targets induced by photons, and their absorption spectra Y. Ménesguen, M.-C. Lépy, Y. Ito, M. Yamashita, S. Fukushima, T. Tochio, M. Polasik, K. Slabkowska,L. Syrockif, P. Indelicatog, J. P. Gomilsekh, J. P. Marques, J.M.Sampaio, J. Machado, P. Amaro, M. Guerra, J. P. Santos, and F. Parente Rad. Phys. Chem. 194, 110048 (2022) 10.1016/j.radphyschem.2022.110048
  93. Unveiling the two-proton halo character of 17Ne: Exclusive measurement of quasi-free proton-knockout reactions C. Lehr, F. Wamers, F.Aksouh, et al. Phys. Lett. B 827, 136957 (2022) 10.1016/j.physletb.2022.136957
  94. Experimental and theoretical approaches for determining the K-shell fluorescence yield of carbon Philipp Hönicke, Rainer Unterumsberger, Nils Wauschkuhn, Burkhard Beckhoff, Markus Krämer, Paul Indelicato, Jorge Sampaio, José Pires Marques, Mauro Guerra, Fernando Parente, and José Paulo Santos Rad. Phys. Chem. 202, 110501 (2023) 10.1016/j.radphyschem.2022.110501
  95. L-shell fluorescence yield for heavy elements with 80≤Z≤96 K. Meddouh, S. Daoudi, A. Kahoul, J.M. Sampaio, J.P. Marques, F. Parente, N. Kup Aylikci, V. Aylikci, Y. Kasri, A. Hamidani Rad. Phys. Chem. 202, 110481 (2023) 10.1016/j.radphyschem.2022.110481
  96. K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence Daniel Pinheiro, André Fernandes, César Godinho, Jorge Machado, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, Mauro Guerra Rad. Phys. Chem. 203, 110594 (2023) 10.1016/j.radphyschem.2022.110594
  97. Semi-empirical and empirical calculation of Kβ/Kα intensity ratios for Low-Z Elements A. Hamidani, A. Kahoul, S. Daoudi, J.M. Sampaio, J.P. Marques, F. Parente, K. Meddouh, N. Kup Aylikci, V. Aylikci, Y. Kasri At. Nucl. Data Tables 149, 101549 (2023) 10.1016/j.adt.2022.101549
  98. Independently Optimized Orbital Sets in GRASP – The Case of Hyperfine Structure in Li I Y. Li, P. Jönsson, M. Godefroid, G. Gaigalas, J. Bieron, J. P. Marques, P. Indelicato, and C. Chen Atoms 2023, 11, 4 10.3390/atoms11010004
  99. Design of beam optics for RF-separated kaon and antiproton beams in the M2 beam line of the CERN North Area A. Gerbershagen et al. (14 authors) NIM A 1048 (2023) 168004 https://doi.org/10.1016/j.nima.2022.168004
  100. An experiment for electron-hadron scattering at the LHC K.D. J. André et al Eur.Phys.J.C 82 (2022) 1, 40 10.1140/epjc/s10052-021-09967-z
  101. A template method to measure the t(t)over-bar polarisation J. A. Aguilar-Saavedra, M. C. N. Fiolhais, P. Martin-Ramiro, J. M. Moreno, A. Onofre Eur. Phys. J. C 82 (2022) 134 10.1140/epjc/s10052-022-10063-z
  102. Impact of jet-production data on the next-to-next-to-leading-order determination of HERAPDF2.0 parton distributions H1 Collaboration / ZEUS Collaboration (234 authors) Eur. Phys. J. C 82 (2022) 243 10.1140/epjc/s10052-022-10083-9
  103. Jets and Jet Substructure at Future Colliders Johan Bonilla et al. (27 authors) Front. Physics 10 (2022) 897719 10.3389/fphy.2022.897719
  104. On the conformal spin dependence of the perturbative QCD vacuum singularity G.~Chachamis and A.~Sabio Vera JHEP 07 (2022) 109 https://doi.org/10.1007/JHEP07(2022)109
  105. On the polarization of the non-prompt contribution to inclusive J/psi production in pp collisions Pietro Faccioli, Carlos Lourenco J. High Energy Phys. 10 (2022) 010 10.1007/JHEP10(2022)010
  106. NNLO interpolation grids for jet production at the LHC D. Britzger, A. Gehrmann-De Ridder, T. Gehrmann, E. W. N. Glover, C. Gwenlan, A. Huss, J. Pires, K. Rabbertz, D. Savoiu, M. R. Sutton, J. Stark Eur.Phys.J.C 82 (2022) 10, 930 10.1140/epjc/s10052-022-10880-2
  107. Improved background subtraction and a fresh look at jet sub-structure in JEWEL J. G. Milhano and K. Zapp Eur. Phys. J. C82 (2022) no.11, 1010 10.1140/epjc/s10052-022-10954-1
  108. Multiparticle production in proton-nucleus collisions beyond eikonal accuracy P. Agostini, T. Altinoluk, N. Armesto, F. Dominguez and J. G. Milhano Eur. Phys. J. C82 (2022) no.11, 1001 10.1140/epjc/s10052-022-10962-1
  109. Flavour-Changing Neutral Scalar Interactions of the Top Quark Nuno Castro, Kirill Skovpen Universe 2022, 8, 609 10.3390/universe8110609
  110. Heavy quarks and jets as probes of the QGP Liliana Apolinário, Michael Winn, Yen-Jie Lee Prog.Part.Nucl.Phys. 127 (2022) 103990 10.1016/j.ppnp.2022.103990
  111. Concept of a fast neutron detector based on 10B-RPCs A. Morozov, L.M.S. Margato, A. Blanco and D. Galaviz A. Morozov et al 2022 JINST 17 P02016 10.1088/1748-0221/17/02/P02016
  112. Improving count rate capability of timing RPCs by increasing the detector working temperature A. Blanco et al. NIMA 1045, 2023 10.1016/j.nima.2022.167652
  113. SND@LHC: The Scattering and Neutrino Detector at the LHC SND@LHC Colaboration To be published in JINST (arXiv:2210.02784)
  114. The SHiP experiment at the proposed CERN SPS Beam Dump Facility SHiP Collaboration Eur.Phys.J.C 82 (2022) 5, 486 https://doi.org/10.1140/epjc/s10052-022-10346-5
  115. Search for pair-production of vector-like quarks in pp collision events at s√=13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector N. Castro, T. Vale et al. (ATLAS Collaboration) PLB, arXiv:2210.15413
  116. Fitting a Collider in a Quantum Computer: Tackling the Challenges of Quantum Machine Learning for Big Datasets Miguel Caçador Peixoto, Nuno Filipe Castro, Miguel Crispim Romão, Maria Gabriela Jordão Oliveira, Inês Ochoa arXiv:2211.03233 10.48550/arXiv.2211.03233
  117. A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 DOI: 10.1126/sciadv.abm4234
  118. Validation of dMEREM, the Detailed Mars Energetic Radiation Environment Model, with RAD Data from the Surface of Mars Patricia Goncalves, Luisa Arruda, Marco Pinto Front. Astron. Space Sci. 9 (2022) 833144 10.3389/fspas.2022.833144
  119. Pioneering evaluation of GaN transistors in geostationary satellites Hugo Mostardinha, Diogo Matos, Nuno Borges Carvalho, Jorge Sampaio, Marco Pinto, Patricia Gonçalves, Tiago Sousa, Paul Kurpas, Joachim Wuerfl, Andrew Barnes, François Garat & Christian Poivey Sci Rep 12, 12886 (2022) https://doi.org/10.1038/s41598-022-17179-y
  120. The BepiColombo Environment Radiation Monitor, BERM Marco Pinto, Beatriz Sanchez-Cano, Richard Moissl, Johannes Benkhoff, Carlota Cardoso, Patrícia Gonçalves, Pedro Assis, Rami Vainio, Philipp Oleynik, Arto Lehtolainen, Manuel Grande & Arlindo Marques Space Sci. Rev. 218 (2022) 54 10.1007/s11214-022-00922-2
  121. Tackling the muon identification in water Cherenkov detectors problem for the future Southern Wide-field Gamma-ray Observatory by means of Machine Learning B.S. González, R. Conceição, M. Pimenta, B. Tomé, A. Guillén Neural Computing & Applications 34, pages 5715–5728 (2022) https://doi.org/10.1007/s00521-021-06730-z
  122. P_{\gamma h}^{\alpha} A new variable for γ/h discrimination in large gamma-ray ground arrays R. Conceição, B.S. González, M. Pimenta, B. Tomé Phys.Lett.B 827 (2022) 136969 10.1016/j.physletb.2022.136969
  123. The relation between optical and γ-ray emission in BL Lac sources G La Mura, J Becerra Gonzalez, G Chiaro, S Ciroi, J Otero-Santos Monthly Notices of the Royal Astronomical Society, Volume 515, Issue 4, October 2022, Pages 4810–4827 10.1093/mnras/stac2041
  124. The Mercedes water Cherenkov detector P. Assis, A. Bakalová, U. Barres de Almeida, P. Brogueira, R. Conceição, A. De Angelis, L. Gibilisco, B. S. González, A. Guillén, G. La Mura, L. M. D. Mendes, L. F. Mendes, M. Pimenta, R. C. Shellard, B. Tomé, J. Vícha Eur.Phys.J.C 82 (2022) 10, 899 10.1140/epjc/s10052-022-10857-1
  125. Gamma/hadron discrimination at high energies through the azimuthal fluctuations of the particle distributions at ground R. Conceição, L. Gibilisco, M. Pimenta, B. Tomé JCAP 10 (2022) 086 https://doi.org/10.1088/1475-7516/2022/10/086
  126. Evaluation of the potential of a gamma-ray observatory to detect astrophysical neutrinos through inclined showers Jaime Alvarez-Muñiz, Ruben Conceição, Pedro J. Costa, Mário Pimenta, Bernardo Tomé Phys.Rev.D 106 (2022) 10, 102001 10.1103/PhysRevD.106.102001

Oral Presentations

  1. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Activation of Gemcitabine-Polyester Conjugates in Tumor Tissues. BEB Day 2023 - Science Challenges 2023.
  2. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Xenonucleic acids for advanced therapeutics. Virtual Winter School on Computational Chemistry 2022.
  3. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Catalytic Cycle of the Human Carboxylesterase 2. Virtual Winter School on Computational Chemistry 2022.
  4. Pedro R. Figueiredo, Ricardo D. González, and Alexandra T.P. Carvalho. Hydrolysis of cocaine towards less toxic products: a QM/MM approach. BEB Day 2022 - The overview effect 2022.
  5. Ricardo D. González, Pedro R. Figueiredo, and Alexandra T.P. Carvalho. Principal Component Analysis of the Human Carboxylesterase 2 Active Site Conformations. BEB Day 2022 - The overview effect 2022.
  6. Beatriz C. Almeida, Jennifer Kaczmarek, Kristala L. Jones Prather and Alexandra T. P. Carvalho. Allosteric transcription factor: essential residues. 8th Annual CCPBioSim Conference - Frontiers in Biomolecular Simulation 2022.
  7. COSTA, P.M. (2022). Marine Biotechnology: Applications in Sustainability and Medicine: prospects and tools for bioprospecting. VII Semana da Bioengenharia. Instituto Superior Técnico da Universidade de Lisboa, Lisboa (Portugal), March 2022 (invited speaker).
  8. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology. Dutch Society of Toxicology, Maastricht (Netherlands), September 2022.
  9. RODRIGO, A.P., GONÇALVES, C., MOUTINHO CABRAL, I., MARTINS, C., D'Ambrosio, M., MADEIRA, C., COSTA P.M. (2022). Advances in the bioprospecting for novel bioreactives from marine invertebrates: Multi-omics and computational strategies. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022. (Invited speaker)
  10. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., FERNANDES, J.F., MISSIONÁRIO, M., TRAVESSO, M., GROSSO, A.R., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Goby fish populations in intertidal environments: gene networks and epigenetic regulators modulating energy metabolism in response to seasonal warming and local climate regimes. International Conference for YOUNG Marine Researchers. University of Applied Sciences Bremerhaven, Bremerhaven (Germany), September 2022.
  11. MISSIONÁRIO, M. (2022). Marine shallow waters as climate change hotspots - multi-omics approaches unravel fish response patterns across latitudes, seasons and climate scenarios. UCIBIO BioSeminars. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), December 2022.
  12. Biomolecular Simulations in the Age of Information EUGLOH Research Conference "Global Health Challenges: Advances in E-Health” 2022/11/21 – (University of Lund, Sweden) (online)
  13. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  14. BioSIM - Application of Biomolecular Simulations in the Study of Biofilms Biofilms@UP – A Investigação em Biofilmes na Universidade do Porto 2022/09/15 – (University of Porto, Portugal)
  15. herapy for Genetic Diseases: The Computer as a Tool to Address Genetic Variability VirCo 2022 Meeting “Understanding genetics: a key to a Healthier GENEration” organized by the Portuguese Pharmaceutical Students’ Association (APEF) and by the Croatian Pharmacy and Medical Biochemistry Students Association (CPSA) and that 2022/05/21 (online)
  16. Employing Biomolecular Simulations for a Molecular Understanding of Human Diseases 2nd Workshop “From In Silico to Animal Models for the Study of Human Diseases” 2022/04/20 - University of Aveiro (Portugal)
  17. QM/MM Methods and Protein Ligand Docking: Fundamentals and Applications Ciclo de Seminários, M.Sc. in Computational Biology 2022/04/07 - Invited by Prof. Irina Moreira (Univ Coimbra, Portugal)
  18. Application of QM/MM Methods for Rational Enzyme Engineering of New Biocatalysts: Fighting the Three Demons Les Houches – TSRC Protein Dynamics CECAM Meeting 2022/05/23 – (Aussois, France)
  19. Simulações Computacionais da Descoberta de Fármacos: Conectando a Teoria à Prática IV Simpósio em Bioquímica Aplicada, Organized by the Students of the MSc in Applied Biochemistry, Univ Minho 2022/09/29 – (University of Minho, Portugal)
  20. 2022/10/27 Bioseparation and Materials - Introduction to affinity ligands Pure Winter School 2022 University of Bayreuth (Bayreuth, Germany)

Proceeding in international conferences

  1. Title: Distal edge determination for a multi-slat prompt-gamma camera: Irradiation with a 200-MeV proton beam
    • date: 2022-02-11
    • Authors: H. Simões, A. Morozov, J. Silva, J. Teodoro, P. Crespo
  2. Title: Understanding COVID-19 pandemic trajectories: why changes in online behavior matter for now-casting
    • date: 2022-02-10
    • Authors: Sara Mesquita, Lília Perfeito, João Loureiro and Joana Gonçalves-Sá
    • Conference: NetSciX 2022 - International School and Conference on Network Science Porto, Portugal
  3. Title: Sensitivity to neutrinoless double beta decay of 136Xe with a third generation TPC dark matter experiment
    • date: 2022-06-01
    • Authors: A. Lindote and I. Olcina
    • Conference: Neutrino 2022, Seoul, Korea (virtual)
  4. Title: Neutrino physics with the LUX-ZEPLIN Detector
    • date: 2022-05-31
    • Authors: Paulo Brás (on behalf of LZ Collaboration)
    • Neutrino 2022 Seul,Coreia (virtual)
  5. Title: Deciphering Jet Quenching Effects with Novel Reclustering Tool
    • date: 2022-04-06
    • Authors: Liliana Apolinario, Pablo Rodriguez, Korinna Zapp
    • Conference: Quark Matter 2022 Krakow, Poland (remote)
  6. Title: Timing RPC for thermal neutron detection with 3D position sensitivity
    • date: 2022-09-26
    • Conference: XVI Workshop on Resistive Plate Chambers and Related Detectors CERN, 26–30 Sept 2022
  7. Title: Advances Towards a Large-Area, Ultra-Low-Gas-Consumption RPC Detector
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  8. Title: Improving count rate capability of timing RPCs by increasing the detector working temperature
    • date: 2022-05-22
    • Conference: PM2021 - 15th Pisa Meeting on Advanced Detectors - Edition 2022 May 22-28, 2022, La Biodola - Isola d'Elba (Italy)
  9. Title: Large Field CdTe Monitor for Astrophysics and TGF Science on board the Space Rider
    • date: 2022-11-07
    • Authors: R. M. Curado Da Silva, J. M. Maia, J. Sousa, P. Póvoa, J. Mingacho, G. Falcão, J. Gonçalves, G. Salgado, M. Moita
    • Conference: IEEE Nuclear Science Symposium Milano, Italy
  10. Title: Dual-Polarity Ion Drift Chamber: Experimental results with Xe-SF6 mixtures
    • date: 2022-05-22
    • Authors:
    • Conference: place:
  11. Title: Between even and odd: probing the CP-nature of the Higgs-Top Yukawa coupling date: 2022-07-08
    • conference: International Conference on High Energy Physics (ICHEP 2022) Bologna, Italy
  12. Title: The microevolution of information on social media
    • date: 2022-10-20
    • Authors: Lília Perfeito and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  13. Title: Flu or Not: A computational approach to respiratory-disease surveillance before and after COVID-19
    • date: 2022-10-20
    • Authors: Eleonora Tulumello, Sara Mesquita, Lilia Perfeito, Irma Varela-Lasheras and Joana Gonçalves-Sá
    • Conference: CCS 2022 - Conference on Complex Systems Palma de Maiorca, Spain
  14. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • Conference: EPH - 15th European Public Health Conference 2022 Berlin, Germany
  15. Title: Flu or Not: A computational approach to respiratory-disease before and after COVID-19
    • date: 2022-11-09
    • Authors: Irma Varela-Lasheras, Sara Mesquita, Eleonora Tulumello,Lília Perfeito, and Joana Gonçalves-Sá
    • conference: [3C] Cells, Computers & Clinics Oeiras, Portugal
  16. Title: Proton Multi-Beam FLASH Radiotherapy: Combining FLASH and IMPT
    • date: 2022-11-30
    • Authors: Joana Leitão, João Seco, Patrícia Gonçalves
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  17. Title: Monte Carlo Modeling of Inter-Track Radical Reactions for FLASH
    • date: 2022-11-30
    • Authors: Miguel Molina, Yujie Chi, T. Zhang, Patrícia Gonçalves and João Seco
    • Conference: Flash Radiotherapy and Particle Therapy 2022 Barcelona
  18. Title: Simulation of a multi-slat prompt-gamma camera for proton beam distal edge determination during pelvic irradiation
    • date: 2022-11-05
    • Authors: J. Silva, H. Simões, A. Morozov, J. Teodoro, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italymulti-slat
  19. Title: Simulation of proton range monitoring in an anthropomorphic phantom using a multi-slat prompt-gamma camera
    • date: 2022-11-05
    • Authors: J. Teodoro, H. Simões, A. Morozov, J. Silva, P. Crespo
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Milano, Italy
  20. Title: Positron emission tomography for proton range verification in proton radiation therapy
    • date: 2022-11-05
    • Authors: S.P. Tavernier, R. Bugalho, F. Caramelo, J.P. Cesar, P.Crespo, J.C. Da Silva, L. Ferramacho, N. Ferreira, P. Gonçalves, D.Grosshans, B. Jesus, K.Klein, K. Lang, C. Layden, C. Leong, W. Matava,A. Mozorov, F. Poenisch, M. Proga, N. Sahoo, J. Seco, H. Simões, R.Silva, M. Silveira, J. Varela
    • Conference: IEEE Nucl. Sci. Symp. & Med. Imag. Conf. (NSS/MIC) Nov. 5 - 12, Milano, Italy
  21. Dias, Ana; Moreira, Inês Pimentel; Lychko, Iana; Nurrito, Arianna; Barbosa, A.J.M.; Lutz-Bueno, Viviane; Mezzenga, Raffaele; et al. Corresponding author: Roque, Ana Cecília Afonso. "Hierarchical Self-Assembly of the Reflectin-Derived Protopeptide". Preprint. 2023. http://dx.doi.org/10.2139/ssrn.4406145. 10.2139/ssrn.4406145
  22. Studying mass generation for gluons Gernot Eichmann, Jan M. Pawlowski (selected for Editor's choice) SciPost Phys.Proc. 6 (2022) 018 https://doi.org/10.48550/arXiv.2112.08058

Posters (international meetings)

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2022). Bioprospecting marine environments for unravelling novel drugs: Transcriptomics and interactome-directed analyses of two toxin-secreting Polychaeta. 1st Egas Moniz One Health Symposium.
  2. NUNES, M., MOUTINHO CABRAL, I., GONÇALVES, C., MISSIONÁRIO, M., FERNANDES, J.F., TRAVESSO, M., MADEIRA, D., COSTA P.M., MADEIRA, C. (2022). Transcriptome profiling of the common goby Pomatoschistus microps exposed to seasonal warming reveals gene downregulation as an energy-saving mechanism to cope with thermal stress. 1st Egas Moniz One Health Symposium.
  3. MARTINS, C., MOUTINHO CABRAL, I., CARVALHO, L.M., DE OLIVEIRA GALVÃO, M.F., SAÚDE, M.L., DREIJ, K., COSTA P.M. (2022). Molecular mechanisms behind the effects from interaction of carcinogens and emerging pollutants: in vivo and in vitro perspective. XVIth International Congress of Toxicology.
  4. GONÇALVES, C., COSTA, P.M. (2022). Unravelling cephalopod venom glands through histological and transcriptomic approaches. Encontro Ciência’22.
  5. Barbosa, A.J.M.; Arianna Nurrito; Ana Margarida Dias; Soares, Cátia; Lychko, Iana; Roque, ACA. "Modeling studies of reflectin de novo peptide assembly". Paper presented in 15th National Physical Chemistry Meeting (15ENQF) and 4th Computational Chemistry Symposium, 2023.
  6. Carlos Costa; Barbosa, A.J.M.; Ana Margarida Dias; Roque, ACA. "Affinity reagents towards the SARS-CoV-2 spike protein". Paper presented in BPP2022 Biopartitioning & Purification Conference, 2022.

Posters (national meetings)

  1. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. (2022). Advances on the venom glands of Cephalopoda: Targets for the prospecting of novel bioactives. UCIBIO Scientific Advisory Board Meeting.
  2. Title: Detecting land-surface changes from space: Porting the Aqua Monitor application from Google Earth Engine
    • date: 2022-03-22
    • Authors: B. Backeberg, Z. Benta, M. David, G. Donchyts, J. Gomes, T.Gonçalves, J. Langemeijer, J. Pina, M. Viana
    • Conference: First Copernicus National Conference Évora, Portugal

Thesis / Dissertation

PhD Thesis

Finished

  1. On the measurement and interpretation of the fluxes of galactic cosmic-ray nuclei Eduardo Bueno (https://doi.org/10.33612/diss.253636377)
  2. Guilherme Guedes A global approach to physics beyond the Standard Model (https://hdl.handle.net/10481/76867)
  3. Ana Sofia Inácio Measurement of the 130 Te Two-Neutrino Double Beta Decay Half-life with the SNO+ Experiment
  4. Maria Ramos The interplay between collider and astrophysical probes of non-minimal composite Higgs models (https://digibug.ugr.es/bitstream/handle/10481/72877/95029%281%29.pdf?sequence=4)
  5. Correia, M.J. 2022. Tools for the management and conservation of the European eel (Anguilla anguilla): An application to Santo André lagoon. Faculdade de Ciências, Universidade de Lisboa, 203 pp. Submitted in May 2022.

Ongoing

  1. Susana Santos Study of the ttH production and Higgs couplings to Top quarks in the ATLAS experiment

  2. Miguel Orcinha Estudo da modulação Solar no fluxo de raios cósmicos com dados da experiência AMS

  3. The effects of proton therapy on protein self-organization: potential benefits for neurodegenerative disorders Carina Coelho (UL/FCUL)

  4. Adaptive dose reconstruction with online in-vivo range verification in particle therapy Mariana Brás (UL/IST)

  5. Developing Multi-Beam FLASH with Proton Beams Joana Leitão (UL/IST)

  6. Radiation Damage of Optical Components in Scintillator Detectors: from the ATLAS/LHC Tile Calorimeter to Future Experiments Beatriz Pinheiro Pereira (UL/IST)

  7. Radiation Damage of the TileCal Optics components at the High Luminosity LHC phase Rudnei Machado (UL/IST)

  8. Raios Cósmicos: desenvolvimento de módulos de divulgação através design participativo Luís Afonso

  9. Reaching for PeVatrons with the future Southern Wide-field Gamma-ray Observatory Lucio Gibilisco (UL/IST)

  10. Development of microdosimetric detectors for radiobiology in hadron therapy facilities Cristiana Rodrigues (UL/FCUL)

  11. Accelerating the ATLAS Trigger system with Graphical Processing Units Nuno Fernandes (UL/IST)

  12. Measurement of Collider Neutrinos with the SND@LHC Experiment Guilherme Soares (UL/IST)

  13. Disentangling and Quantifying Jet-Quenching With Generative Deep Learning João Arruda Gonçalves (UL/IST)

  14. Enhanced Searches with the Pierre Auger Observatory in the Era of Multi-messenger Astrophysics Alexandra Fernandes (U.Minho)

  15. Measurements of Short Range Correlations on Exotic Nuclei at R3B using TRPCs Manuel Xarepe (UL/FCUL)

  16. Jetography in Heavy Ion Collisions André Cordeiro (UL/IST)

  17. AutoBSM: Validating Beyond the Standard Model Physics with Machine Learning Fernando Souza (U.Minho)

  18. Study of lepton universality in top quarks pairs events Giacomo Da Molin (UL/IST)

  19. Multi-messenger physics with the Pierre Auger Observatory and SWGO Pedro Costa (UL/IST)

  20. The Partonic Structure of Hadrons Eduardo Ferreira (UL/IST)

  21. Formal and phenomenological studies in the high energy limit of QCD Dario Vaccaro (UL/IST)

  22. Characterization of liquid argon detectors for next generation neutrino physics Wallison Campanelli (UL/FCUL)

  23. Differential tracking on disinformation websites and its impact on search engine results Íris Damião (UL/IST)

  24. Probing CP couplings in ttX production at the Run3 of the LHC Esteban Chalbaud (U.Coimbra, IDPASC PT-CERN Call 2022/1)

  25. Beatriz C. Almeida, Ricardo S.V. Pires, Kristala L.J. Prather, and Alexandra T.P. Carvalho. The role of zing in transcription factor allosteric regulation.

  26. Ricardo D. González, Warispreet Singh, Lino Ferreira, and Alexandra T.P. Carvalho. Enzymatic synthesis of RNA-peptide conjugates as potential therapeutics for COVID-19.

  27. Inês Carvalho Leonardo (2020.08210.BD)

  28. 2021.07128.BD - Fábio Martins - Rational Development of Nanomedicines for Cardiovascular Diseases.

  29. 2020.09087.BD - Rita Magalhães - In Silico Optimization of Biocatalysts for Plastic Biodegradation.

  30. SFRH/BD/147276/2019 - Susana Maria da Fonseca Fernandes - Development of biocidal formulations for effective biofouling control.

  31. SFRH/BD/136594/2018 - André Figueiredo Pina - Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.

  32. SFRH/BD/137844/2018 - Claudia Tatiana Freitas Vieira - New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

  33. SFRH/BD/136746/2018 - Juliana Ferreira Rocha - Rational development of new biocatalysts for the production of Parkinson Disease Drugs.

  34. Cereja, R. (2023). Phytoplankton in estuarine waters: assessment of temporal and spatial variability. Doutoramento Earthsystems, Faculdade de Ciências, Universidade de Lisboa.

Master Thesis

Finished

  1. João Antunes Particle reconstruction in large liquid scintillator detectors using charge and time signal modelization - the SNO+ neutrino physics experiment (UL/IST)
  2. Daniel Neacsu Dark matter searches at the LHC in models with extended scalar sectors
  3. Lígia Lopes Lecionar através de métodos não convencionais: uma investigação sobre a abordagem lúdica no ensino
  4. Fátima Alcaso Design and optimisation of a xenon TPC with SiPM readout for neutrinoless double beta decay studies
  5. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments
  6. António Oliveira Unsupervised machine learning techniques in high energy physics
  7. Beatriz Artur Impact of Quark-Gluon Plasma in Extensive Air Showers (https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/1972678479055537) )
  8. Rita Silva Optimisation studies for the pion-induced Drell-Yan measurement at the AMBER experiment (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502847)
  9. Henrique Neves From the Concept to Development of Astrophysics Payloads for Gamma Radiation Studies (U.Coimbra)
  10. Carlota Cardoso Flight data analysis of the BERM radiation monitor aboard the BepiColombo mission to Mercury (UL/IST )
  11. Francisco Barba Characterization of thin silicon strip detectors for nuclear experiments (UL/FCUL http://hdl.handle.net/10451/53658)
  12. André Torcato Heavy-baryon spectroscopy in a quark-diquark 1. approach (UL/FCUL http://hdl.handle.net/10451/51871)
  13. David Almeida PandeMedia: an annotated corpus of digital media for issue salience (UL/FCUL http://hdl.handle.net/10451/55576)
  14. Matilde Santos Caracterização e teste funcional de um micro dosímetro de fibras ópticas cintilantes (UL/FCUL http://hdl.handle.net/10451/53766)
  15. Nísia Fernandes Estudo da radiossensibilização de células tumorais do pâncreas com nanopartículas (http://hdl.handle.net/10451/51982)
  16. José Rodrigues Embedded systems for heating and machine learning in microcontrollers (U.Coimbra)
  17. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/left21/dissertacao/565303595502771)
  18. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST https://fenix.tecnico.ulisboa.pt/cursos/meft21/dissertacao/565303595502772)
  19. NUNES, M. (2022). Gene networks modulating heat acclimatization in common gobies: influence of latitude and season in fish metabolism and health. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Carolina Madeira and Pedro M. Costa.
  20. MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica. Advisors: Pedro M. Costa and Ana Rita Grosso.
  21. Brandão, P.R. 2022. Portuguese estuarine systems and their essential ecological role for some fish species: trends and predictions in face of global changes. Mestrado em Ecologia Marinha, Universidade de Lisboa, Faculdade de Ciências. 61 pp.
  22. Santos, Gil, 2022. Activity patterns and tridimensional space use of the European catfish (Silurus glanis) on Belver reservoir.  Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 57 pp. http://hdl.handle.net/10451/51885
  23. Almeida, J. 2022. Trace Metals in the Sado Estuary and their implications on the Environmental Quality. Mestrado em Ciências do Mar, Faculdade de Ciências, Universidade de Lisboa, 103 pp. Submitted in July 2022.

Ongoing

  1. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  2. Carolina Felgueiras Simulations and benchmark of a fast neutron detector for nuclear astrophysics (UL/FCUL)
  3. Magda Duarte Development of high-resolution, three-dimensional muographies (U.Minho)
  4. Joana Vences Next-generation Neutrino Physics: Development of the DUNE laser-based Calibrations
  5. Simão Costa Quark hadronization with B mesons at the LHC (UL/IST)
  6. André Neves Astrofísica Multi-Mensageira com o Telescópio AMEGO da NASA (U.Coimbra)
  7. Francisca Santos Launching the Radiation Hard Electron Monitor aboard the ESA JUICE mission (UL/IST)
  8. Francisco Barreiro Geometrical aspects of jet quenching in small systems
  9. Manuel Mariano Sensitivity of jet sub-structure observables to jet quenching in collisions of light nuclei (UL/IST)
  10. Tomás Almeida Design of a phantom for radiobiology studies (UL/FCUL)
  11. Igor Gago Life prospection on Mars - Studing the Martian Subsurface Radiation Environment (UL/IST)
  12. João Pires Deep Neural Netwoers in Experimental Data Analyses (UL/FCUL)
  13. Milton Freitas Measurement of the number of muons in high occupancy MARTA stations (UL/IST)
  14. Lia Pereira Modelling protein amyloid structures and observing the effects of radiation using the GEANT4-DNA toolkit (UL/FCUL)
  15. João Jantarada Simulation of a p-process in a Supernova Explosion using the NucNet Tools framework (UL/FCUL)
  16. Tomás Sousa Characterization of CsI(Tl) Crystals and Implementation of tools for the CALIFA calorimeter at FAIR
  17. Rita Pestana Development of a standard methodology for online dose calculation in air (UL/FCUL)
  18. Henrique Legoinha Probing the properties of the plasma of quarks and gluons with heavy flavour (UL/IST)
  19. Joana Reis Implementation of quark mass effects in QCD three-jet production observables produced by hadronic decays of the Z-boson at FCC-ee collider (UL/FCUL)
  20. Daniel Salgueiro Design of a fiber-phantom detector for quality assurance in PT (UL/FCUL)
  21. Patrícia Ferreira Machine Learning for Anomaly Detection in the Atlas Trigger at the LHC (U.Coimbra)
  22. Sandro Saltão Optimisation of the vertical separation of multiple scatter events in the LZ detector with applications in the sensitivity to the 0?2β decay of Xe-136 (U.Coimbra)
  23. Gulherme Calé Jet jet correlations in QCD (UL/FCUL)
  24. Céu Neiva Advanced machine learning techniques in rare events research at the Large Hadron Collider (U.Minho)
  25. José Cordeiro Development of an FPGA-accelerated clustering for the ATLAS trigger system (UL/IST)
  26. Catarina Pereira Performance of the TileCal High Voltage Upgrade System (UL/FCUL)
  27. Pedro Lagarelhos Prospects for the HL-LHC of the measurement of the top quark couplings in the ttbar semileptonic channel (UL/IST)
  28. Ana Campos Estudo da dispersão de partículas alfa em filmes finos (UL/FCUL)
  29. Guilherme Crispim Pre-equilibrium of the Quark-Gluon Plasma (UL/IST)
  30. Miguel Lopes Integration of the HiRezBrainPET with a clinical PET/CT system - Image performance evaluation of a prototype for next-generation brain tomography (UL/IST)
  31. Maria Borges Beam tests of a scintillation array detector for high-resolution dosimetry (UL/IST)
  32. Fábio Carmo Cálculo de espetro de emissão de Auger para simulações de radioterapia sensibilizada com nanopartículas de ouro (UL/FCUL)
  33. Marco Leitão Disentangling QGP response using energy flow correlators (UL/IST)
  34. António carvalho Fast algorithms of simulation of the positron-emitting activity generation for multi-beamlet proton therapy treatment plans (U.Coimbra)
  35. Rúben Inácio Exploiting Graph Neural Networks for jet identification in LHC experiments (UL/IST)
  36. João Lopes Looking for (de)coherence effects in the Quark-Gluon Plasma (UL/IST)
  37. Nuno Madureira Jet substructure tools to identify hadronization timescales (UL/IST)
  38. Ana Filipa Fernandes (MSc in Biotechnology / FCT-NOVA)

Patents

  1. EP21306547 / BNT231376EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, S. Routier - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (Indole derivaties) 04 November 2021
  2. EP21306521 / BNT231394EP00 - Vincent Parissi, Sérgio F. Sousa, D. Lapaillere, O. Delelis, L. Meertens, S. Gallois-Montbrun, M. Teulade-Fichou, R. Lartia, G. Bordeau - Pharmaceutical composition, its use as a drug and new compounds, especially for treating SARS-CoV-2 infection (triphenylamine derivatives) 29 October 2021
  3. Alexandra T.P. Carvalho, Beatriz C. Almeida, Pedro R. Figueiredo, Daniel F.A.R. Dourado, Stephanie Paul, Derek J. Quinn, Thomas S. Moody, Andreia F. Sousa, and Armando J.D. Silvestre. Novel Variants of Hyperthermophilic Carboxylesterase for Polymer Synthesis (PCT/IB2022/051111) 2022.

Datasets

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Glycera alba. Direct submission to GenBank – Accession OL606744
  2. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Serine protease inhibitor Kazal-type from Glycera alba. Direct submission to GenBank – Accession OL606745
  3. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich secretory protein from Hediste diversicolor. Direct submission to GenBank – Accession OL606746
  4. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Thyrostimulin beta-5 subunit from Hediste diversicolor. Direct submission to GenBank – Accession OL606747
  5. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Glycera alba. Direct submission to GEO – Accession GPL31947
  6. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Whole-transcriptome dataset for Hediste diversicolor. Direct submission to GEO – Accession GPL31948
  7. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Sepia officinalis. Direct submission to GenBank - Accession number: OP198203 (under publication embargo)
  8. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. SE-cephalotoxin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198204 (under publication embargo)
  9. GONÇALVES, C., MOUTINHO CABRAL, I., GROSSO, A.R., COSTA, P.M. Venom Insulin from Sepia officinalis. Direct submission to GenBank - Accession number: OP198205 (under publication embargo)
  10. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209720 (under publication embargo)
  11. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Cysteine-rich venom protein (latisemin-like) from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209721 (under publication embargo)
  12. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Chitinase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209722 (under publication embargo)
  13. GONÇALVES, C., GROSSO, A.R., COSTA, P.M. Hyaluronidase from Octopus vulgaris. Direct submission to GenBank - Accession number: OP209723 (under publication embargo)
  14. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Cysteine-rich venom protein from Eulalia sp. Direct submission to GenBank – Accession OP254189 (under publication embargo)
  15. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12A from Eulalia sp. Direct submission to GenBank – Accession OP254190 (under publication embargo)
  16. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M12B from Eulalia sp. Direct submission to GenBank – Accession OP254191 (under publication embargo)
  17. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Peptidase M13 from Eulalia sp. Direct submission to GenBank – Accession OP254192 (under publication embargo)
  18. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Serine protease from Eulalia sp. Direct submission to GenBank – Accession OP254193 (under publication embargo)
  19. RODRIGO, A.P., MOUTINHO CABRAL, I., ALEXANDRE, A., COSTA, P.M. Hyaluronidase from Eulalia sp. Direct submission to GenBank – Accession OP254194 (under publication embargo)

2021

Journal Paper with direct contribution

  1. de Almeida, Duarte Sampaio Belchior. Urban Tourism Crowding Dynamics: Carrying Capacity and Digital Twinning. Diss. ISCTE-Instituto Universitario de Lisboa (Portugal), 2021. https://www.proquest.com/openview/e302b10227ebcf57af55fb137348500c/1?pq-origsite=gscholar&cbl=2026366&diss=y
  2. Almeida, Beatriz C., et al. "Transcription factor allosteric regulation through substrate coordination to zinc." NAR genomics and bioinformatics 3.2 (2021): lqab033. https://doi.org/10.1093/nargab/lqab033
  3. Silva, João Manuel, et al. "Burden of Liver Cirrhosis in Portugal between 2010 and 2017." GE-Portuguese Journal of Gastroenterology 28.3 (2021): 153-161. https://doi.org/10.1159/000510729
  4. Cabrita, Alexandra, et al. "Multiple pathways to homothallism in closely related yeast lineages in the Basidiomycota." Mbio 12.1 (2021): e03130-20. https://doi.org/10.1128/mBio.03130-20
  5. Fortunato, A. B., et al. "Sediment dynamics and morphological evolution in the Tagus Estuary inlet." Marine Geology 440 (2021): 106590. https://doi.org/10.1016/j.margeo.2021.106590
  6. Figueiredo, Pedro R., Ricardo D. González, and Alexandra TP Carvalho. "Human Carboxylesterase 2 in Cocaine Metabolism." Molecular Catalysis 515 (2021): 111938. https://doi.org/10.1016/j.mcat.2021.111938
  7. Figueiredo, Pedro R., et al. "Introduction of a Glycine Linker Connecting the Heavy and Light Chains in Synthetic Cardosin B-Derived Rennet Changes the Specificity of Subpocket S3′." The Journal of Physical Chemistry B 125.17 (2021): 4368-4374. https://doi.org/10.1021/acs.jpcb.1c01826
  8. Pinto, R., Sobral, D., Grosso, A.R. (2021). Comprehensive Detection of Pseudogenes Transcribed by Readthrough. In: Poliseno, L. (eds) Pseudogenes. Methods in Molecular Biology, vol 2324. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1503-4_6
  9. Crispim Romão, M., Castro, N.F., Milhano, J.G. et al. Use of a generalized energy Mover’s distance in the search for rare phenomena at colliders. Eur. Phys. J. C 81, 192 (2021). https://doi.org/10.1140/epjc/s10052-021-08891-6
  10. Another look at the three-gluon vertex in the minimal Landau gauge, Guilherme T.R. Catumba (Coimbra U. and Valencia U., IFIC), Orlando Oliveira (Coimbra U.), Paulo J. Silva (Coimbra U.) https://doi.org/10.22323/1.396.0467
  11. PTPARL-D: an annotated corpus of forty-four years of Portuguese parliamentary debates Paulo Almeida, Manuel Marques-Pita, and Joana Gonçalves-Sá Corpora 2021 16:3, 337-348 https://www.euppublishing.com/doi/full/10.3366/cor.2021.0226
  12. Borges, Sousa et al, 2021 (Eurosurveillance); https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2021.26.10.2100130
  13. Borges, Isidro et al, 2021 (Viruses); https://www.mdpi.com/1999-4915/13/4/604
  14. Borges, Isidro, Trovão et al, 2021 (pre-print in medRxiv); https://www.medrxiv.org/content/10.1101/2021.02.22.21252216v1
  15. Borges et al, 2021 (pre-print in Virological.org); https://virological.org/t/long-term-evolution-of-sars-cov-2-in-an-immunocompromised-patient-with-non-hodgkin-lymphoma/621
  16. Bento, et al. "Automated Analysis of Distributed Tracing: Challenges and Research Directions." Journal of Grid Computing 19.1 (2021): 1-15.
  17. RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  18. RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  19. S. Aune, J. Bortfeldt, F. Brunbauer, C. David, D. Desforge, G. Fanourakis, M. Gallinaro, F. García, I. Giomataris, T. Gustavsson, F.J. Iguaz, M. Kebbiri, K. Kordas, C. Lampoudis, P. Legou, M. Lisowska, J. Liu, M. Lupberger, O. Maillard, I. Maniatis, I. Manthos, H. Müller, E. Oliveri, T. Papaevangelou, K. Paraschou, M. Pomorski, B. Qi, F. Resnati, L. Ropelewski, D. Sampsonidis, L. Scharenberg, T. Schneider, L. Sohl, M. van Stenis, A. Tsiamis, Y. Tsipolitis, S.E. Tzamarias, A. Utrobicic, R. Veenhof, X. Wang, S. White, Z. Zhang, Y. Zhou, Timing performance of a multi-pad PICOSEC-Micromegas detector prototype, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment,Volume 993, 2021, https://doi.org/10.1016/j.nima.2021.165076
  20. Rodrigues M, Martins R, Rogeiro J, Fortunato AB, Oliveira A, Cravo A, Jacob J, Rosa A, Azevedo A, Freire P. 2021 (in press). A web-based observatory for biogeochemical assessment in coastal regions, Journal of Environmental Informatics.
  21. Rodrigues, M., A. Rosa, A. Cravo, Jacob, J., Fortunato, A.B. 2021 (in press). Effects of Climate Change and anthropogenic pressures in the water quality of a coastal lagoon (RIa Formosa, Portugal), Science of the Total Environment.
  22. Rato, A.S., Alexandre, C.M., Almeida, P.R., Costa, J.L., Quintella, B.R. 2021. Effects of hydropeaking on the behaviour, fine-scale movements and habitat selection of an Iberian cyprinid fish. River Research and Applications
  23. Sroczyńska, K., A. Conde, P. Chainho & H. Adão (2021). How nematode morphometric attributes integrate with taxonomy-based measures along an estuarine gradient. Ecological Indicators 124: 107384. https://doi.org/10.1016/j.ecolind.2021.107384
  24. Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M. 2021. Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res 49:D660–D666. (PMID: 33068420)
  25. MODELING THE IMPACTS OF HARBOR DREDGING AND DISPOSAL ON COASTAL WATER-LEVELS AND RUN-UP WITH XBEACH, Coastal Dynamics Conference, 28 June-2 July 2021.
  26. Pereira, C., Maranha, J. R. e Cardoso R. (2021). A general mathematical framework for modelling soil-water retention behaviour. 3rd Pan-American Conference on Unsaturated Soils, Rio de Janeiro, Brazil (aceite para publicação).
  27. CRAVO A., ROSA A., RODRIGUES M. (2020). Effects of climate change and anthropogenic pressures in the water quality of the Ria Formosa (Portugal). XX Seminário Ibérico de Química Marina - SIQUIMAR 2020, 1 pp.
  28. Mendes, Lourenço S.; Lara, Javier L.; Viseu, Maria T. 2021. "Is the Volume-of-Fluid Method Coupled with a Sub-Grid Bubble Equation Efficient for Simulating Local and Continuum Aeration?" Water 13, no. 11: 1535.
  29. Balduíno César Mateus,Mateus Mendes,José Torres Farinha nd António Marques Cardoso "Anticipating Future Behavior of an Industrial Press Using LSTM Networks" Appl. Sci. 2021, 11(13), 6101; https://doi.org/10.3390/app11136101
  30. Paolillo, A., Sinval, J., Silva, S. A., & Scuderi, V. E. (2021). The relationship between inclusion climate and voice behaviors beyond social exchange obligation: The role of psychological needs satisfaction. Sustainability, 13(18), 1-19. https://doi.org/10.3390/su131810252
  31. Balduino Mateus, Mateus Mendes, José Torres Farinha, António Marques Cardoso, Data Analysis for Predictive Maintenance Using Time Series and Deep Learning Models – A Case Study in a Pulp Paper Industry, in Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
  32. João Rodrigues, José Torres Farinha, António Marques Cardoso1 and Mateus Mendes, Prediction of Sensor Values in Paper Pulp Industry Using Neural Networks, Proceedings of the TEPEN 2021 & IncoME-VI, Oct 20-23, 2021, Tianjin, China.
  33. Pais, P., Oliveira, J., Almeida, V., Yilmaz, M., Monteiro, P.T., Teixeira, M.C. “Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host survival and probiotic activity based on promoter sequence variability”. Genomics, 113(2): 530-539, 2021.
  34. Mendes S, et al. (2021) Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. HEREDITY https://doi.org/10.1038/s41437-021-00466-1.
  35. Clemente F, et al. (2021) The genomic history of the Aegean palatial civilizations CELL 184: P2565-2586.e21 https://doi.org/10.1016/j.cell.2021.03.039
  36. Palma JHN, 2017, CliPick – Climate change web picker. A tool bridging daily climate needs in process based modelling in forestry and agriculture, Forest Systems [S.l.], v. 26, n. 1, p. eRC01, may 2017. ISSN 2171-9845. https://doi.org/10.5424/fs/2017261-10251
  37. SANTOS, M.L., D’AMBROSIO, M., RODRIGO, A.P., PAROLA, A.J. & COSTA, P.M. (2021). A transcriptomic approach to the metabolism of tetrapyrrolic photosensitizers in a marine annelid. Molecules 26, 3924. (doi: 10.3390/molecules26133924).
  38. RODRIGO, A.P., GROSSO, A.R., BAPTISTA, P.V., FERNANDES, A.R., & COSTA, P.M. (2021). A transcriptomic approach to the recruitment of venom proteins in a marine annelid. Toxins 13, 97 (doi: 10.3390/toxins13020097).
  39. RODRIGO, A.P., MENDES, V.M., MANADAS, B., GROSSO, A.R., ALVES DE MATOS, A.P., BAPTISTA, P.V., COSTA, P.M., FERNANDES, A.R. (2021). Specific antiproliferative properties of proteinaceous toxin secretions from the marine annelid Eulalia sp. onto ovarian cancer cells. Marine Drugs 19, 31 (doi: 10.3390/md19010031).
  40. Assessing the effects of PMM2 variants on protein stability Quelhas, D., Carneiro, J., Lopes-Marques, M., Jaeken, J., Martins, E., Rocha, J.F., Teixeira Carla, S.S., Ferreira, C.R., Sousa, S.F., Azevedo, L. (2021) Molecular Genetics and Metabolism, 134 (4), pp. 344-352. DOI: 10.1016/j.ymgme.2021.11.002
  41. In silico identification of possible inhibitors for protein kinase B (PknB) of mycobacterium tuberculosis Vieira, T.F., Martins, F.G., Moreira, J.P., Barbosa, T., Sousa, S.F. (2021) Molecules, 26 (20), art. no. 6162, .
  42. Structure and thermodynamics of empty clathrate hydrates below the freezing point of water† Fernando J. A. L. Cruz  *a and José P. B. Motaa Phys. Chem. Chem. Phys., 2021,23, 16033-16043 https://doi.org/10.1039/D1CP00893E
  43. The milk-derived lactoferrin inhibits V-ATPase activity by targeting its V1 domain Santos-Pereira, C., Rocha, J.F., Fernandes, H.S., Rodrigues, L.R., Côrte-Real, M., Sousa, S.F. (2021) International Journal of Biological Macromolecules, 186, pp. 54-70. DOI: 10.1016/j.ijbiomac.2021.06.200
  44. Compensatory epistasis explored by molecular dynamics simulations Serrano, C., Teixeira, C.S.S., Cooper, D.N., Carneiro, J., Lopes-Marques, M., Stenson, P.D., Amorim, A., Prata, M.J., Sousa, S.F., Azevedo, L. (2021) Human Genetics, 140 (9), pp. 1329-1342. DOI: 10.1007/s00439-021-02307-x
  45. The complete catalytic mechanism of xanthine oxidase: A computational study Ribeiro, P.M.G., Fernandes, H.S., Maia, L.B., Sousa, S.F., Moura, J.J.G., Cerqueira, N.M.F.S.A. (2021) Inorganic Chemistry Frontiers, 8 (2), pp. 405-416. DOI: 10.1039/d0qi01029d
  46. The Catalytic Mechanism of Pdx2 Glutaminase Driven by a Cys-His-Glu Triad: A Computational Study Pina, A.F., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) ChemBioChem, DOI: 10.1002/cbic.202100555
  47. New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach Fernandes, H.S., Sousa, S.F., Cerqueira, N.M.F.S.A. (2021) Molecular Diversity DOI: 10.1007/s11030-021-10259-7
  48. Identification of new potential inhibitors of quorum sensing through a specialized multi-level computational approach Martins, F.G., Melo, A., Sousa, S.F. (2021) Molecules, 26 (9), art. no. 2600 DOI: 10.3390/molecules26092600
  49. Morgado P., L. Cavique (2021), Seleção de atributos usando LAID e sua implementação em sistemas de computação de alto desempenho, Revista de Ciências da Computação n.16, pp. 93-112.
  50. Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
  51. Light Higgs searches in t(t)over-bar phi production at the LHC Duarte Azevedo, Rodrigo Capucha, Emanuel Gouveia, Antonio Onofre, Rui Santos J. High Energy Phys. 4 (2021) 77 Jrn-Dir 2021-04-09 10.1007/JHEP04(2021)077
  52. Measurement of the associated production of a Higgs boson decaying into b-quarks with a vector boson at high transverse momentum in pp collisions at \sqrt(s)=13TeV with the ATLAS detector ATLAS Collaboration (2927 authors) Phys. Lett. B 816 (2021) 136204 Jrn-Dir 2021-04-27 10.1016/j.physletb.2021.136204
  53. A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
  54. Configuration and performance of the ATLAS b-jet triggers in Run 2 ATLAS Collaboration Eur. Phys. J. C 81 (2021) 1087 Jrn-Dir 2021-12-01 10.1140/epjc/s10052-021-09775-5
  55. Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
  56. Measurement of the Fluctuations in the Number of Muons in Extensive Air Showers with the Pierre Auger Observatory Pierre Auger Collaboration (360 authors) Phys. Rev. Lett. 126 (2021) 152002 Jrn-Dir 2021-04-16 10.1103/PhysRevLett.126.152002
  57. Timing performance of a multi-pad PICOSEC-Micromegas detector prototype M. Gallinaro et al. Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165076 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165076
  58. Modeling the timing characteristics of the PICOSEC Micromegas detector J. Bortfeldt et al. (41 authors) Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 993 (2021) 165049 Jrn-Dir 2021-03-21 10.1016/j.nima.2021.165049
  59. Measurement of the CP-violating phase phi(s) in the B-s(0) -> J/psi phi(1020) -> mu(+)mu-K+K- channel in proton-proton collisions at root s=13 TeV CMS Collaboration (2307 authors) Phys. Lett. B 816 (2021) 136188 Jrn-Dir 2021-05-10 10.1016/j.physletb.2021.136188
  60. Vector Boson Scattering Processes: Status and Prospects M. Gallinaro et al. arXiv:2106.01393 Jrn-Dir 2021-06-02
  61. Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector CMS MTD Collaboration (199 authors) J. Instrum. 16 (2021) P07023 Jrn-Dir 2021-07-01 10.1088/1748-0221/16/07/P07023
  62. Test beam characterization of sensor prototypes for the CMS Barrel MIP Timing Detector D. Bastos, M. Gallinaro, T. Niknejad, J.C. Silva, J. Varela, et al. JINST 16 (2021) P07023 Jrn-Dir 2021-07-15
  63. Observation of B0s mesons and measurement of the B0s/B+ yield ratio in PbPb collisions at 5.02 TeV CMS Collaboration arXiv:2109.01908 Jrn-Dir 2021-09-04
  64. Advances in Multi-Variate Analysis Methods for New Physics Searches at the Large Hadron Collider M. Gallinaro, G. Strong, J. Varela, et al. Rev.Phys. 7 (2021) 100063 Jrn-Dir 2021-11-06
  65. Improving sensitivity to low-mass dark matter in LUX using a novel electrode background mitigation technique D. S. Akerib et al. Phys. Rev. D 104, 012011 Jrn-Dir 2021-07-19 https://doi.org/10.1103/PhysRevD.104.012011
  66. Projected sensitivity of the LUX-ZEPLIN experiment to the two neutrino and neutrinoless double beta decays in Xe-134 D. S. Akerib et al. Phys. Rev. C 104 (2021) 065501 Jrn-Dir 2021-12-10 https://doi.org/10.1103/PhysRevC.104.065501
  67. Simulation of 125 I Auger emission spectrum with new atomic parameters from MCDHF calculations J.M. Sampaio, J. Ekman, B.P.E. Tee, R. du Rietz, B.Q. Lee, M.S. Pires, P. Jönsson, T. Kibédi , M. Vos , A.E. Stuchbery, and  J.P. Marques J. Quant. Spectr. Rad. Tranf. 227, 107964 (2022) Jrn-Dir 2021-10-12 10.1016/j.jqsrt.2021.107964
  68. Optical readout studies of the Thick-COBRA gaseous detector F. Garcia, F.M. Brunbauer, M. Lisowskac, H. Müller, E. Oliveri, D. Pfeiffer, L. Ropelewski, J. Samarati, F. Sauli, L. Scharenber, A.L.M. Silva, M. van Stenis, R. Veenhof and J.F.C.A. Veloso JINST 16 (2021) T01001 Jrn-Dir 2021-01-07 10.1088/1748-0221/16/01/T01001
  69. Operation of a novel large area, high gain, single stage gaseous electron multiplier F.D. Amaro, R. Roque, N.V. Duarte, A. Cortez, and J.A. Mir Journal of Instrumentation 16 (2021) P01033 Jrn-Dir 2021-01-27 10.1088/1748-0221/16/01/P01033
  70. Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS A. Oliveira, A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, P. Lopes Anabela Oliveira, André B. Fortunato, Marta Rodrigues, Alberto Azevedo, João Rogeiro, Samuel Bernardo, Laura Lavaud, Xavier Bertin, Alphonse Nahon, Gonçalo de Jesus, Miguel Rocha, Pedro Lopes, Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, Volume 143, 2021 Jrn-Dir 2021-06-13 10.1016/j.envsoft.2021.105132
  71. New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories R. Conceição, L. Peres, M. Pimenta, B. Tomé Eur. Phys. J. C 81, 80 (2021) Jrn-Dir 2021-01-25 10.1140/epjc/s10052-021-08883-6
  72. Muon identification in a compact single-layered water Cherenkov detector  and gamma/hadron discrimination using Machine Learning techniques R. Conceição, B. S. González, A. Guillén, M. Pimenta and B.  Tomé Eur. Phys. J. C 81, 542 (2021) Jrn-Dir 2021-05-13 10.1140/epjc/s10052-021-09312-4
  73. The SNO+ Experiment M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P08059 (2021) Jrn-Dir 2021-08-25 10.1088/1748-0221/16/08/P08059
  74. Optical calibration of the SNO+ detector in the water phase with deployed sources M.R. Anderson et al. (SNO+ Collaboration) JINST 16 P10021 Jrn-Dir 2021-10-19 10.1088/1748-0221/16/10/P10021
  75. Quark Mass Function from an OGE-type Interaction in Minkowski Space E. P. Biernat, F. Gross, M. T. Peña, A. Stadler, S. Leitão Acta Phys. Polon. Supp. 14 (2021) 9 Jrn-Dir 2021-01-01 10.5506/APhysPolBSupp.14.9
  76. Fundamental Parameters Related to Selenium Kα and Kβ Emission X-Ray Spectra Mauro Guerra, Jorge M. Sampaio, Gonçalo R. Vília, César A. Godinho, Daniel Pinheiro, Pedro Amaro, José P. Marques, Jorge Machado, Paul Indelicato, Fernando Parente, José Paulo Santos Atoms 9,8 (2021) Jrn-Dir 2021-01-22 10.3390/atoms 9010008
  77. Peeling graphite layer by layer reveals the charge exchange dynamics of ions inside a solid Anna Niggas, Sascha Creutzburg, Janine Schwestka, Benjamin Wöckinger, Pedro L. Grande, Bernhard C. Bayer, José P. Marques, Friedrich Aumayr, Robert Bennett, Richard A. Wilhelm Communications Physics 4, 1801 (2021). Jrn-Dir 2021-08-12 10.1038/s42005-021-00686-1
  78. NeuLAND: The high-resolution neutron time-of-flight spectrometer for R3B at FAIR K. Boretzky, I. Gasparic, M. Heil, et al. Nucl. Instr. and Methods A 1014, 165071 (2021) Jrn-Dir 2021-10-21 10.1016/j.nima.2021.165701
  79. The large COMPASS polarized solid ammonia target for Drell–Yan measurements with a pion beam V. Andrieux, C. Pires, C. Quintans et al NIM A 1025 (2022) 166069 Jrn-Dir 2021-12-10 https://doi.org/10.1016/j.nima.2021.166069
  80. Constraining the energy spectrum of neutral pions in ultra-high-energy proton-air interactions Lorenzo Cazon, Ruben Conceição, Miguel Alexandre Martins, and Felix Riehn Phys. Rev. D 103, 022001 Jrn-Dir 2021-01-08 10.1103/PhysRevD.103.022001
  81. Running in the ALPs M. Chala, G. Guedes, M. Ramos and J. Santiago Eur. Phys. J. C (2021) 81: 181 Jrn-Dir 2021-02-23 10.1140/epjc/s10052-021-08968-2
  82. Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
  83. New leptons with exotic decays: collider limits and dark matter complementarity Guilherme Guedes, José Santiago arXiv:2107.03429 Jrn-Dir 2021-07-09
  84. Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
  85. Finding new physics without learning about it: anomaly detection as a tool for searches at colliders M. Crispim Romao, N. F. Castro, R. Pedro EPJC 81 (2021) 27 Jrn-Dir 2021-01-15 10.1140/epjc/s10052-020-08807-w
  86. Use of a Generalized Energy Mover's Distance in the Search for Rare Phenomena at Colliders M. Crispim Romao, N.F. Castro , J.G. Milhano, R. Pedro, T. Vale Eur. Phys. J. C 81, 192 (2021) Jrn-Dir 2021-02-26 10.1140/epjc/s10052-021-08891-6
  87. A continuous integration and web framework in support of the ATLAS Publication Process Juan Pedro Araque Espinosa, Gabriel Baldi Levcovitz, Riccardo-Maria Bianchi, Ian Brock, Tancredi Carli, Nuno Filipe Castro, Alessandra Ciocio, Maurizio Colautti, Ana Carolina Da Silva Menezes, Gabriel De Oliveira da Fonseca, Leandro Domingues Macedo Alves, Andreas Hoecker, Bruno Lange Ramos, Gabriela Lemos Lúcidi Pinhão, Carmen Maidantchik, Fairouz Malek, Robert McPherson, Gianluca Picco, Marcelo Teixeira Dos Santos JINST 16 (2021) T05006 Jrn-Dir 2021-05-11 10.1088/1748-0221/16/05/T05006
  88. Deep Learning for the Classification of Quenched Jets L. Apolinário, N. F. Castro, M. Crispim Romão, J. G. Milhano, R. Pedro, F. C. R. Peres JHEP11 (2021) 219 Jrn-Dir 2021-11-29 10.1007/JHEP11(2021)219
  89. A source of very energetic oxygen located in Jupiter’s inner radiation belts Elias Roussos,Christina Cohen, Peter Kollmann, Marco Pinto, Norbert Krupp, Patricia Gonçalves, Konstantinos Dialynas Space Advances, Vol 8, Issue 2 Jrn-Dir 2022-01-14 DOI: 10.1126/sciadv.abm4234
  90. Fortunato, A.B., P. Freire, B. Mengual, X. Bertin, C. Pinto, K. Martins, T. Guérin, A. Azevedo 2021.Sediment dynamics and morphological evolution in the Tagus Estuary inlet, Marine Geology, 440: 106590. DOI: 10.1016/j.margeo.2021.106590
  91. Oliveira, A., A.B. Fortunato, M. Rodrigues, A. Azevedo, J. Rogeiro, S. Bernardes, L. Lavaud, X. Bertin, A. Nahon, G. Jesus, M. Rocha, P. Lopes 2021. Forecasting contrasting coastal and estuarine hydrodynamics with OPENCoastS, Environmental Modelling & Software, 143: 105132. DOI: 10.1016/j.envsoft.2021.105132
  92. Rocha, M; Oliveira, A.; Freire, P.; Fortunato, A.B.; Nahon, A.; Barros, J.L.; Azevedo, A.; Oliveira, F.S.B.F.; Rogeiro, J.; Jesus, G.; Martins, R.J.; Santos, P.P.; Tavares, A.O.; Oliveira, J. 2021. Multi-Hazard WebGIS Platform for Coastal Regions, APPLIED SCIENCES-BASEL, 11/11: 5253, DOI: 10.3390/app11115253
  93. Rodrigues, M., R. Martins, J. Rogeiro, A. B. Fortunato, A. Oliveira, A. Cravo, J. Jacob, A. Rosa, A. Azevedo, P. Freire 2021. A Web-Based Observatory for Biogeochemical Assessment in Coastal Regions, Journal of Environmental Informatics, 38/1: 1.15. DOI:10.3808/jei.202100450
  94. Fassoni-Andrade, A. C., Durand, F., Moreira, D., Azevedo, A., dos Santos, V. F., Funi, C., and Laraque, A.: Comprehensive bathymetry and intertidal topography of the Amazon estuary, Earth Syst. Sci. Data, 13, 2275–2291, https://doi.org/10.5194/essd-13-2275-2021, 2021.

Thesis / Dissertation

PhD Thesis

Finished

  1. RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
  2. Henrique Silva Fernandes Título: Computational studies addressed to PLP-Dependent enzymes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
  3. Carla Sílvia Silva Teixeira Título: Computational studies addressed to multifunctional enzyme complexes Programa Doutoral em Química, FCUP/FEUP, Univ Porto Concluída em Julho de 2021
  4. Cátia Sofia dos Santos Pereira Novel insights on the interaction of lactoferrin with proton pumping ATPases towards understanding its antifungal and anticancer activities Programa Doutoral em Biologia Molecular e Ambiental Molecular (PDBMA), Univ Minho Concluída em Setembro de 2021
  5. RODRIGO, A.P.C. (2021). The biotechnological value of a novel potent marine biotoxin from the polychaete worm Eulalia viridis: chemical and toxicological evaluation. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 246 pp. Status: Approved. Classification: N/A. FCT grant ref. SFRH/BD/109462/2015
  6. Ana Paula Pereira Peixoto Search for new interactions in the top quark sector CERN-THESIS-2021-149.pdf
  7. Emanuel Demétrio Mendes Gouveia Universidade do Minho Escola de Ciências Tese de Doutoramento Física Agosto de 2021 Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment at the LHC
  8. Holography, QCD and Regge Theory Artur Jorge Carvalho Amorim de Sousa (https://hdl.handle.net/10216/136375)
  9. PhD thesis of Paulo Braz, "Sensitivity to the 0νββ decay of 136Xe and development of Machine Learning tools for pulse classification for the LUX-ZEPLIN experiment”
Ongoing
  1. GONÇALVES, C. (2019-present). Coleoid venoms: Predicting cephalotoxin function and biotechnological applications from ecological and evolutionary traits. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (January 2019). FCT grant ref. SFRH/BD/144914/2019
  2. 2021.07128.BD
  3. 2020.09087.BD
  4. MARTINS, C. (2017-present). Carcinogenic toxicants and emerging pollutants. A comprehensive case-study on toxicant interactions in vivo and in vitro: from Molecular Toxicology to Environmental Risk Assessment. Ph.D. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: Ongoing. (September 2017). FCT grant ref. SFRH/BD/120030/2016
  5. Inês Raquel Carvalho Leonardo 2020.08210.BD Tecnologias Agrárias e Alimentares Portugal Universidade Nova de Lisboa
  6. 2021.07128.BD Rational Development of Nanomedicines for Cardiovascular Diseases.
  7. 2020.09087.BD In Silico Optimization of Biocatalysts for Plastic Biodegradation.
  8. SFRH/BD/147276/2019 Development of biocidal formulations for effective biofouling control.
  9. SFRH/BD/136594/2018 Innovative approach to fight tuberculosis and malaria targeting the extraordinary PLP synthase macromolecular complex.
  10. SFRH/BD/137844/2018 New Drugs Against Biofilm Formation and Development: a Computational and Experimental Approach.

Master Thesis

Finished

  1. Phytoplankton community in the Algarve coastal region: implications to aquaculture production. MSc Thesis in Ciências do Mar. Universidade de Lisboa

  2. CABRAL, I. (2020-present). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. Status: submitted.

  3. SANTOS, M.L. (2021). A transcriptomic approach to the metabolism of porphyrin-like pigments in a marine Polychaeta (Eulalia sp.). M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica. 43 pp. + Appendix. Final status: Approved. Classification: 18 (0-20).

  4. GROU, M. (2021). A molecular and pathophysiological approach to tissue regeneration in the planarian model. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica, 40 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).

  5. PIMPÃO, A. (2021). Novel developments on the association of the AHR-CYP1A1 axis and arterial hypertension related to obstructive sleep apnea. M.Sc. thesis, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte de Caparica (in collaboration with NOVA Medical School), Universidade Nova de Lisboa, Monte de Caparica, 77 pp. + Annexes. Final status: Approved. Classification: 19 (0-20).

  6. Mestrado Informação e Sistemas Empresariais, Univ. Aberta/IST da dissertação intitulada "Feature Selection using LAID and its Implementation on High-Performance Computing Systems" de Paulo Morgado, orientado por L. Cavique e defendido em novembro 2021.

  7. P. Xavier and N. Galambaa) Effect of urea on the hydration and aggregation of hydrophobic and amphiphilic solute models: Implications to protein aggregation J. Chem. Phys. 155, 144501 (2021); https://doi.org/10.1063/5.0064707

  8. Manghnani, K. (2021) Extraction and Visualization of Fake News Indicators (Tese de mestrado) - Instituto Superior Técnico, Universidade de Lisboa. Lisboa, Portugal.

  9. Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.

  10. "A broad evolutionary perspective of alcoholic fermentation in a non-conventional yeast clade", a ser publicada em Abril 2021 (aluna: Catarina Lagoas)

  11. Mestrado Bolonha em Bioengenharia e Nanossistemas, IST/LISBOA "Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics" Gabriel Nascimento Serafim

  12. Mariana Luz, Projecto de mestrado com o titulo: "Assessing the Prevalence of Transcription Readthrough in healthy tissues through computational approaches", Mestrado em Genetica Molecular e Biomedicina, FCT-NOVA;

  13. Valerio Fiori, Projecto de mestrado com o titulo: "Finding Biomarkers of Metastatic Potential in Colorectal Cancer", Mestrado em Bioinformatica e Biologia Computacional, FCUL

  14. B. Oliveira, "High-Pressure He/H2/O2 Mixtures Combustion on the ESTHER Driver: Experiment and Modeling", Ms.C. Thesis, Eng. Aeroespacial, Instituto Superior Técnico, Universidade de Lisboa.

  15. Ricardo Silva (2021), Atomic structure calculations in lanthanide ions relevant to kilonovae,FCUL

  16. André Cordeiro, Towards the space-time picture of a QCD parton shower, IST

  17. Filipa Baltazar (2021), A Monte Carlo based study of the FLASH effect in radiotherapy with protons, IST

  18. Miguel Martins, Measurement of the features of muon number distribution using MARTA engineering array, IST

  19. Alexandra Fernandes, Measurement of the features of muon number distribution using MARTA engineering array, mestrado em Astronomia e Astrofisica da universidade do Porto

  20. Pedro Costa, Detection of astrophysical neutrinos with a gamma-ray observatory, IST

  21. Laura Peres, A novel energy reconstruction for high-energy gamma-ray wide field of view observatories, IST

  22. Eduardo Ferreira, From light-front wave functions to parton distribution functions, IST MEFT

  23. Nuno Fernandes, Development of GPU-Accelerated Trigger Algorithms for the ATLAS Experiment at the LHC, Mestrado em Engenharia Física Tecnológica IST

  24. Maria Faria, Investigating the flavour anomalies through the rare beauty decay B0→K∗0μ+μ−, IST MEFT

  25. Beatriz Pinheiro Pereira, Radiation damage of the optical components of the ATLAS TileCal calorimeter at the High-Luminosity LHC, IST MEFT

Conference Paper

  1. J. Varela on behalf of the TOFHIR2 design team, TOFHIR2: The readout ASIC of the CMS Barrel MIP Timing Detector, CMS CR-2021/001

  2. Anabela Oliveira, Alberto Azevedo, André B. Fortunato, Marta Rodrigues, João Rogeiro, Pedro Lopes, Samuel Bernardo, Jorge Gomes, João Pina, Mario David, 2021 (in press). OPENCoastS: a tailored coastal forecasting WebGIS service, Proceedings of the 3rd Conference of the Arabian Journal of Geosciences, 4 pp.

  3. “Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.

  4. “A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.

  5. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.

  6. GONÇALVES, C., MOUTINHO CABRAL, I., RODRIGO, A.P., FONSECA,D., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A stinging issue: omics and computational tools for the bioprospecting of novel marine toxins. XII European Conference on Marine Natural Products. National University of Ireland, Galway (Ireland), August 2021.

  7. MOUTINHO CABRAL, I. (2021). A computational approach to identify target receptors of marine toxins in the human proteome: Potential biotechnological applications. Jornadas Intercalares das Dissertações Anuais dos Mestrados dos Departamentos de Química e Ciências da Vida 2021. NOVA School of Science and Technology, NOVA University of Lisbon, Monte de Caparica (Portugal), February 2021.

  8. Deciphering the interaction of lactoferrin with V-ATPase towards a deeper understanding of its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  9. Structure-based Virtual Screening, Molecular Dynamics and Free Energy calculations for the identification of novel inhibitors against biofilm formation by C.violaceum Fábio G. Martins, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  10. Structure-based Virtual Screening,Molecular Dynamics and Free Energy calculations for the identification of New Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal

  11. Specialized multi-level computational approach for the identification of novel quorum sensing inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa The 24th meeting of the International Society for Molecular Recognition, Affinity 2021 22-24 June 2021, Lisboa, Portugal (online)

  12. Identification of potential quorum sensing inhibitors through structure-based virtual screening, molecular dynamics, and free energy calculations Fábio G. Martins, André Melo, Sérgio F. Sousa e-Conference on Innovation in Microbial Control, October 7-8 2021, Porto, Portugal (online)

  13. Targeting the PQS system: Discovery of New Quorum Sensing Inhibitors for P. aeruginosa through an in silico methodology Tatiana F. Vieira, Rita P. Magalhães, Manuel Simões, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)

  14. Machine Learning Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa e-Conference on Innovation in Microbial Control October 7-8, 2021, Porto, Portugal (online)

  15. Using Biomolecular Simulations to Understand the Enzymatic Activity of Xanthine Oxidase Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira BioSeminars@UCIBIO July 21st 2021, Lisbon, Portugal (Online)

  16. Exploring the Nitrate and Nitrite Reductase Activity of Xanthine Oxidase – a QM/MM study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira 12th Molybdenum and Tungsten Enzymes Conference (MoTEC 2021) September 28th to October 1st 2021, Marseille, France (Online)

  17. The Nitrate and Nitrite Reductase Activity of Xanthine Oxidase: a Computational Study Henrique S. Fernandes, Sérgio F. Sousa, José J. G. Moura, Luísa B. Maia, Nuno M.F.S.A. Cerqueira XXI SPB National Congress of Biochemistry October 14th to 16th 2021, Universidade de Évora, Évora, Portugal (Online) Note: Award Best Oral Communication

  18. Developed of Inverted Virtual Screening Approaches for the Identification of Protein Targets Associated to the Biological Activity of Specific Molecules Tatiana F. Vieira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  19. A multidisciplinary approach to untangle the mechanisms behind the antifungal activity of lactoferrin Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real 15th International Conference on Lactoferrin: Structure, Function and Applications December 6-10th 2021, Beijing, China (online)

  20. Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family: a step further to assure food safety and quality Inês CARVALHO LEONARDO, Martijn STAATS, Marleen VOORHUIJZEN, Valerie VAN DER VORST, Bas FRONEN, Jorge CAPELO, Maria Teresa BARRETO CRESPO, Frédéric BUSTOS GASPAR November 2021 ISEKI e-conference 2021 - Food Texture, Quality, Safety and Biosecurity in the Global Bioeconomy Online (Austria)

  21. Multilocus DNA metabarcoding of complex mixtures containing members of the Boraginaceae family for food safety and quality assurance Inês Carvalho Leonardo, Martijn Staats, Marleen Voorhuijzen, Valerie van der Vorst, Bas Fronen, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  22. Two-particle Correlations in multi-Regge Kinematics, N. B. de Leon, G. Chachamis and A. S. Vera, arXiv:2112.13794 [hep-ph]; contribution to Low-x workshop 2021

  23. New results on the modification of jet structure in Heavy Ion collisions, Helena Santos, on behalf of the ATLAS, ALICE and CMS Collaborations, PoS(LHCP2021)082, https://doi.org/10.22323/1.397.0082

  24. Rare heavy-flavour decays, A. Boletti (on behalf of the ATLAS, CMS, and LHCb Collaborations), PoS(LHCP2021)139

  25. Comparison of Voxel S-values and Monte Carlo Simulation in [177Lu]Lu-DOTA-TATE Quantification for Patient-Specific Dosimetry, Rodrigues, C., Ferreira, P., Oliveira, F. P. M., Silva, Â., Peralta, L., Costa, D. C., Eur J Nucl Med Mol Imaging, 48 (2021) S75, https://doi.org/10.1007/s00259-021-05547-1

  26. Study of central exclusive production of top quark-antiquark pairs at LHC, M. Pisano, Nuovo Cimento 44C (2021) 66

  27. Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição, P. Assis, F. Assunção, A. Bakalova, U. Barres de Almeida, C. Roque Bom, J. Correia, A. De Angelis, L.O. Dias, B. Serrano González, A. Guillén, G. La Mura, N. Lourenço, P. Machado, S. Marques, L. Mendes, M. Pimenta, R. Shellard, B. Tomé and J. Vicha, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 707, https://doi.org/10.22323/1.395.0707

  28. Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 709, https://doi.org/10.22323/1.395.0709

  29. New methods to reconstruct Xmax and the energy of gamma-ray air showers with high accuracy in large wide-field observatories, R. Conceição, L. Peres, M. Pimenta and B. Tomé, Proceedings of 37th International Cosmic Ray Conference - PoS(ICRC2021) 395(2021) 711, https://doi.org/10.22323/1.395.0711

  30. Search for new physics in b→sℓ+ℓ− transitions at CMS, A. Boletti, on behalf of the CMS Collaboration, PoS(ICHEP2020)365

  31. The ATLAS Hardware Track Trigger performance studies for the HL-LHC, A. L. Moreira de Carvalho on behalf of the ATLAS Collaboration, PoS(LHCP2020)247

  32. Jet substructure modification probes the QGP resolution length, J. Casalderrey-Solana, G. Milhano, D. Pablos and K. Rajagopal, Nucl.Phys.A 1005 (2021) 121904, 10.1016/j.nuclphysa.2020.121904

  33. Impact of LHC jet data on Parton Distribution Functions, João Pires, PoS LHCP2020 (2020) 145, 10.22323/1.382.0145

  34. Gamma-ray Astrophysics in the MeV Range The ASTROGAM Concept and Beyond, A. De Angelis, V. Tatischeff, S. Brandt, A. Bulgarelli, R. Curado da Silva, I. Grenier, L. Hanlon, D. H. Hartmann, M. Hernanz, G. Kanbach, I. Kuvvetli, P. Laurent, M. Mariotti, M. N. Mazziotta, J. Mc Enery, A. Morselli, K. Nakazawa, M. Pearce, J. Rico, X. Wu, S. Zane, A. Zoglauer, Exp. Astron. 51 (2021) 1225-1254, 10.1007/s10686-021-09706-y

Conference Poster

  1. RODRIGO, A.P., GROSSO, A., MENDES, V.M., MANADAS, B., BATISTA, P.V., FERNANDES, A.R., COSTA, P.M. (2021). Unveiling venomous annelids by combining omics with ecological traits: The example of a phyllodocid. 12th European Conference on Marine Natural Products, Galway (Ireland), September 2021.

  2. Borges V. 2021 (23 March). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: Joint ECDC-WHO EURO virus characterisation working group meeting, World Health Organization (WHO) and European Centre for Disease Prevention and Control (ECDC)

  3. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. (2021). A study on whole-transcriptomes of two Polychaeta for discovering novel bioproducts with potential biotechnological applications. International Conference for YOUNG Marine Researchers. The Bremen Society for Natural Sciences, Berlin (Germany), September 2021.

  4. Integrated biochemical and computational approach reveals novel mechanisms underlying the antifungal activity of the milk-derived lactoferrin protein Cátia Santos-Pereira, María T. Andrés, Juliana F. Rocha, Henrique S. Fernandes, Susana R. Chaves, José F. Fierro, Hernâni Gerós, Stéphen Manon, Sérgio F. Sousa, Lígia R. Rodrigues, Manuela Côrte-Real XXI SPB National Congress of Biochemistry 14-16th Oct 2021, Évora, Portugal (online)

  5. Application of QM/MM methods for development of plastic degradation enzymes Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP) May 6th 2021, Porto, Portugal (online)

  6. Integrated in silico approach for the development of a new antipsychotic drug candidate to treat schizophrenia Rodrigo Andrade, Elina Marinho, Alba Iglesias, Jose Brea, Marián Castro, Filipe A. Almeida Paz, Filipe M. Areias, Maria I. Loza, Sérgio F. Sousa and M. Fernanda Proença Encontro de jovens investigadores da Universidade do Porto (IJUP) May 7th 2021, Porto, Portugal

  7. Borges V. 2021. (23 March). Título: “Add-value of SARS-CoV-2 minor variant analysis: some practical examples”. I-MOVE-COVID-19 annual meeting.

  8. Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho and Sérgio F. Sousa Encontro de jovens investigadores da Universidade do Porto (IJUP), May 7th 2021, Porto, Portugal

  9. Molecular Docking, Molecular Dynamics, and Free Energy Calculations for Identification of New Drugs Against Biofilm Formation in P.aeruginosa Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Hünfeld 2021: Workshop on Computer Simulation and Theory of Macromolecules April 23-24 2021 (online)

  10. Identification of Biofilm Formation Inhibitors in Pseudomonas aeruginosa through Virtual Screening, Molecular Dynamics, and Free Energy Calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online) Best Poster Communication

  11. Bioinformatic applications for the development of plastic degradation enzymes using QM/MM Jorge M. Cunha, Rita P. Magalhães, Henrique S. Fernandes, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  12. Development of a Structural Database of Insecticide Targets Maria F. Araújo, Tatiana F. Vieira, Elisabete M.S. Castanheira Coutinho, Sérgio F. Sousa X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  13. 3D Prediction of Non-B DNA Conformations Associated with MtDNA Genomic Instability André F. Pina, Sérgio F. Sousa, João Carneiro X Bioinformatics Open Days May 6th 2021, Braga, Portugal (online)

  14. In silico methodology for the identification of new drugs against biofilm formation in P. aeruginosa Tatiana F. Vieira, Rita P. Magalhães, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)

  15. Discovery of New Drugs Against Biofilm Formation in P.aeruginosa through Molecular Docking, Virtual Screening, Molecular Dynamics and MM/GBSA calculations Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa Affinity 2021: The 24th meeting of the International Society for Molecular Recognition 22-24 June 2021 (online)

  16. Elucidating the interaction of lactoferrin with V-ATPase towards understanding its mechanisms of action Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa. The 24th meeting of the International Society for Molecular Recognition, Affinity 2021, 22-24 June 2021 Note: Young investigator award

  17. A Multi-Level Computational Approach in the Discovery of New Quorum Sensing Inhibitors for P. aeruginosa Tatiana F. Vieira , Cristina Sousa, Sérgio F. Sousa Paul Ehrlich (PE) Euro-PhD Network virtual meeting, MedChem2021 26-28 July 2021 (online)

  18. Development of a Classification Model for the Identification of Targets to Known P.aeruginosa Biofilm Formation Inhibitors Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa Machine Learning in Quantum Physics and Chemistry Summer School 24 August to 3 September 2021, Warsaw, Poland Note: Award for 3rd Best Poster

  19. Specialized Multi-Level Computational Approach For The Identification of Novel Quorum Sensing Inhibitors Fábio G. Martins, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)

  20. Optimization of a Drug Discovery Computer Aided Workflow for Identification of P.aeruginosa Quorum-Sensing Inhibitors Rita P. Magalhães, Tatiana F. Vieira, André Melo, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexcel (online)

  21. The catalytic mechanism of Nitrilase 2: the role of the Cys-Glu-Lys catalytic triad Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa 18th European Symposium on Organic Reactivity (ESOR2021) 21-23 September 2021, Vrije Universiteit Amsterdam, The Netherlands (online)

  22. The Cys-Glu-Lys catalytic triad from the nitrilase superfamily: a QM/MM study on Nitrilase 2 Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa EMBO virtual Workshop Advances and challenges in biomolecular simulations 18-21 October 2021, Bioexel (virtual)

  23. Unveiling the catalytic mechanism of the Cys-Glu-Lys catalytic triads using the Nitrilase 2 as a case study Carla S. Silva Teixeira, Nuno M.F.S.A. Cerqueira, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) 7December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  24. Unraveling the Catalytic Mechanism of Threonine Aldolase, a potential biocatalyst for industrial application Juliana F. Rocha, Sérgio F. Sousa, Nuno M. F. S. A. Cerqueira FEBS 2021 Advanced Course - Computational Approaches to Understanding and Engineering Enzyme Catalysis October 19-22st 2021, Oulu, Finland (online) - Flash Talk

  25. The Catalytic Mechanism of the SARS-Cov-2 Main Protease Henrique S. Fernandes, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  26. Optimization of Classification Models for Identification of Ligand-Target Inhibition Pairs in Biofilm Formation in P.aeruginosa Rita P. Magalhães, Victor de la Oliva, João Carneiro, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  27. A computational study on the catalytic mechanism of Pdx2: a glutaminase containing the Cys-His-Glu triad André F. Pina, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  28. Specialized Multi-Level Computational Protocol for the Identification of Potential New Drugs Fábio G. Martins, Tatiana F. Vieira, Joel P. Moreira, Tiago Barbosa, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  29. Unraveling the catalytic mechanism of Threonine aldolase - a critical enzyme in the pharmaceutical industry Juliana F. Rocha, Sérgio F. Sousa, Nuno M.F.S.A. Cerqueira VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  30. Bridging the gap between lactoferrin and V-ATPase through a multi-stage computational approach Cátia Santos-Pereira, Juliana F. Rocha, Henrique S. Fernandes, Lígia R. Rodrigues, Manuela Côrte-Real, Sérgio F. Sousa VIII EJIBCE (Encontro de Jovens Investigadores de Biologia Computacional Estrutural) December 21st 2021, Faculdade de Ciências e Tecnologia da Universidade de Coimbra, Coimbra, Portugal

  31. Molecular detection of species from the Boraginaceae family to safeguard food and feed safety, integrity, authenticity, and quality Inês Carvalho Leonardo, Jorge Capelo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  32. The complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a food spoiler taint producing strain Inês Carvalho Leonardo, Maria Teresa Barreto Crespo, and Frédéric Bustos Gaspar November 2021 Microbiotec'21 - Congress of Microbiology and Biotechnology 2021

  33. Adaptation of SPARK to atmospheric-pressure micro-plasma jet flow conditions Duarte Gonçalves, João Santos Sousa, Stéphane Pasquiers, Mário Lino da Silva, Luís Lemos Alves PLATHINIUM 2021

  34. Sinval, J.; Vazquez, A.C.S.; Hutz, C.S.; Schaufeli, W.B.; Silva, S. Burnout Assessment Tool (BAT): Validity Evidence from Brazil and Portugal. Int. J. Environ. Res. Public Health 2022, 19, 1344. https://doi.org/10.3390/ijerph19031344

  35. Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaborations, ISMD2021 - International symposium on multiparticle dynamics

  36. Collective dynamics of heavy ion collisions in ATLAS, Helena Santos, on behalf of the ATLAS Collaboration, 50th International Symposium on Multiparticle Dynamics

  37. Evidence for local acceleration of heavy >10 MeV/n oxygen and sulphur in Jupiter's innermost radiation belts, Elias Roussos, Christina Cohen, Peter Kollmann, Marco Pinto, Patricia Gonçalves, Norbert Krupp, and Konstantinos Dialynas, Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-603

  38. Gamma/hadron discrimination using a small-WCD with four PMTs, R. Conceição et al., for the SWGO collaboration, 37th International Cosmic Ray Conference (Berlin)

  39. Modeling the radiobiological effects of gold nanoparticles in proton therapy of glioblastomas, J. Antunes, F. Mendes, A. Paulo and J. M. Sampaio, PANIC 2021, Particles and Nuclei International Conference

  40. Monitoring Gamma-Ray Burst VHE emission with the Southern Wide-field-of-view Gamma-ray Observatory, G. La Mura, U. Barres de Almeida, A. De Angelis, R. Conceição, F. Longo, M. Pimenta, E. Prandini, E. Ruiz-Velasco, B. Tomé on behalf of the SWGO Collaboration, 37th International Cosmic Ray Conference (Berlin)

  41. The BepiColombo Radiation Monitor, Pinto, M., Gonçalves, P., Cardoso, C., Sanchez-Cano, B., Moissl, R., Vainio, R., Oleynik, P., Huovelin, J., Korpela, S., Lehtolainen, A., Grande, M., and Marques, A., Europlanet Science Congress 2021, https://doi.org/10.5194/epsc2021-204

  42. Palestra/Webinar “Plantas ameaçadas de extinção - A Lista Vermelha da Flora Vascular de Portugal Continental”, por André Carapeto (Sociedade Portuguesa de Botânica), a 20 de Janeiro de 2021, integrada nas comemorações do Dia do Município de Vila do Bispo, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Vila do Bispo.

  43. Palestra/Webinar “A flora ameaçada no Município de Leiria”, por André Carapeto (Sociedade Portuguesa de Botânica), a 25 de Fevereiro de 2021, organizada pela Sociedade Portuguesa de Botânica em parceria com a Câmara Municipal de Leiria e o Centro de Interpretação Ambiental de Leiria.

Dataset

  1. MOUTINHO CABRAL, I., MADEIRA, C., GROSSO, A.R., COSTA, P.M. Comparative transcriptomics between two potential toxin-secreting marine annelids: Glycera alba and Hediste diversicolor. GenBank OL606744-OL606747 (embargo pending)
  2. Crispim Romao, Miguel; Castro, Nuno F.; Pedro, Rute; Simulated pp collisions at 13 TeV with 2 leptons + 1 b jet final state and selected benchmark Beyond the Standard Model signals. DOI: 10.5281/zenodo.5126747.

2020

Internationl Paper with refere

  1. Nogueira PJ, de Araújo Nobre M, Nicola PJ, Furtado C, Vaz Carneiro A. Excess Mortality Estimation During the COVID-19 Pandemic: Preliminary Data from Portugal. Acta Med Port [Internet]. 2020 Jun. 1 [cited 2023 Jan. 23];33(6):376-83. https://doi.org/10.20344/amp.13928

  2. Assunção, Hugo, et al. "University student engagement inventory (USEI): transcultural validity evidence across four continents." Frontiers in Psychology 10 (2020): 2796. https://doi.org/10.3389/fpsyg.2019.02796

  3. Sinval, Jorge, and João Marôco. "Short index of job satisfaction: Validity evidence from Portugal and Brazil." PLoS One 15.4 (2020): e0231474. https://doi.org/10.1371/journal.pone.0231474

  4. Marôco, João, et al. "Predictors of academic efficacy and dropout intention in university students: Can engagement suppress burnout?." PLoS One 15.10 (2020): e0239816. https://doi.org/10.1371/journal.pone.0239816

  5. Nogueira, Paulo Jorge, et al. "The role of health preconditions on COVID-19 deaths in Portugal: evidence from surveillance data of the first 20293 infection cases." Journal of Clinical Medicine 9.8 (2020): 2368. https://doi.org/10.3390/jcm9082368

  6. Manso J., Marcelino J., Caldeira L. (2018). Crushing and oedometer compression of rockfill using DEM. Computers and geotechnics - 101 (2018): 11-22.

  7. Manso J., Marcelino J., Caldeira L. (2019). Effect of the clump size for bonded particle model on the uniaxial and tensile strength ratio of rock. International Journal of Rock Mechanics and Mining Sciences - 114 (2019): 131-140.

  8. Manso J., Marcelino J., Caldeira L. (2020). Single-particle crushing strength under different relative humidity conditions. Acta Geotechnica (2020): 1-13.

  9. Borges et al, 2020 (Emerging Microbes and Infections); https://doi.org/10.1080/22221751.2020.1844552

  10. jorge Sinval et all. "Development of the Referee Shared Mental Models Measure (RSMMM)"Front. Psychol., 19 October 2020 | https://doi.org/10.3389/fpsyg.2020.550271

  11. jorge Sinval et all. "Measurement Invariance of the Burnout Assessment Tool (BAT) Across Seven C", Int. J. Environ. Res. Public Health 2020, 17(15), 5604; https://doi.org/10.3390/ijerph17155604 - 03 Aug 2020

  12. Joao Maroco et all. "Validation of the Portuguese version of the Community Assessment of Psychic Experiences and characterization of psychotic experiences in a Brazilian sample"Braz J Psychiatry. 2020 xxx-xxx;00(00):000-000 doi:10.1590/1516-4446-2019-0611

  13. Sílvia Monteiro, Leandro Almeida, Cristiano Gomes & Jorge Sinval (2020): Employability profiles of higher education graduates: a person-oriented approach, Studies in Higher Education, DOI: 10.1080/03075079.2020.1761785

  14. Vila-Cerqueira P, Mamede R, Silva M, Carriço JA, Ramirez, M. 2020. Chewie-NS: Enabling the use of gene-by-gene typing methods through a public and centralized service.(Oral presentation). Bioinformatic Open Days, Universidade do Minho, Braga, Portugal, 19-21 February.

  15. A. Nahon, A.B. Fortunato, A. Azevedo, F.S.B.F. Oliveira, J.N.C. Oliveira, J. Rogeiro, G. Jesus, A. Oliveira, P.A. Silva and P. Freire, 2020. Implementation and validation of an operational forecasting system for nearshore hydrodynamics with OPENCoastS. Atas das 6as Jornadas de Engenharia Hidrográfica / 1as Jornadas Luso-Espanholas de Hidrografia. 6.as Jornadas de Engenharia Hidrográfica / 1.as Jornadas Luso-Espanholas de Hidrografia, 03, 04 e 05 de novembro de 2020, 203-206, Instituto Hidrográfico, Lisboa.

  16. Orue-Echevarría, D., Castellanos, P., Sans, J., Emelianov, M., Vallés-Casanova, I., and Pelegrí, J. L. 2019. Temperature spatio-temporal correlation scales in the Brazil Malvinas Confluence from high-resolution in-situ and remote sensing data. Geophysical Research Letter. https://doi.org/10.1029/2019GL084246

  17. Cabral, S., Carvalho, F., Gaspar, M., Ramajal, J., Sá, E., Santos, C., Silva, G., Sousa, A., Costa, J.L., Chainho, P. 2019. Non-indigenous species in soft-sediments: Are some estuaries more invaded than others? Ecological Indicators. In press. https://doi.org/10.1016/j.ecolind.2019.105640

  18. Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044

  19. Ferreira, A., Garrido-Amador, P., Brito, A.C. (2019). Disentangling environmental drivers of phytoplankton biomass off Western Iberia. Frontiers in Marine Science, 6:44. https://doi.org/10.3389/fmars.2019.00044

  20. Brito, A.C., Garrido-Amador, P., Gameiro, C., Nogueira, M., Moita, M.T., Cabrita, M.T. (2020). Integrating in situ and ocean color data to evaluate ecological quality under the Water Framework Directive. Water, 12, 3443.

  21. Ferreira, A., Brotas, V., Palma, C., Borges, C., Brito, A.C. (in review). Assessing phytoplankton bloom phenology in upwelling-influenced regions using ocean colour remote sensing. Remote Sensing

  22. Sent, G., Biguino, B., Favareto, L., Cruz, J., Sá, C., Dogliotti, A., Brotas, V., Brito, A.C. (in review). Deriving water quality parameters using Sentinel-2 imagery: A case study in the Sado estuary, Portugal. Remote Sensing.

  23. Afonso, I., E. Berecibar, N. Castro, J.L. Costa, P. Frias, P. Moreira, P. Oliveira, F. Henriques, G. Silva & P. Chainho. (2020). Assessment of the colonization and dispersal success of non-indigenous species introduced in recreational marinas. Ecological Indicators 113: 106147. https://doi.org/10.1016/j.ecolind.2020.106147

  24. Vieira, S., P. Barrulas , P. Chainho C. Dias, K. Sroczyńska & H. Adão (accepted). Multi-element composition as a tool for spatial and temporal habitat discrimination of the non-indigenous clam Ruditapes philippinarum (Adam & Reeve, 1850) populations. Ecological Indicators.

  25. Monteiro, R.M., Domingos, I., Almeida, P.R., Costa, J.L., Alexandre, C.M., Quintella, B.R. 2020. Migration and escapement of silver eel males, Anguilla anguilla, from a southwestern European river. Ecology of Freshwater Fish, 29: 679-692. https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12545

  26. Santis, W., Castellanos, P., Campos, E. J. D. 2020. Memory effect within the Southern Atlantic Subtropical Dipole variability. Journal of Climate. Vol 33, nº 17. 7679-7696. DOI: 10.1175/JCLI-D-19-0745.1

  27. Orue-Echevarría, D., Pelegrí, J. L., Castellanos, P., Guallar, C., Marotta, H., Marrasé., Martín, J., Masdeu-Navarro, M., Paniagua, G.F., Peña Izquierdo, J., Puigdefábregas, J., Rodríguez-Fonseca, B., Roget, E., Rosell-Fieschi, M., Salat, J., Salvador, J., Vallés-Casanova, I., Vidal, M., Viúdez, A. 2020. Dataset on the RETRO-BMC cruise onboard the R/V Hespérides, April 2017, Brazil-Malvinas Confluence. Data in Brief Vol.30,105412. https://doi.org/10.1016/j.dib.2020.105412

  28. https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.101504

  29. https://journals.aps.org/prd/abstract/10.1103/PhysRevD.103.024020

  30. https://journals.aps.org/prd/abstract/10.1103/PhysRevD.102.124009

  31. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0239816

  32. https://www.frontiersin.org/articles/10.3389/fpsyg.2019.02796/full#fun1

  33. Pereira, C., Maranha, J. R. e Cardoso R. (2020). DEM analysis of some effects due to capillary forces in sands. E-Unsat 2020, Lisbon.

  34. Maria Adriana Cardoso, Maria Céu Almeida, Rita S. Brito, João L. Gomes, Paula Beceiro, Anabela Oliveira (2020). 1D/2D stormwater modelling to support urban flood risk management in estuarine areas: Hazard assessment in the Dafundo case study. Journal of Flood Risk Management, https://doi.org/10.1111/jfr3.12663, 13(3).

  35. Oliveira A, Fortunato AB, Rogeiro J., Teixeira J, Azevedo A, Lavaud L, Bertin A, Gomes J, David M, Pina J, Rodrigues M, Lopes P, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, 2020, Environmental Modelling & Software, 124, 104585

  36. F.J.A.L. Cruz and J.P.B. Mota, "Equilibrium and Transport Distributions of a DNA Dodecamer in Hydrophilic Nanopores", Materials Today: Proceedings 2020, 20, 249.

  37. P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2019). “RESCCUE RAF app – an IT solution for digital interactive urban resilience assessment”, 10th Iberian Grid Conference (IBERGRID), 23rd September 2019, Santiago de Compostela, Spain.

  38. P. Lopes, A. Oliveira, C. Pereira, R. S. Brito, M. A. Cardoso, R. Martins , M. David, J. Gomes, J. Pina (2020). “RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts” submitted to MIPRO 2020 – International Convention on Information, Communication and Electronic Technology, 28th September – 2nd October, Opatija, Croatia.

  39. Carapeto A., Francisco A., Pereira P., Porto M. (eds.). (2020). Lista Vermelha da Flora Vascular de Portugal Continental. Sociedade Portuguesa de Botânica, Associação Portuguesa de Ciência da Vegetação – PHYTOS e Instituto da Conservação da Natureza e das Florestas (coord.). Coleção «Botânica em Português», Volume 7. Lisboa: Imprensa Nacional, 374 pp.

  40. G. Aad et al. (ATLAS Collaboration), Search for resonances decaying into a weak vector boson and a Higgs boson in the fully hadronic final state produced in proton-proton collisions at $\sqrt{s}=13 TeV with the ATLAS detector. Phys. Rev. D 102, 112008 – Published 17 December 2020, https://doi.org/10.1103/PhysRevD.102.112008

  41. Y. Ito, T. Tochio, M. Yamashita, S. Fukushima, A. M. Vlaicu, J. P. Marques, J. M. Sampaio, M. Guerra, J. P. Santos, Ł. Syrocki, K. Słabkowska, E. Wȩder, M. Polasik, J. Rzadkiewicz, P. Indelicato, Y. Ménesguen, M.-Ch. Lépy, and F. Parente, Structure of $K{\ensuremath{\alpha}}{1,2}$- and $K{\ensuremath{\beta}}{1,3}$-emission x-ray spectra for Se, Y, and Zr. Phys. Rev. A 102, 052820 – Published 20 November 2020, http://dx.doi.org/10.1103/PhysRevA.102.052820

  42. Nuno Castro, José Alves, Raul Sarmento, Medida da atenuação de raios cósmicos num edifício, gazeta de Física, Volume 43, Fascículo 2, Pag 9

  43. L. Lopes, P.Assis, A. Blanco, P. Fonte, M. Pimenta, Towards sealed Resistive Plate Chambers, Journal of Instrumentation, Volume 15, November 2020, http://dx.doi.org/10.1088/1748-0221/15/11/C11009

  44. Sandra Soares, Joaquim Kessongo, Yoenls Bahu and Luis Peralta, Comparison of Radon Mass Exhalation Rate Measurements from Building Materials by two Different Methods, Radiation Protection Dosimetry (2020), Vol. 191, No. 2, pp. 255-259, http://dx.doi.org/https://doi.org/10.1093/rpd/ncaa163

  45. The Pierre Auger Collaboration, The Pierre Auger Observatory and its Upgrade, Science Reviews - from the end of the world (Argentina) Vol. 1, No. 4, September 2020 // pp. 8-33,

  46. I. Syndikus, M. Petri, A.O. Macchiavelli, et al., Probing the Z=6 spin-orbit shell gap with (p,2p) quasi-free scattering reactions, Phys. Lett. B 809, 135748 (2020), http://dx.doi.org/10.1016/j.physletb.2020.135748

  47. T. Aoyama, N. Asmussen, M. Benayoun, J. Bijnens, T. Blum et al., The anomalous magnetic moment of the muon in the Standard Model, Phys. Rept. 887 (2020) 1, http://dx.doi.org/https://doi.org/10.1016/j.physrep.2020.07.006

  48. G. Eichmann, C. S. Fischer, W. Heupel, N. Santowsky, P. C. Wallbott, Four-quark states from functional methods, Few Body Syst. 61 (2020) 4, 38, http://dx.doi.org/https://doi.org/10.1007/s00601-020-01571-3

  49. Nuno Castro, Mikael Chala, Ana Peixoto, Maria Ramos, Novel flavour-changing neutral currents in the top quark sector, JHEP 2020 (2020) 38, http://dx.doi.org/10.1007/JHEP10(2020)038

  50. B. Aharmim et al. (SNO Collaboration), A search for hep solar neutrinos and the diffuse supernova neutrino background using all three phases of the Sudbury Neutrino Observatory, Phys. Rev. D 102, 062006, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.062006

  51. P. C. Wallbott, G. Eichmann, C. S. Fischer, Disentangling different structures in heavy-light four-quark states, Phys. Rev. D 102 (2020) 5, 051501, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.051501

  52. A. Knyazev, J. Park, P. Golubev, et al., Tl concentration and its variation in a CsI(Tl) crystal for the CALIFA detector, Nucl. Instr. and Methods A 975, 164197 (2020), http://dx.doi.org/10.1016/j.nima.2020.164197

  53. J. M. Sampaio, M. Pinto, P. Gonçalves et al., Dose Measurements and Simulations of the RADFETs Response Onboard the Alphasat CTTB Experiments, IEEE Transactions on Nuclear Science, vol. 67, no. 9, pp. 2028-2033, Sept. 2020, http://dx.doi.org/10.1109/TNS.2020.3013035

  54. N. Santowsky, G. Eichmann, C. S. Fischer, P. C. Wallbott, R. Williams, Sigma-meson: Four-quark versus two-quark components and decay width in a Bethe-Salpeter approach, Phys. Rev. D 102 (2020) 5, 056014, https://arxiv.org/abs/2008.07630

  55. Felix Riehn, Ralph Engel, Anatoli Fedynitch, Thomas K. Gaisser, and Todor Stanev, The hadronic interaction model Sibyll 2.3d and extensive air showers, Phys.Rev.D 102 (2020) 6, 063002, http://dx.doi.org/https://doi.org/10.1103/PhysRevD.102.063002

  56. Mikael Chala, Paweł Kozów, Maria Ramos, Arsenii Titov, Effective field theory for vector-like leptons and its collider signals, Physics Letters B 809 (2020) 135752, http://dx.doi.org/10.1016/j.physletb.2020.135752

  57. ATLAS Collaboration (2941 authors), Performance of the ATLAS muon triggers in Run 2, J. Instrum. 15 (2020) P09015, http://dx.doi.org/10.1088/1748-0221/15/09/P09015

  58. Pierre Auger Collaboration (374 authors), Studies on the response of a water-Cherenkov detector of the Pierre Auger Observatory to atmospheric muons using an RPC hodoscope, J. Instrum. 15 (2020) P09002, http://dx.doi.org/10.1088/1748-0221/15/09/P09002

  59. DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume III. DUNE far detector technical coordination, Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08009

  60. DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume I. Introduction to DUNE., Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08008

  61. DUNE Collaboration, Deep Underground Neutrino Experiment (DUNE) Far Detector Technical Design Report. Volume IV. The DUNE far detector single-phase technology, Journal of Instrumentation, Volume 15, August 2020, http://dx.doi.org/10.1088/1748-0221/15/08/T08010

  62. D.S. Akerib et al., Search for two neutrino double electron capture of 124Xe and 126Xe in the full exposure of the LUX detector, J. Phys. G: Nucl. Part. Phys. 47 105105, https://arxiv.org/abs/1912.02742

  63. G La Mura, G Chiaro, R Conceição, A De Angelis, M Pimenta, B Tomé, Detection of very-high-energy gamma-ray transients with monitoring facilities, Monthly Notices of the Royal Astronomical Society, Volume 497, Issue 3, September 2020, Pages 3142-314, http://dx.doi.org/https://doi.org/10.1093/mnras/staa2141

  64. ATLAS Collaboration / CMS Collaboration (5203 authors), Combination of the W boson polarization measurements in top quark decays using ATLAS and CMS data at 8 TeV, J. High Energy Phys. 8 (2020) 051, http://dx.doi.org/10.1007/JHEP08(2020)051

  65. CMS and LHCb Collaborations, Combination of the ATLAS, CMS and LHCb results on the B0(s)->mu+mu- decays, http://cds.cern.ch/record/2727216

  66. M. Gallinaro et al., Higgs boson potential at colliders: Status and perspectives, Review in Physics 5 (2020) 100045, http://dx.doi.org/https://doi.org/10.1016/j.revip.2020.100045

  67. Joaquim Kessongo, Yoenls Bahu, Margarida Inacio, Luis Peralta, Sandra Soares, Radon concentration potential in Bibala municipality water: Consequences for public consumption. Radiat. Phys. Chem. 173 (2020) 108951, http://dx.doi.org/10.1016/j.radphyschem.2020.108951

  68. Soraia Elisio, Luis Peralta, Development of a low-cost monitor for radon detection in air, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 969 (2020) 164033, http://dx.doi.org/10.1016/j.nima.2020.164033

  69. M. Anderson et al. (SNO+ Collaboration), Measurement of neutron-proton capture in the SNO+ water phase, Phys. Rev. C 102, 014002, http://dx.doi.org/10.1103/PhysRevC.102.014002

  70. CMS Collaboration, Measurement of the CP-violating phase Phis in the B0s-> J/psiPhi(1020) ->mu+mu-K+K- channel in proton-proton collisions at 13 TeV, https://arxiv.org/abs/2007.02434

  71. L. Apolinário, J. Barata, J. G. Milhano, On the breaking of Casimir scaling in jet quenching, Eur. Phys. J. C 80, 586 (2020), http://dx.doi.org/10.1140/epjc/s10052-020-8133-1

  72. C. Andrés, L. Apolinário, F. Dominguez, Medium-induced gluon radiation with full resummation of multiple scatterings for realistic parton-medium interactions, JHEP 07 (2020) 114, http://dx.doi.org/10.1007/JHEP07(2020)114

  73. Avik Roy, Nikiforos Nikiforou, Nuno Castro, Timothy Andeen, Novel Interpretation Strategy for Searches of Singly Produced Vector-like Quarks at the LHC, Phys. Rev. D 101 (2020) 115027, http://dx.doi.org/10.1103/PhysRevD.101.115027

  74. P. Socha, M. Pinto, W. Hajdas and P. Gonçalves, Beam test results of a prototype of the Radiation Hard Electron Monitor to be flown in the JUICE mission, Journal of Instrumentation, Volume 15, June 2020 IPRD19, http://dx.doi.org/10.1088/1748-0221/15/06/C06032

  75. CMS Collaboration, Measurement of B0s and B+ meson yields in PbPb collisions at sqrt(sNN)=5.02 TeV, CMS-PAS-HIN-19-011, http://cds.cern.ch/record/2719500?ln=en

  76. M. Askins et al (incl. V. Lozza, N. Barros, J. Maneira, Theia: An advanced optical neutrino detector, Eur. Phys. J. C (2020) 80:416, http://dx.doi.org/https://doi.org/10.1140/epjc/s10052-020-7977-8

  77. J. Agarwala et al. (COMPASS Coll.), Contribution of exclusive diffractive processes to the measured azimuthal asymmetries in SIDIS, Nucl. Phys. B 956 (2020) 115039, http://dx.doi.org/https://doi.org/10.1016/j.nuclphysb.2020.115039

  78. CMS Collaboration (2286 authors), Measurement of properties of B(s)(0)s -> mu(+)mu(-) decays and search for B-0 -> mu(+)mu(-) with the CMS experiment, J. High Energy Phys. 4 (2020) 188, http://dx.doi.org/10.1007/JHEP04(2020)188

  79. CMS Collaboration (2284 authors), Constraints on the chi(c1) versus chi(c2) polarizations in proton-proton collisions at 8 TeV, Phys. Rev. Lett. 124 (2020) 162002, http://dx.doi.org/10.1103/PhysRevLett.124.162002

  80. M. Gallinaro et al., Timing performance of a Micro-Channel-Plate photomultiplier tube, Nucl. Instr. Meth. 960, 21 April 2020, 163592 (arXiv:1909.12604), http://dx.doi.org/10.1016/j.nima.2020.163592

  81. ATLAS Collaboration (2929 authors), ATLAS data quality operations and performance for 2015-2018 data-taking, J. Instrum. 15 (2020) P04003, http://dx.doi.org/10.1088/1748-0221/15/04/P04003

  82. M. Gallinaro et al., Deep diffused Avalanche photodiodes for charged particles timing, Nucl. Instr. Meth. 958 (2020) 162405 (arXiv:1903.07482), http://dx.doi.org/10.1016/j.nima.2019.162405

  83. Maura Barros, Nuno Filipe Castro, Johannes Erdmann, Gregor Gebner, Kevin Kroninger, Salvatore La Cagnina, Ana Peixoto, Study of interference effects in the search for flavour-changing neutral current interactions involving the top quark and a photon or a Z boson at the LHC, Eur. Phys. J. Plus 135 (2020) 339, http://dx.doi.org/10.1140/epjp/s13360-020-00346-3

  84. Pablo Orviz, Mário David, Jorge Gomes, Doina Cristina Duma, Elisabetta Ronchieri, Davide Salomoni, Software Quality Assurance in INDIGO-DataCloud Project: a Converging Evolution of Software Engineering Practices to Support European Research e-Infrastructures, J. Grid Comput. 18 (2020) 81-98, http://dx.doi.org/10.1007/s10723-020-09509-z

  85. LUX-ZEPLIN Collaboration (178 authors), Projected WIMP sensitivity of the LUX-ZEPLIN dark matter experiment, Phys. Rev. D 101 (2020) 052002, http://dx.doi.org/10.1103/PhysRevD.101.052002

  86. CMS Collaboration (2307 authors), Measurement of the top quark pair production cross section in dilepton final states containing one tau lepton in pp collisions at sqrt(s)=13 TeV, J. High Energy Phys. 2 (2020) 191, http://dx.doi.org/10.1007/JHEP02(2020)191

  87. M. Crispim Romao, N. F. Castro, R. Pedro, T. Vale, Transferability of Deep Learning Models in Searches for New Physics at Colliders, Phys. Rev. D 101 (2020) 035042, http://dx.doi.org/10.1103/PhysRevD.101.035042

  88. ATLAS Collaboration (2892 authors), Measurement of the azimuthal anisotropy of charged-particle production in Xe plus Xe collisions at root S-NN=5.44 TeV with the ATLAS detector, Phys. Rev. C 101 (2020) 024906, http://dx.doi.org/10.1103/PhysRevC.101.024906

  89. G. Strong, On the impact of selected modern deep-learning techniques to the performance and celerity of classification models in an experimental high-energy physics use case, 2020 Mach. Learn.: Sci. Technol. 1, 045006, https://doi.org/10.1088/2632-2153/ab983a

  90. A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, S.Bernardo, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, Environmental Modelling & Software, 2019, 104585, ISSN 1364-8152, http://dx.doi.org/10.1016/j.envsoft.2019.104585

  91. Álvaro López García; Jesus Marco, Marica Antonacci, Wolfgang zu Castell, Mario David, Marcus Hardt; Lara Lloret Iglesias; Viet Tran; Germán Moltó, Marcin Plociennik, Andy S Alic, Miguel Caballer, Isabel Campos Plasencia, Alessandro Costantini, Stefan Dlugolinsky, Doina Cristina Duma, Giacinto Donvito, Jorge Gomes, Ignacio Heredia, Keiichi Ito, Valentin Kozlov, Giang SCC Nguyen, Pablo Orviz Fernandez, Zdenek Sustr, Pawel Wolniewicz. A cloud-based framework for machine learning workloads and applications, http://dx.doi.org/10.1109/ACCESS.2020.2964386

  92. J. Casalderrey-Solana, G. Milhano, D. Pablos and K. Rajagopal, Modification of Jet Substructure in Heavy Ion Collisions as a Probe of the Resolution Length of Quark-Gluon Plasma, JHEP 2001 (2020) 044, http://dx.doi.org/10.1007/JHEP01(2020)044

  93. F. Domínguez, J. G. Milhano, C. A. Salgado, K. Tywoniuk, V. Vila, Mapping collinear in-medium parton splittings, Eur.Phys.J. C80 (2020) no.1, 11, http://dx.doi.org/10.1140/epjc/s10052-019-7563-0

  94. M. Gallinaro et al., Deep diffused APDs for charged particle timing applications: Performance after neutron irradiation, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 949 (2020) UNSP 162930, http://dx.doi.org/10.1016/j.nima.2019.162930

National paper

  1. Manso, J., Marcelino, J., Caldeira, L.. (2018a) – Estudo da evolução granulométrica em ensaios edométricos de enrocamento, com controlo de sucção. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018;
  2. Manso, J., Marcelino, J., Caldeira, L.. (2018b) – Discrete numerical modelling of the mechanical behaviour of rockfill in a oedometer test with suction control. Congresso Nacional de Geotecnia. Ponta Delgada, 27 a 30 de maio de 2018.
  3. Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia

Books

  1. Lista Vermelha da Flora Vascular de Portugal Continental – ISBN: 978-972-27-2870-6 - versão impressa
  2. Lista Vermelha da Flora Vascular de Portugal Continental - ISBN: 978-972-27-2876-8 - versão digital – disponível em dois sítios:
    • https://listavermelha-flora.pt/wp-content/uploads/2020/10/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf
    • http://spbotanica.pt/docs/Lista_Vermelha_Flora_Vascular_Portugal_Continental_2020_versao_digital.pdf

Journal Paper with indirect contribution (*)

Thesis / Dissertation

PhD Thesis

Finished

  1. Pereira, C. (2020). Formulation of an advanced effective stress based constitutive model for unsaturated soils. PhD Thesis, IST, Lisbon,
  2. Mendes, D. (2020). Modelling infra-gravity waves in coastal areas, Tese de Doutoramento em Engenharia Civil, IST.
  3. Giles Strong (2020). Deep Learning methods applied to Higgs physics at the LHC, PhD Thesis. Instituto Superior Tecnico.
  4. Oleksii Toldaiev (2020). Top quark physics and search for physics beyond the Standard Model at the Large Hadron Collider. PhD Thesis, Instituto Superior Tecnico.
  5. Ricardo Luz (2020). Development of the instrumentation and readout schemes of MARTA, an upgrade to the Pierre Auger Observatory. PhD Thesis, Instituto Superior Tecnico.
  6. João Marcos (2020). Real-time statistical event reconstruction for medical scintillation cameras. PhD Thesis, University of Coimbra.
  7. Miguel Moita (2020). ASTROGAM Space Gamma-ray Telescope Main Instrument Development, Doctoral program in Applied Physics and Physical Engineering, University of Coimbra.

Ongoing

  1. Manso J. (2017). Predicting the behaviour of rockfill embankments. Instituto Superior Técnico Universidade de Lisboa.
  2. Luís Borges-Araújo Institute for Bioengineering and Biosciences, Instituto Superior Técnico: PD/BD/137492/2018
  3. Mariana de Oliveira Farinha Fidalgo Valério Universidade Nova de Lisboa / Instituto de Tecnologia e Química Biológica: SFRH/BD/148542/2019
  4. PhD thesis de Paulo Santos (LASIGE/FCUL) (https://www.lasige.pt/member/paulo-santos)
  5. PhD thesis de Guilherme Espada (LASIGE/FCUL) (https://www.lasige.pt/member/guilherme-espada)
  6. João Pedro Pino Gonçalves "Collider, neutrino and dark relics of Grand Unification with Deep Learning" Universidade de Aveiro.
  7. Ana Patrícia Teixeira Pontes "The genomics of microbe domestication – testing the hypothesis of secondary domestication events in Saccharomyces cerevisiae. Programa Doutoral em Biologia FCT-UNL: SFRH/BD/136462/2018
  8. Biology and ecology of allis shad in Portugal: contributions of fluvial restoration and participated management to its conservation. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/123434/2016)
  9. Catadromous migration of the Thinlip grey mullet (Liza ramada Risso, 1827) and its importance to fluvial ecosystems. PhD Thesis, Universidade de Évora (Bolsa FCT referência SFRH/BD/121042/2016)
  10. Alberto de Albuquerque Cezar Junior "On deep learning analysis of new physics at the LHC. Tese de Doutorado" Universidade Federal da Paraíba parceria com a Universidade de Aveiro
  11. Water quality indexes for Estuarine Waters: assessment of temporal and spatial variability. PhD Thesis, Universidade de Lisboa (EARTHSYSTEMS FCT – Programa Doutoral – PD/BD/135064/2017)
  12. Evaluating the design and size adequacy of a Marine Protected Area to promote small-scale artisanal fisheries management. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (Bolsa FCT referência SFRH/BD/131868/2017)
  13. Assessment of anthropogenic impacts on the European Eel in Portugal. PhD Thesis, Universidade de Lisboa, Faculdade de Ciências (EARTHSYSTEMS FCT – Programa Doutoral - PD/143/2012) RuiMonteiro
  14. Phytoplankton response to climate change on the North Atlantic and Southern Ocean. PhD Thesis. Universidade de Lisboa. (FCT- SFRH/BD/144586/2019)
  15. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. MSc Thesis in Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências
  16. Bio-optical properties of Portuguese coastal waters with emphasis on the detection of Functional Types of Phytoplankton. PhD Thesis, Universidade de Lisboa (Bolsa CNPq referência 200589/2019-9)

Master Thesis

Finished

  1. Automatic conversion of ADA source code to scala, Espada, Guilherme Jorge Nunes Monteiro (https://repositorio.ul.pt/handle/10451/48217)
  2. Bayesian approach to Ecological Monitoring data: Latent Growth Curve Models. Mestrado em Bioestatística, Universidade de Lisboa, Faculdade de Ciências.
  3. Empowering Antibiotic Polymers Design through Coarse Grained Molecular Dynamics url
  4. Tiago Correia "Searching for new physics in the era of Deep Learning and Quantum Supremacy" Universidade de Aveiro. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  5. MSc thesis de Máximo Oliveira (LASIGE/FCUL)
  6. Rita Afonso Population genomics of the endangered seabird Bermuda Petrel (Pterodroma cahow). Mestrado em Biologia Evolutiva e do Desenvolvimento, Faculdade de Ciências, Universidade de Lisboa
  7. Luis Coelho (2020), Study of the CP nature of the top-Higgs coupling in ttH events at the LHC, MSc Thesis in Physics, University of Coimbra, Faculty of Sciences
  8. Joana Mingacho (2020), Terrestrial Gamma-ray Flashes analysis for Aircraft Transport Safety, Master in Engineering physics, University of Coimbra, Faculty of Sciences
  9. Joana Antunes, Simulations of radiosensitization efficacy of nanoparticles in proton therapy, Mestrado Integrado em Engenharia Biomédica e Biofísica, Universidade de Lisboa, Faculdade de Ciências.
  10. Maura Teixeira, Search for Dark Matter in Monotop Events at the Large Hadron Collider, Master in Physics, University of Minho
  11. Jacinto Fonseca, Detection of Magnetic Inelastic Dark Matter, Master in Physics, University of Coimbra
  12. Matteo Magherini, Vector Boson Scattering with a tau lepton in the final state in proton-proton collisions at the Large Hadron Collider, MSc Univ. of Perugia
  13. Ricardo Barrué, Study of the ATLAS sensibility to anomalous Spin/CP components in the HWW vertex, MSc in Physics Engineering, IST

ongoing

  1. Monitorização da população do Roaz-corvineiro (Tursiops truncatus) do estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências.

Conference Paper

  1. "A mosaic thiamine biosynthetic pathway in yeasts reconstructed by multiple horizontal gene transfers" Orador: Carla Gonçalves, European congress on fungal genetics, Roma 2020
  2. P. Lopes; A. Oliveira; C. Pereira; R. S. Brito; M. A. Cardoso; R. Martins; M. David; J. Gomes; J. Pina et al., "RESCCUE RAF App – Using Technology to Mitigate Climate Change Urban Impacts," 2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO), Opatija, Croatia, 2020, pp. 1651-1655, doi: 10.23919/MIPRO48935.2020.9245231.
  3. CAMPUZANO F., SOBRINHO J., RODRIGUES M., NUNES S., CASTELLANOS P., ALMADA F., FERNANDES C.S., PASCOAL A., NEVES R., OLIVEIRA A., OLIVEIRA A., BROTAS V. (2020). Desenvolvimento dum observatório costeiro para a Área Metropolitana de Lisboa. 6as Jornadas de Engenharia Hidrográfica/1as Jornadas Luso-Espanholas de Hidrografia, 408-411
  4. Manso, J., Marcelino, J., Caldeira, L.. (2018) – Settlement Analysis of the Montesinho CFRD. Third International DAM WORLD Conference – DAMWORLD 2018, Foz do Iguaçu, Brasil, 17 e 21 de setembro de 2018.
  5. Manso, J., Marcelino, J., Caldeira, L.. (2019) "Settlement analysis of the Montesinho concrete-face rockfill dam", XVII European Conference on Soil Mechanics and Geotechnical Engineering – XVII ECSMGE-2019, Reykjavík, Islândia, 1 a 7 de setembro de 2019.
  6. Manso, J., Marcelino, J., Caldeira, L.. (2020) "Yielding of rockfill in triaxial experiments", DAM WORLD Webinar, evento online, emitido a partir de Lisboa, 22 a 24 de setembro de 2020.
  7. R. Pedro, Operation and Performance of the ATLAS Tile Calorimeter, J. Phys.: Conf. Ser. 1690 012045
  8. B. Pereira on behalf of the ATLAS Collaboration, Radiation hardness of the atlas tile calorimeter optical components, J. Phys.: Conf. Ser. 1690 012053
  9. Laura Sargsyan and Filipe Martins, Evaluation of a new visualization and analytics solution for slow control data for large scale experiments, EPJ Web of Conferences 245, 07001 (2020), https://doi.org/10.1051/epjconf/202024507001
  10. L. Apolinário, Time evolution of a medium-modified jet, PoS EPS-HEP2019 (2020) 296, http://dx.doi.org/10.22323/1.364.0296
  11. Helena Santos, Jet Production in Heavy Ion Collisions with the ATLAS Experiment, PoS 2020, vol. 364, p. 286, https://pos.sissa.it/364/286/
  12. P.Lopes, A.Oliveira, C.Pereira, R.S.Brito, M.A.Cardoso, R.Martins, M.David, J.Gomes, J.Pina, RESCCUE RAF App - Using Technology to Mitigate Climate Change Urban Impacts, Mipro2020, ISSN 1847-3946, pp 1959-1963
  13. M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Europlanet Science Congress 2020, online, 21 September-9 Oct 2020, EPSC2020-311, 2020, http://dx.doi.org/10.5194/epsc2020-311
  14. G. Strong et al., Muon Energy Measurement from Radiative Losses in a Calorimeter for a Collider Detector, https://arxiv.org/abs/2008.10958
  15. Shoaib Sufi et.al, Report on the Workshop on Sustainable Software Sustainability 2019 (WOSSS19), http://dx.doi.org/10.5281/zenodo.3922155
  16. M. Gallinaro et al., Precise timing with the PICOSEC-Micromegas detector, Nuovo Cim. C 43 (2020) 1, https://doi.org/10.1393/ncc/i2020-20013-8
  17. M. Gallinaro et al., Beyond the Standard Model in Vector Boson Scattering signatures, https://arxiv.org/abs/2005.09889
  18. M. Gallinaro et al., Single photoelectron time resolution studies of the PICOSEC-Micromegas detector, JINST 15(2020) 04, C04053, https://doi.org/10.1088/1748-0221/15/04/C04053
  19. Agostinho Gomes, Jose Augusto, Filipe Cuim, Guiomar Evans, Rui Fernandez, Luis Gurriana, Filipe Martins, Upgrade of the ATLAS Tile Calorimeter High Voltage System, ATL-TILECAL-PROC-2019-008, PoS 370-062, http://dx.doi.org/10.22323/1.370.0062
  20. G. Strong, HiggsML Lumin Code: supporting arXiv:2002.01427, https://doi.org/10.5281/zenodo.3754669
  21. M. Gallinaro et al., Progress on the PICOSEC-Micromegas Detector Development: Towards a precise timing, radiation hard, large-scale particle detector with segmented readout, Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc. Equip. 958 (2020) 162877, http://dx.doi.org/10.1016/j.nima.2019.162877
  22. V. Lozza for the SNO+ Collaboration, Backgrounds Analysis for the SNO+ Experiment, Proceedings of TAUP 2019, to be published in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/1468/1/012135

Conference Poster

  1. RODRIGUES M., MARTINS R., ROGEIRO J., OLIVEIRA A., FORTUNATO A.B., AZEVEDO A., FREIRE P., CRAVO A., JACOB J., ROSA A. (2020). The UBEST observatory: an innovative HPC-based portal for water quality management in coastal regions. EOSC week 2020, 1pp.
  2. Borges V. 2020 (20 May). Título: “INSaFLU: open web-based bioinformatics suite for genome-based surveillance of influenza virus and other pathogens, such as SARS-CoV-2”; Encontro: ECDC COVID-19 Laboratory Networks Influenza, European Centre for Disease Prevention and Control (ECDC)
  3. Borges and Isidro, 2020 (10 October). Genetic diversity of the novel coronavirus SARS-CoV-2 (COVID-19) in Portugal; XV CICS-UBI Symposium CICS-UBI.
  4. Manso, J., Marcelino, J., Caldeira, L.. (2020) – Estudo da fluência e da relaxação de enrocamentos em ensaios edométricos. Congresso Nacional de Geotecnia. LNEC, 3 a 6 de maio de 2020 (adiado).
  5. Palestra/Webinar «A flora ameaçada de Portugal continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 8 de Maio de 2020, integrada no «BioLousada em Casa», organizado pela Câmara Municipal de Lousada.
  6. Palestra/Webinar «A flora ameaçada de Portugal continental», por Paulo Pereira (Sociedade Portuguesa de Botânica), a 5 de Outubro de 2020, integrada no Festival de Observação de Aves & Actividades de Natureza/Festival Bird Watching, em Sagres, organizado pela Sociedade Portuguesa para o Estudo das Aves, pela Câmara Municipal de Vila do Bispo e pela Associação Almargem.
  7. Comunicação «Apresentação da publicação ‘Lista Vermelha da Flora Vascular de Portugal Continental’ e considerações finais», por Ana Francisco (Sociedade Portuguesa de Botânica), a 13 de Outubro de 2020, integrada na Conferência Pública «Plantas em Risco de Extinção: A Lista Vermelha da Flora Vascular de Portugal Continental», realizada na Fundação Calouste Gulbenkian (auditório 2), em Lisboa, organizada pela Sociedade Portuguesa de Botânica.
  8. URL da comunicação: https://listavermelha-flora.pt/wp-content/uploads/2020/11/07_PDF_AnaFrancisco.pdf
  9. Logótipo da INCD apresentado no slide 21 da comunicação.
  10. Palestra/Webinar «Lista Vermelha da Flora Vascular de Portugal Continental», por André Carapeto (Sociedade Portuguesa de Botânica), a 4 de Novembro de 2020, para a turma do 10ª ano da Escola Secundária Pedro Nunes, em Lisboa.
  11. P. Figueiredo, G. Lage, P. Conde Muíño, R. Pedro, Investigando as interações entre o bosão de Higgs e o W com ATLAS Open Data, Conferência Nacional de Física (Física 2020), Lisboa
  12. Carolina Costa, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferência Nacional de Física (Física 2020), Lisboa
  13. Rita Silva, AMBER Experiment at CERN, Jornadas LIP, Braga, Portugal
  14. A.S. Alic, M. Antonacci, M. Caballer, I. Campos, A. Costantini, M. David, S. Dlugolinsky, G. Donvito, C. Duma, J. Gomes, M. Hardt, I. Heredia, L. Hluchy, K. Ito, V. Kozlov, L. Lloret, A. López García, J. Marco, L. Matyska, G. Moltó, G. Nguyen, P. Orviz, M. Plociennik, Z. Šustr, V. Tran, P. Wolniewicz, W. zu Castell, DEEP framework for deep learning, ISC High Performance 2020, Frankfurt
  15. Susana Santos, Determination of the Higgs CP properties in hadron colliders, Jornadas LIP, Braga, Portugal
  16. Rute Pedro, Machine Learning in the Search for New Physics Phenomena at the LHC, Jornadas do LIP, Braga, Universidade do Minho
  17. M. Moita, N. Auricchio, E. Caroli, R. M. Curado da Silva, G. De Cesare, S. Del Sordo, J. M. Maia, J. Stephen, E. Virgilli, Monte Carlo study of a 3D CZT Spectroscopic-imager for Scattering Polarimetry, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
  18. Ana Peixoto, Novel flavour-changing neutral currents in the top quark sector, Poster session at the TOP2020 international conference
  19. Luís Sintra, Luísa Arruda, Patrícia Gonçalves, Particle Energy Spectra Reconstruction of the MFS Data using Machine Learning Techniques, Jornadas Científicas LIP 2020, Universidade do Minho, Braga
  20. M. Moita, R. M. Curado da Silva, J. M. Maia, G. Salgado, G. Canezin, C. Kierans, R. Caputo, J. E. McEnery, Polarimetric Potential of AMEGO-X Mission Proposal, XXX Encontro Nacional de Astronomia e Astrofísica, Instituto de Astrofísica e Ciências do Espaço, Porto
  21. Miguel Moita, Polarimetric Potential of AMEGO-X Mission Proposal, 27th International Symposium On Room-temperature Semiconductor Detectors / IEEE NSS RTSD MIC Conference 2020, Boston, USA
  22. Emanuel Gouveia, Probing the CP nature of the Higgs coupling to top quarks with the ATLAS experiment, LIP Jornadas, Braga, Universidade do Minho
  23. Diogo de Bastos, Prospects at the High-Luminosity LHC with the CMS experiment, Particle physics for the future of Europe, IST, Lisbon
  24. B. Pereira, Radiation hardness of the atlas tile calorimeter optical components, ICPPA 2020, Virtual World - Moscow
  25. Coelho, Luis Felipe and Goncalo, R. and Gouveia, E. D. and Moreira De Carvalho, A. L. and Onofre, A., Search for CP-odd ttH production in the H -> bb decay channel, 6th IDPASC/LIP PhD Students Workshop, Portugal
  26. Luis Coelho, Search for CP-odd ttH production in the H->bb decay channel with ATLAS, 6th IDPASC PhD students workshop,
  27. Ana Peixoto, Search for Flavour Changing Neutral Currents interactions in the tZq vertex with the ATLAS Experiment at 13 TeV, LIP Jornadas 2020, Braga, Universidade do Minho
  28. Tiago Vale, Search for vector-like quarks with the ATLAS Experiment, LIP Jornadas, Braga, Universidade do Minho
  29. C. Costa, R. Barrué, P. Conde Muíño, Sensitivity of the ATLAS experiment to anomalous interactions between the Higgs and W bosons, Conferencia Nacional de Física (Física 2020)
  30. Ricardo Barrué, Sensitivity to anomalous HWW couplings at ATLAS, LIP Jornadas, Braga, Universidade do Minho
  31. N.Leonardo, S. Fonseca, E. Melo, A.Jales, T.Gaehtgens, Study of the efficiency of muon identification algorithm with Tag and Probe method using CMS Open Data, Fisica 2000
  32. Ana Carvalho, Ricardo Gonçalo, Patricia Conde, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, 8th Conference of Large Hadron Collider Physics
  33. Ana Luísa Moreira de Carvalho, The ATLAS Hardware Track Trigger performance studies for the HL-LHC, LHCP 2020
  34. M. Pinto, P. Gonçalves et al., The RADiation hard Electron Monitor (RADEM) for the JUICE mission, Outer planet moon - magnetosphere interaction workshop
  35. S. Andringa, A. Blanco, P. Dobrilla, R. Gonçalo, D. Gonçalves, G. Gouveia, L. Lopes, J. Pereira, Um dispositivo móvel baseado em RPCs para tomografia de muoes, FÍSICA 2020 - 22ª Conferência Nacional de Física,
  36. A. Blanco, P. Fonte, L. Lopes, E. Neves, J. Saraiva e M. Veiga, Um novo detetor de tempo de voo para a experiência HADES, FÍSICA 2020 - 22ª Conferência Nacional de Física
  37. Sara Mesquita, Lília Perfeito and Joana Gonçalves de Sá, Using pandemic periods to improve now-casting models based on search engine data, Complex Networks 2020, Madrid

Datasets

  1. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE143954

2019

Journal Paper with direct contribution

  1. A. Oliveira, A.B. Fortunato, J. Rogeiro, J. Teixeira, A. Azevedo, L. Lavaud, X. Bertin, J. Gomes, M. David, J. Pina, M. Rodrigues, P. Lopes, OPENCoastS: An open-access service for the automatic generation of coastal forecast systems, Environmental Modelling & Software, 2019, 104585,ISSN 1364-8152, https://doi.org/10.1016/j.envsoft.2019.104585.
  2. Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins, Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
  3. F.J.A.L. Cruz, Saman Alavi, J.P.B. Mota, "Low-temperature Thermodynamic Study of the Metastable Empty Clathrate Hydrates using Molecular Simulations", ACS. Earth Space Chem. 3 (2019) 789
  4. Oliveira A.; Rodrigues, M.; Rogeiro, J.; Fortunato, A. B.; Teixeira, J.; Azevedo, A.; Lopes, P. (2019) OPENCoastS: An Open-Access App for Sharing Coastal Prediction Information for Management and Recreation. In: Rodrigues J. et al. (eds) Computational Science – ICCS 2019. ICCS 2019. Lecture Notes in Computer Science, vol 11540. Springer, https://doi.org/10.1007/978-3-030-04849-5_44
  5. Anabela Oliveira, André Fortunato, João Rogeiro, Joana Teixeira, Alberto Azevedo, Laura Lavaud, Xavier Bertin, Jorge Humberto Lúcio Oliveira Gomes, Mario David, Joao Pina, Marta Rodrigues, Pedro Lopes (2019) OPENCoastS: an open-access service for the automatic generation of coastal forecast systems. In: ENVSOFT_2019_458 _R1 (Accepted, Ready for Decision)
  6. Automatic Design of Artificial Neural Networks for Gamma-Ray Detection Filipe Assunção, João Correia, Rúben Conceição, Mário Pimenta, Bernardo Tomé, Nuno Lourenço, Penousal Machado IEEE Access, Vol 7 (2019) 110531 10.1109/ACCESS.2019.2933947
  7. Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Barros, Maneira, Prior Phys. Rev. D 99, 032013 10.1103/PhysRevD.99.032013
  8. Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto Accepted for publication on IEEE Transactions on Nuclear Science on 04 Oct 2018, 10.1109/TNS.2019.2900398 10.1109/TNS.2019.2900398
  9. Gravitational wave and collider probes of extended Higgs sectors with a low cutoff Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP) Eur. Phys. J. C (2019) 79: 156 10.1140/epjc/s10052-019-6655-1
  10. Search for invisible modes of nucleon decay in water with the SNO+ detector M. Anderson et al. (The SNO+ Collaboration) Phys. Rev. D 99, 032008 10.1103/PhysRevD.99.032008
  11. GUIMesh: a tool to import STEP geometries into Geant4 via GDML M. Pinto, P. Gonçalves accepted for publication on Computer Physics Communications, 10.1016/j.cpc.2019.01.024 10.1016/j.cpc.2019.01.024
  12. β decay of 133 In : γ emission from neutron-unbound states in 133 Sn M. Piersa, et al. Phys. Rev. C 99, 024304 (2019) 10.1103/PhysRevC.99.024304
  13. Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds M. Anderson et al. (SNO+ Collaboration) Phys. Rev. D 99, 012012 (2019) 10.1103/PhysRevD.99.012012
  14. Boron-10 lined RPCs for sub-millimeter resolution thermal neutron detectors: Feasibility study in a thermal neutron beam L.M.S. Margato, A. Morozov, A. Blanco, P. Fonte, F.A.F. Fraga, B. Guerard, R. Hall-Wilton, C. Höglunde, A. Mangiarotti, L. Robinson, S. Schmidt and K. Zeitelhack 2019 JINST 14 P01017 10.1088/1748-0221/14/01/P01017
  15. Search for vector-boson resonances decaying to a top quark and bottom quark in the lepton plus jets final state in $pp$ collisions at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B788 (2019) 347-370 10.1016/j.physletb.2018.11.032
  16. Measurement of the Gamma Ray Background in the Davis Cavern at the Sanford Underground Research Facility, D. Akerib et al, Astroparticle Physics Volume 116, 2020, 102391, 10.1016/j.astropartphys.2019.102391
  17. Hadronic interaction model sibyll 2.3 c and inclusive lepton fluxes, Anatoli Fedynitch, Felix Riehn, Ralph Engel, Thomas K. Gaisser, and Todor Stanev, Phys. Rev. D 100, 103018, 10.1103/PhysRevD.100.103018
  18. Role of the t(t)over-barh rest frame in direct top-quark Yukawa coupling measurements, Andrea Ferroglia, Miguel C. N. Fiolhais, Emanuel Gouveia, and António Onofre, Phys. Rev. D 100, 075034, 10.1103/PhysRevD.100.075034
  19. Calculations for deep inelastic scattering using fast interpolation grid techniques at NNLO in QCD and the extraction of alpha_s from HERA data, D. Britzger, J. Currie, A. Gehrmann-De Ridder, T. Gehrmann, E.W.N. Glover, C. Gwenlan, A. Huss, T. Morgan, J. Niehues, J. Pires, K. Rabbertz, M.R. Sutton, Eur.Phys.J. C79 (2019) no.10, 845, 10.1140/epjc/s10052-019-7351-x
  20. Beam test results of the RADEM Engineering Model, M.Pinto, P. Gonçalves, P. Socha, W. Hajdas, A. Marques, J.Costa Pinto, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 10.1016/j.nima.2019.162795
  21. Dark Matter Benchmark Models for Early LHC Run-2 Searches: Report of the ATLAS/CMS Dark Matter Forum, D. Abercrombie et al. Phys. Dark Univ. 27 (2020) 100371, 10.1016/j.dark.2019.100371
  22. Measurement of B-s(0) meson production in pp and PbPb collisions at root S-NN=5.02 TeV, CMS Collaboration (2263 authors), Phys. Lett. B 796 (2019) 168-190, 10.1016/j.physletb.2019.07.014
  23. Differential Dijet Cross Section at the LHC, Aude Gehrmann-De Ridder, Thomas Gehrmann, E.W.N. Glover, Alexander Huss, Joao Pires, Phys. Rev. Lett. 123, 102001 (2019), 10.1103/PhysRevLett.123.102001
  24. Improved measurements of the β -decay response of liquid xenon with the LUX detector, D Akerib et al, Phys. Rev. D 100, 022002, 2019, 10.1103/PhysRevD.100.022002
  25. Long term experience in Autonomous Stations and production quality control, L. Lopes, A. B. Alves, P. Assis, A. Blanco, N. Carolino, M. A. Cerda, R. Conceição, O. Cunha, C. Dobrigkeit, M. Ferreira, P. Fonte, L. de Almeida, R. Luz, V. B. Martins, L. Mendes, J. C. Nogueira, A. Pereira, M. Pimenta, R. Sarmento, V. de Souza, B. Tomé, J. Instrum. 14 (2019) C07002, 10.1088/1748-0221/14/07/C07002
  26. Numerical modeling of cosmic-ray transport in the heliopshere and interpretation of proton and helium fluxes in Solar Cycle 24, N. Tomassetti, F. Barao, B. Bertucci, E. Fiandrini, M. Orcinha, Advances in Cosmic-Ray Astrophysics and Related Areas, Volume 64, Issue 12, (2019), 10.1016/j.asr.2019.06.025
  27. Transverse extension of partons in the proton probed in the sea-quark range by measuring the DVCS cross section, COMPASS Collaboration (225 authors), Phys.Lett.B 793 (2019) 188-194, 10.1016/j.physletb.2019.04.038
  28. Measurement of the average shape of longitudinal profiles of cosmic ray air-showers at the Pierre Auger Observatory, The Pierre Auger Collaboration, A. Aab et al, J. Cosmol. Astropart. Phys. 3 (2019) 018, 10.1088/1475-7516/2019/03/018
  29. Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons, COMPASS Collaboration (205 authors), Nucl. Phys. B 940 (2019) 34-53, 10.1016/j.nuclphysb.2018.12.024
  30. PICOSEC-Micromegas: Robustness measurements and study of different photocathode materials, M. Gallinaro et al., J.Phys.Conf.Ser. 1312 (2019) no.1, 012012
  31. Constraints on Neutrino Lifetime from the Sudbury Neutrino Observatory, B. Aharmim et al. (SNO Collaboration), Phys. Rev. D 99, 032013 (2019), 10.1103/PhysRevD.99.032013
  32. Development of a Directionality Detector for RADEM, the Radiation Hard Electron Monitor aboard the JUICE Mission, M. Pinto, P. Gonçalves, W. Hadjas, A. Marques , J. Costa Pinto, IEEE Transactions on Nuclear Science Volume: 66 Issue: 7 ,1770 - 1777, 10.1109/TNS.2019.2900398
  33. Compton polarimetry with a multi-layer CdTe focal plane prototype, M. Moita, E. Caroli, J.M. Maia, R.M. Curado da Silva, N. Auricchio, J.B. Stephen, M. Páscoa, A.M.F. Trindade, Nucl. Instr. Meth. A, Vol. 918, 2019, pp. 93-98, 10.1016/j.nima.2018.10.192
  34. Gravitational wave and collider probes of extended Higgs sectors with a low cutoff, Mikael Chala (Durham U., IPPP), Maria Ramos (LIP, Minho), Michael Spannowsky (Durham U., IPPP), Eur. Phys. J. C (2019) 79: 156, 10.1140/epjc/s10052-019-6655-1
  35. Search for invisible modes of nucleon decay in water with the SNO+ detector, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 032008 (2019), 10.1103/PhysRevD.99.032008
  36. GUIMesh: a tool to import STEP geometries into Geant4 via GDML, M. Pinto, P. Gonçalves, Computer Physics Communications, Volume 239, June 2019, Pages 150-156,10.1016/j.cpc.2019.01.024
  37. Measurement of the 8B solar neutrino flux in SNO+ with very low backgrounds, M. Anderson et al. (SNO+ Collaboration), Phys. Rev. D 99, 012012 (2019), 10.1103/PhysRevD.99.012012
  38. Measurement of proton induced gamma-ray emission cross sections on Na from 1.0 to 4.1 MeV, M. Chiari, et al., Nucl. Instr. and Meth. in Phys. B 441, 108 (2019), 10.1016/j.nimb.2017.01.043
  39. Properties of the CsI(Tl) detector elements of the CALIFA detector A. Knyazev, et al., Nucl. Instr. and Meth. in Phys. A 940, 393 (2019) 10.1016/j.nima.2019.06.045
  40. Measurement of neutron production in atmospheric neutrino interactions at the Sudbury Neutrino Observatory SNO Collaboration Phys. Rev. D 99, 112007 (2019) 10.1103/PhysRevD.99.112007
  41. Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
  42. Tests of Lorentz invariance at the Sudbury Neutrino Observatory SNO collaboration Phys.Rev. D98 (2018) 112013 10.1103/PhysRevD.98.112013
  43. Tests of Lorentz invariance at the Sudbury Neutrino Observatory B. Aharmim et al. (SNO Collaboration) Phys. Rev. D 98, 112013 10.1103/PhysRevD.98.112013
  44. Measurement of differential cross sections for Z boson pair production in association with jets at $sqrt{s} =$ 8 and 13 TeV CMS collaboration (2303 authors) Phys.Lett. B789 (2019) 19-44 10.1016/j.physletb.2018.11.007
  45. Correlated long-range mixed-harmonic fluctuations measured in $pp$, $p$+Pb and low-multiplicity Pb+Pb collisions with the ATLAS detector ATLAS collaboration (2925 authors) Phys.Lett. B789 (2019) 444-471 10.1016/j.physletb.2018.11.065
  46. Measurements of gluon-gluon fusion and vector-boson fusion Higgs boson production cross-sections in the $H o WW^{ast} o e umu u$ decay channel in $pp$ collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2935 authors) Phys.Lett. B789 (2019) 508-529 10.1016/j.physletb.2018.11.064
  47. Measurement of photon–jet transverse momentum correlations in 5.02 TeV Pb + Pb and $pp$ collisions with ATLAS ATLAS collaboration (2924 authors) Phys.Lett. B789 (2019) 167-190 10.1016/j.physletb.2018.12.023
  48. Search for dark matter particles produced in association with a top quark pair at $sqrt{s} =$ 13 TeV CMS collaboration (2304 authors) Phys.Rev.Lett. 122 (2019) 011803 10.1103/PhysRevLett.122.011803
  49. Search for light resonances decaying to boosted quark pairs and produced in association with a photon or a jet in proton-proton collisions at $sqrt{s}=13$ TeV with the ATLAS detector ATLAS collaboration (2885 authors) Phys.Lett. B788 (2019) 316-335 10.1016/j.physletb.2018.09.062
  50. Seleção de Atributos de Dados Inconsistentes em ambiente HDF5+Python na cloud INCD; João Apolónia, Luís Cavique, Universidade Aberta, DCeT https://repositorioaberto.uab.pt/bitstream/10400.2/8912/1/184-Texto%20Artigo-680-1-10-20191206.pdf
  51. Search for Higgs boson pair production in the $gammagammamathrm{boverline{b}}$ final state in pp collisions at $sqrt{s}=$ 13 TeV CMS collaboration (2285 authors) Phys.Lett. B788 (2019) 7-36 10.1016/j.physletb.2018.10.056
  52. Measurement of differential cross sections for inclusive isolated-photon and photon+jets production in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2299 authors) Eur.Phys.J. C79 (2019) 20 10.1140/epjc/s10052-018-6482-9
  53. Search for heavy charged long-lived particles in proton-proton collisions at $sqrt{s} = 13$ TeV using an ionisation measurement with the mbox{ATLAS} detector ATLAS collaboration (2933 authors) Phys.Lett. B788 (2019) 96-116 10.1016/j.physletb.2018.10.055
  54. Search for low-mass resonances decaying into bottom quark-antiquark pairs in proton-proton collisions at $sqrt{s} =$ 13 TeV CMS collaboration (2292 authors) Phys.Rev. D99 (2019) 012005 10.1103/PhysRevD.99.012005
  55. Search for pair production of Higgs bosons in the $bar{b}bar{b}$ final state using proton-proton collisions at $sqrt{s} = 13$ TeV with the ATLAS detector ATLAS collaboration (2901 authors) JHEP 1901 (2019) 030 10.1007/JHEP01(2019)030
  56. Electroluminescence TPCs at the Thermal Diffusion Limit NEXT collaboration (81 authors) JHEP 1901 (2019) 027 10.1007/JHEP01(2019)027
  57. Search for long-lived particles in final states with displaced dimuon vertices in $pp$ collisions at $sqrt{s}=$ 13 TeV with the ATLAS detector ATLAS collaboration (2920 authors) Phys.Rev. D99 (2019) 012001 10.1103/PhysRevD.99.012001
  58. Search for heavy Majorana or Dirac neutrinos and right-handed $W$ gauge bosons in final states with two charged leptons and two jets at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration (2924 authors) JHEP 1901 (2019) 016 10.1007/JHEP01(2019)016
  59. Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement, Rodrigues, S, Sinval, J, Queirós, C, Marôco, J, Kaiseler, M., Int J Select Assess. 2019; 27: 152– 168. https://doi.org/10.1111/ijsa.12238

Thesis / Dissertation

PhD Thesis

Master Thesis

  1. Scintillation detectores for dosimetric monitoring in interventional cardiology
  2. New observables and techniques for the study of jets in hadron collisions
  3. Study of the exclusive production of the top quark in the CMS experiment
  4. Searching for jet quenching in small systems
  5. Topic modelling for jets
  6. Thermal Study of a Module for SWGO (Southern Hemisphere Wide field-of-view Gamma-ray Observatory)
  7. Conception of a Tissue Equivalent Plastic Dosimeter Using Scintillating Fibres for Hadronic Therapy and Space Radiation Effects Studies
  8. Probing the quark gluon plasma medium through B meson production measurements in PbPb collisions at the LHC
  9. The impact of electric field distortion on CP violation studies: study of space charge effects on protoDUNE
  10. Machine Learning in Analytical Chemistry: Applying Innovative Data Analysis Methods Using Chromatographic Techniques
  11. Estudo da resposta dosimétrica de cintiladores plásticos em feixes de protões
  12. Analysis of in-flight data on the AlphaSat radiation Environment Effects Facility
  13. PlaCor: Plataforma para a Computação Orientada ao Recurso
  14. Treino de redes neuronais profundas de forma distribuída
  15. Bento, Andre. Observing and controlling performance in microservices. Diss. Universidade de Coimbra, 2019.
  16. Marta Afonso Morgadinho Martins "Atributos genómicos e fenotípicos que influenciam a ocorrência de Saccharomyces cerevisiae como microorganismo patogénico oportunista. Dissertação Mestrado em Microbiologia Médica" 2019.
  17. Santos, C. 2019. Estado atual das populações de berbigão (Cerastoderma spp) no estuário do Sado. Mestrado em Ecologia e Gestão Ambiental, Universidade de Lisboa, Faculdade de Ciências. 64 pp.
  18. Ferreira, M. 2019. Movement patterns of the Wels catfish (Silurus glanis) in River Tagus: implications for the management of aquatic systems. Mestrado em Biologia da Conservação, Universidade de Lisboa, Faculdade de Ciências. 45 pp.

Conference Paper

Conference Poster

2018

Journal Paper with direct contribution

  1. Llarena, Anna;Katrin, et al. "INNUENDO: a cross sectoral platform for the integration of genomics in the surveillance of food borne pathogens." EFSA Supporting Publications 15.11 (2018): 1498E. https://efsa.onlinelibrary.wiley.com/doi/abs/10.2903/sp.efsa.2018.EN-1498
  2. Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November. Nonintrusive Monitoring of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
  3. Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. Response Time Characterization of Microservice-Based Systems. In 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
  4. F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores”, 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
  5. F.J.A.L. Cruz and J.P.B. Mota, “Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores”, 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
  6. F.J.A.L. Cruz and J.P.B. Mota, “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes”, XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
  7. Rodrigues, S., Sinval, J., Queirós, C., Marôco, J., & Kaiseler, M. (2019). Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment, 27(2), 152–168. https://doi.org/10.1111/ijsa.12238
  8. Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019). Quality of Work Life Scale: Validity evidence from Brazil, and Portugal. Applied Research in Quality of Life. https://doi.org/10.1007/s11482-019-09730-3
  9. haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, ... BioRxiv, 441774
  10. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
  11. Observation of Fine Time Structures in the Cosmic Proton and Helium Fluxes with the Alpha Magnetic Spectrometer on the International Space Station AMS Collaboration Phys. Rev. Lett. 121, 051101
  12. Testing Diffusion of Cosmic Rays in the Heliosphere with Proton and Helium Data from AMS N. Tomassetti, F. Barão, B. Bertucci, E. Fiandrini, J. L. Figueiredo, J. B. Lousada, and M. Orcinha Phys. Rev. Lett. 121, 251104
  13. Search for the standard model Higgs boson produced in association with top quarks and decaying into a b(b)overbar pair in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration Phys. Rev. D 97 (2018) 072016
  14. Search for flavour-changing neutral current top-quark decays t -> qZ in proton-proton collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 7 (2018) 176
  15. The High Voltage distribution system of the ATLAS Tile Calorimeter and its performance during data taking D. Calvet, S. Calvet, R. Chadelas, D. Cinca, Ph. Grenier, P. Gris, P. Lafarguette, D. Lambert, M. Marjanovi, L. F. Oleiro Seabra, F. M. Pedro Martins, J. B. Pena Madeira Gouveia De Campos, S. M. Romano Saez, P. Rosnet, C. Santoni, L. Valéry, F. Vazeille JINST 13 (2018) P08006
  16. Search for pair production of heavy vector-like quarks decaying into high-(PT) W bosons and top quarks in the lepton-plus-jets final state in pp collisions at root s=13 TeV with the ATLAS detector ATLAS Collaboration J. High Energy Phys. 8 (2018) 048
  17. CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
  18. Observation of Higgs boson production in association with a top quark pair at the LHC with the ATLAS detector ATLAS Collaboration Phys. Lett. B 784 (2018) 173, arXiv:1806.00425 [hep-ex]
  19. Observation of H -> b(b)over-bar decays and V H production with the ATLAS detector ATLAS Collaboration Phys. Lett. B 786 (2018) 59-86
  20. Search for charged Higgs bosons decaying into top and bottom quarks at $sqrt{s}$ = 13 TeV with the ATLAS detector ATLAS collaboration JHEP 1811 (2018) 085
  21. Combination of the Searches for Pair-Produced Vectorlike Partners of the Third-Generation Quarks at root s=13 TeV with the ATLAS Detector ATLAS Collaboration Phys. Rev. Lett. 121 (2018) 211801
  22. Operation and performance of the ATLAS Tile Calorimeter in Run 1 ATLAS collaboration Eur.Phys.J. C78 (2018) 987
  23. Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
  24. Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
  25. MARTA: A high-energy cosmic-ray detector concept with high-accuracy muon measurement P. Abreu, S. Andringa, P. Assis, A. Blanco, V. Barbosa Martins, P. Brogueira, N. Carolino, L. Cazon, M. Cerda, G. Cernicchiaro, R. Colalillo, R. Conceição, O. Cunha, R. M. de Almeida, V. de Souza, F. Diogo, C. Dobrigkeit, J. Espadanal, C. Espirito-Santo, M. Ferreira, P. Ferreira, P. Fonte, U. Giaccari, P. Gonçalves, F. Guarino, O. C. Lippmann, L. Lopes, R. Luz, D. Maurizio, F. Marujo, P. Mazur, L. Mendes, A. Pereira, M. Pimenta, R. R. Prado, J. Rídký, R. Sarmento, C. Scarso, R. Shellard, J. Souza, B. Tomé, Eur. Phys. J. C (2018) 78: 333
  26. The MARTA (Muon Array with RPCs for Tagging Air showers) Front-End acquisition system P. Assis, A. Blanco, P. Brogueira, M. Ferreira and R. Luz IEEE Transactions on Nuclear Science ( Volume: 65 , Issue: 12 , Dec. 2018 )2920 - 2928
  27. Towards a Next Generation of CORSIKA: A Framework for the Simulation of Particle Cascades in Astroparticle Physics Ralph Engel, Dieter Heck, Tim Huege, Tanguy Pierog, Maximilian Reininghaus, Felix Riehn, Ralf Ulrich, Michael Unger, Darko Veberič Comput Softw Big Sci (2019) 3: 2
  28. Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
  29. From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
  30. Observation of proton-tagged, central (semi)exclusive production of high-mass lepton pairs in pp collisions at 13 TeV with the CMS-TOTEM precision proton spectrometer CMS and TOTEM Collaborations J. High Energy Phys. 7 (2018) 153
  31. Charged particle timing at sub-25 picosecond precision: the PICOSEC detection concept M. Gallinaro et al. arXiv:1806.04395
  32. Search for top squarks decaying via four-body or chargino-mediated modes in single-lepton final states in proton-proton collisions at $sqrt{s}$=13~TeV P. Bargassa, C. Beirao et al J. High Energy Phys. 9 (2018) 065
  33. PICOSEC: Charged particle timing at sub-25 picosecond precision with a Micromegas based detector M. Gallinaro et al. Nucl. Instrum. Meth. A 903, 317 (2018)
  34. Deep Diffused APDs for Charged Particle Timing Applications: Performance after Neutron Irradiation M. Gallinaro et al. arXiv:1812.08433
  35. Transverse-momentum-dependent multiplicities of charged hadrons in muon-deuteron deep inelastic scattering COMPASS Collaboration Phys. Rev. D 97, 032006 (2018)
  36. New analysis of eta-pi tensor resonances measured at the COMPASS experiment JPAC and COMPASS Collaborations Physics Letters B 779 (2018) 464–472
  37. Longitudinal double-spin asymmetry A1p and spin dependent structure function g1p of the proton at small values of x and Q2 M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 781 (2018) 464-472
  38. Search for muoproduction of X(3872) at COMPASS and indication of a new state X^~(3872) M. Aghasyan et al. (COMPASS Collab.) Physics Letters B 783 (2018) 334–340
  39. K− over K+ multiplicity ratio for kaons produced in DIS with a large fraction of the virtual-photon energy R. Akhunzyanov et al. (COMPASS Coll.) Physics Letters B 786 (2018) 390–398
  40. Light isovector resonances in π−p → π−π−π+p at 190 GeV/c M. Aghasyan et al. (COMPASS Collab.) Phys. Rev. D 98, 092003 (2018)
  41. Azimuthal asymmetries of charged hadrons produced in high-energy muon scattering off longitudinally polarised deuterons C. Adolph et al (COMPASS Coll.) Eur. Phys. J. C (2018) 78:952
  42. Measurement of PT-weighted Sivers asymmetries in leptoproduction of hadrons M.G. Alexeev et al (COMPASS Coll.) Nucl. Phys. B 940 (2019) 34–53
  43. Design and expected performance of a novel hybrid detector for very-high-energy gamma astrophysics P. Assis, U. Barres de Almeida, A. Blanco, R. Conceição, B. D'Ettore Piazzoli, A. De Angelis, M. Doro, P. Fonte, L. Lopes, G. Matthiae, M. Pimenta, R. Shellard, B. Tomé Astropart.Phys. 101 (2018) 36-36
  44. Structure of Be-13 studied in proton knockout from B-14 G. Ribeiro, E. Nacher, O. Tengblad, et al. Phys. Rev. C 98, 024603 (2018)
  45. Global constraints on top quark anomalous couplings Frederic Deliot, Ricardo Faria, Miguel C. N. Fiolhais, Pedro Lagarelhos, Antonio Onofre, Christopher M. Pease, Ana Vasconcelos Phys. Rev. D 97 (2018) 013007
  46. Universal kinematic scaling as a probe of factorized long-distance effects in high-energy quarkonium production Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas Eur. Phys. J. C 78 (2018) 118
  47. Probing the energy spectrum of hadrons in proton air interactions at ultrahigh energies through the fluctuations of the muon content of extensive air showers. Lorenzo Cazon, Ruben Conceição, Felix Riehn Phys.Lett. B784 (2018) 68-76
  48. From identical S- and P-wave p(T) spectra to maximally distinct polarizations: probing NRQCD with chi states Pietro Faccioli, Carlos Lourenco, Mariana Araujo, Joao Seixas, Ilse Kraetschmer, Valentin Knunz Eur. Phys. J. C 78 (2018) 268
  49. Sensitivity of jet substructure to jet-induced medium response José Guilherme Milhano, Urs Achim Wiedemann, Korinna Christine Zapp Phys.Lett. B779 (2018) 409-413
  50. Probing the time structure of the quark-gluon plasma with top quarks Liliana Apolinário, José Guilherme Milhano, Gavin P. Salam, Carlos A. Salgado Phys.Rev.Lett. 120 (2018) no.23, 232301
  51. Novel subjet observables for jet quenching in heavy-ion collisions Liliana Apolinário, José Guilherme Milhano, Mateusz Ploskon, Xiaoming Zhang Eur.Phys.J. C78 (2018) no.6, 529
  52. CP tests of Higgs couplings in tth semileptonic events at the LHC D. Azevedo, A. Onofre, F. Filthaut, and R. Gonçalo Phys.Rev. D98 (2018) 033004
  53. The fate of quarkonia in heavy-ion collisions at LHC energies: a unified description of the sequential suppression patterns Pietro Faccioli, Carlos Lourenço Eur.Phys.J. C78 (2018) 731
  54. CP in the dark Duarte Azevedo, Pedro M. Ferreira, M. Margarete Muhlleitner, Shruti Patel, Rui Santos, Jonas Wittbrodt J. High Energy Phys. 11 (2018) 091
  55. Search for pair and single production of vectorlike quarks in final states with at least one Z boson decaying into a pair of electrons or muons in pp collision data collected with the ATLAS detector at root s=13 TeV ATLAS Collaboration Phys. Rev. D 98 (2018) 112010
  56. “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 41st Iberian Adsorption Meeting, Gijón, Spain, September 2018.
  57. “Thermodynamics and Kinetics of DNA in Hydrophilic Nanopores” F.J.A.L. Cruz and J.P.B. Mota 11th International conference on Advanced Nanomaterials, Aveiro, Portugal, July 2018.
  58. “Equilibrium and Transport Distributions of DNA in Hydrophilic Nanotubes” F.J.A.L. Cruz and J.P.B. Mota XIII Physical-Chemistry National Meeting, Faro, Portugal, June 2018.
  59. Transitioning from recruit to officer: An investigation of how stress appraisal and coping influence work engagement. International Journal of Selection and Assessment Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) International Journal of Selection and Assessment, 27(2), 152–168.
  60. Quality of Work Life Scale: Validity evidence from Brazil, and Portugal Sinval, J., Sirgy, M. J., Lee, D.-J., & Marôco, J. (2019) Applied Research in Quality of Life
  61. A haplotype-resolved draft genome of the European sardine (Sardina pilchardus) B Louro, G De Moro, CM Garcia, C Cox, A Veríssimo, SJ Sabatino, .. BioRxiv, 441774
  62. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.) F de Sousa, PG Foster, PCJ Donoghue, H Schneider, CJ Cox New Phytologist 222 (1), 565-575
  63. Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins Physical Chemistry Chemical Physics, 2019, DOI: 10.1039/C9CP01701A
  64. Nonintrusive Monitoring of Microservice-Based Systems Pina, F., Correia, J., Filipe, R., Araujo, F. and Cardroom, J., 2018, November 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) (pp. 1-8). IEEE.
  65. Response Time Characterization of Microservice-Based Systems Correia J, Ribeiro F, Filipe R, Arauio F, Cardoso J. 2018 IEEE 17th International Symposium on Network Computing and Applications (NCA) 2018 Nov 1 (pp. 1-5). IEEE.
  66. Near-future changes in storm surges along the Atlantic Iberian coast, Natural Hazards, Fortunato, A.B., Meredith, E.P., Rodrigues, M., Freire, P., Feldmann, H. 2018. https://doi.org/10.1007/s11069-018-3375-z
  67. umd-verification: Automation of Software Validation for the EGI federated e-Infrastructure, Pablo Orviz, Joao Pina, Álvaro López, Isabel Campos, Jorge Gomes, Mario David, J Grid Computing (2018) 16: 683. https://doi.org/10.1007/s10723-018-9454-2
  68. INDIGO-DataCloud: a platform to facilitate seamless access to e-infrastructures, D. Salomoni , I. Campos, L. Gaido, J. Marco de Lucas, P. Solagna, J. Gomes, et al, J Grid Computing (2018) 16: 381. https://doi.org/10.1007/s10723-018-9453-3
  69. Enabling rootless Linux Containers in multi-user environments: the udocker tool, Jorge Gomes, Isabel Campos, Emanuele Bagnaschi, Mario David, Luis Alves, Joao Martins, Joao Pina, Alvaro Lopez-Garcia, Pablo Orviz, Computer Physics Communications, Volume 232, 2018, Pages 84-97, ISSN 0010-4655, DOI: 10.1016/j.cpc.2018.05.021
  70. Running high resolution coastal models in forecast systems: moving from workstations and HPC cluster to cloud resources, João Rogeiro, Marta Rodrigues, Alberto Azevedo, Anabela Oliveira, João Paulo Martins, Mário David, João Pina, Nuno Dias, Jorge Gomes, Advances in Engineering Software, Volume 117, 2018, Pages 70-79, ISSN 0965-9978, DOI: 10.1016/j.advengsoft.2017.04.002
  71. Electrons in GEO measured with the ESA Multi-Functional Spectrometer during the January 2014 SEP, L. Arruda, P. Goncalves, A. Marques, J. Costa-Pinto, A. Aguilar, P. Marinho, T. Sousa, H. Evans, P. Nieminen, IEEE TNS Vol65, Issue 8 pp 1540 - 1545 August 18, DOI: 10.1109/TNS.2018.2854161
  72. Assessment of radiation exposure in manned missions to Mars for three mission profiles, A. L. Casimiro, J. M. Sampaio, P. Gonçalves, M. Pinto, Radiation and Applications Journal (RAD Journal), Volume 3, Issue 1, pp. 27-33, March 2018, DOI: 10.21175/RadJ.2018.01.006
  73. Optimization of the signal-to-background ratio in prompt gamma imaging using energy- and shifting time-of-flight discrimination: experiments with a scanning parallel-slit collimator, P. Cambraia Lopes, P. Crespo, J. Huizenga, D.R. Schaart, IEEE Trans. Radiat. Plasma Med. Sci., vol. 2, pp. 510-9, DOI: 10.1109/TRPMS.2018.2846612
  74. Fast phylogenetic inference from typing data, by J. A. Carriço, M. Crochemore, A. P. Francisco, S. P. Pissis, B. Ribeiro‑Gonçalves and C. Vaz. Algorithms for Molecular Biology, 13:4, 2018, DOI: 10.1186/s13015-017-0119-7
  75. Dynamic phylogenetic inference for sequence-based typing data, by A. P. Francisco, M. Nascimento and C. Vaz. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 604-604, 2017, DOI: 10.1145/3107411.3108214
  76. An approach to evolve and exploit repertoires of general robot behaviours, Jorge Gomes, Sancho Moura Oliveira, Anders Lyhne Christensen, Swarm and Evolutionary Computation, Volume 43, 2018, Pages 265-283, ISSN 2210-6502, https://doi.org/10.1016/j.swevo.2018.06.009.
  77. A biobjective feature selection algorithm for large omics datasets, Cavique, L, Mendes, AB, Martiniano, HFMC, Correia, L., Expert Systems. 2018; 35:e12301. https://doi.org/10.1111/exsy.12301

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Thesis / Dissertation

PhD Thesis

Master Thesis

Conference Paper

Conference Poster

2017

Journal Paper with direct contribution

Journal Paper with indirect contribution (*)

(*) includes articles of internacional collaboration that used INCD infrastruture without direct contribution from Portuguese researchers.

Thesis / Dissertation (*)

Phd Thesis

(*) Ended in 2017

Master Thesis

Conference Paper

Conference Poster